David Fenyo (David Fenyö)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 41

Top Venues

bioRxiv : the preprint server for biology

eLife

Journal of proteome research

Nature structural & molecular biology

New York University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

New York University Sep 01 2015

United States

Professor :: Biochemistry and Molecular Pharmacology

NYU School of Medicine Oct 01 2010

United States

Associate Professor of Biochemistry and Molecular Pharmacology (Academic) :: Biochemistry and Molecular Pharmacology

New York University Oct 01 2010 - Aug 31 2015

United States

Associate Professor :: Biochemistry and Molecular Pharmacology

Publications

Letícia Szadai, Aron Bartha, Indira Pla Parada, Alexandra Lakatos, Dorottya Pál, Anna Sára Lengyel, Natália Pinto de Almeida, Ágnes Judit Jánosi, Fábio Nogueira, Beata Szeitz, Viktória Doma, Nicole Woldmar, Jéssica Guedes, Zsuzsanna Ujfaludi, Zoltán Gábor Pahi, Tibor Pankotai, Yonghyo Kim, Balázs Győrffy, Bo Baldetorp, Charlotte Welinder, A Marcell Szasz, Lazaro Betancourt, Jeovanis Gil, Roger Appelqvist, Ho-Jeong Kwon, Sarolta Kárpáti, Magdalena Kuras, Jimmy Rodriguez Murillo, István Balázs Németh, Johan Malm, David Fenyo, Krzysztof Pawłowski, Peter Horvatovich, Elisabet Wieslander, Lajos Vince Kemény, Gilberto Domont, György MarkoVarga, Aniel Sanchez
Predicting immune checkpoint therapy response in three independent metastatic melanoma cohorts. bioRxiv : the preprint server for biology (2024)
Jimin Tan, Hortense Le, Jiehui Deng, Yingzhuo Liu, Yuan Hao, Michelle Hollenberg, Wenke Liu, Joshua M Wang, Bo Xia, Sitharam Ramaswami, Valeria Mezzano, Cynthia Loomis, Nina Murrell, Andre L Moreira, Kyunghyun Cho, Harvey Pass, Kwok-Kin Wong, Yi Ban, Benjamin G Neel, Aristotelis Tsirigos, David Fenyo
Characterization of tumor heterogeneity through segmentation-free representation learning. bioRxiv : the preprint server for biology (2024)
Letícia Szadai, Aron Bartha, Indira Pla Parada, Alexandra Lakatos, Dorottya Pál, Anna Sára Lengyel, Natália Pinto de Almeida, Ágnes Judit Jánosi, Fábio Nogueira, Beata Szeitz, Viktória Doma, Nicole Woldmar, Jéssica Guedes, Zsuzsanna Ujfaludi, Zoltán Gábor Pahi, Tibor Pankotai, Yonghyo Kim, Balázs Győrffy, Bo Baldetorp, Charlotte Welinder, A Marcell Szasz, Lazaro Betancourt, Jeovanis Gil, Roger Appelqvist, Ho-Jeong Kwon, Sarolta Kárpáti, Magdalena Kuras, Jimmy Rodriguez Murillo, István Balázs Németh, Johan Malm, David Fenyo, Krzysztof Pawłowski, Peter Horvatovich, Elisabet Wieslander, Lajos Vince Kemény, Gilberto Domont, György MarkoVarga, Aniel Sanchez
Predicting immune checkpoint therapy response in three independent metastatic melanoma cohorts. bioRxiv : the preprint server for biology (2024)
Jiehui Deng, David H Peng, David Fenyo, Hao Yuan, Alfonso Lopez, Daniel S Levin, Mary Meynardie, Mari Quinteros, Michela Ranieri, Soumyadip Sahu, Sally C M Lau, Elaine Shum, Vamsidhar Velcheti, Salman R Punekar, Natasha Rekhtman, Catríona M Dowling, Vajira K Weerasekara, Yun Xue, Hongbin Ji, Yik Siu, Drew Jones, Aaron N Hata, Takeshi Shimamura, John T Poirier, Charles M Rudin, Takamitsu Hattori, Shohei Koide, Thales Papagiannakopoulos, Benjamin G Neel, Nabeel Bardeesy, Kwok-Kin Wong
In vivo metabolomics identifies CD38 as an emergent vulnerability in LKB1 -mutant lung cancer. bioRxiv : the preprint server for biology (2023)
Wilson McKerrow, Larisa Kagermazova, Nicole Doudican, Nicholas Frazzette, Efiyenia Ismini Kaparos, Shane A Evans, Azucena Rocha, John M Sedivy, Nicola Neretti, John Carucci, Jef D Boeke, David Fenyo
LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5' single-cell RNA-Seq. Nucleic acids research 51 (5) (2023)
Kritika Srinivasan Rajsri, Michael P McRae, Nicolaos J Christodoulides, Isaac P Dapkins, Glennon W Simmons, Hanover Matz, Helen Dooley, David Fenyo, John T McDevitt
Simultaneous Quantitative SARS-CoV-2 Antigen and Host Antibody Detection and Pre-Screening Strategy at the Point of Care. Bioengineering (Basel, Switzerland) 10 (6) (2023)
Wilson McKerrow, Larisa Kagermazova, Nicole Doudican, Nicholas Frazzette, Efiyenia Ismini Kaparos, Shane A Evans, Azucena Rocha, John M Sedivy, Nicola Neretti, John Carucci, Jef D Boeke, David Fenyo
LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5' single-cell RNA-Seq. Nucleic acids research (2023)
Wilson McKerrow, Larisa Kagermazova, Nicole Doudican, Nicholas Frazzette, Efiyenia Ismini Kaparos, Shane A Evans, Azucena Rocha, John M Sedivy, Nicola Neretti, John Carucci, Jef D Boeke, David Fenyo
LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5' single-cell RNA-Seq. Nucleic acids research 51 (5) (2023)
Kritika Srinivasan Rajsri, Michael P McRae, Nicolaos J Christodoulides, Isaac P Dapkins, Glennon W Simmons, Hanover Matz, Helen Dooley, David Fenyo, John T McDevitt
Simultaneous Quantitative SARS-CoV-2 Antigen and Host Antibody Detection and Pre-Screening Strategy at the Point of Care. Bioengineering (Basel, Switzerland) 10 (6) (2023)
Ying Wang, David Fenyo
Proteogenomics Reveal the Overexpression of HLA-I in Cancer. Journal of proteome research (2023)
Jiehui Deng, David H Peng, David Fenyo, Hao Yuan, Alfonso Lopez, Daniel S Levin, Mary Meynardie, Mari Quinteros, Michela Ranieri, Soumyadip Sahu, Sally C M Lau, Elaine Shum, Vamsidhar Velcheti, Salman R Punekar, Natasha Rekhtman, Catríona M Dowling, Vajira K Weerasekara, Yun Xue, Hongbin Ji, Yik Siu, Drew Jones, Aaron N Hata, Takeshi Shimamura, John T Poirier, Charles M Rudin, Takamitsu Hattori, Shohei Koide, Thales Papagiannakopoulos, Benjamin G Neel, Nabeel Bardeesy, Kwok-Kin Wong
In vivo metabolomics identifies CD38 as an emergent vulnerability in LKB1 -mutant lung cancer. bioRxiv : the preprint server for biology (2023)
Kate E Coleman, Yandong Yin, Sarah Kit Leng Lui, Sarah Keegan, David Fenyo, Duncan J Smith, Eli Rothenberg, Tony T Huang
USP1-trapping lesions as a source of DNA replication stress and genomic instability. Nature communications 13 (1) (2022)
Pan Cheng, Xin Zhao, Lizabeth Katsnelson, Elaine M Camacho-Hernandez, Angela Mermerian, Joseph C Mays, Scott M Lippman, Reyna Edith Rosales-Alvarez, Raquel Moya, Jasmine Shwetar, Dominic Grun, David Fenyo, Teresa Davoli
Proteogenomic analysis of cancer aneuploidy and normal tissues reveals divergent modes of gene regulation across cellular pathways. eLife 11 (2022)
Jill M Westcott, Francine Hughes, Wenke Liu, Mark Grivainis, Iffath Hoskins, David Fenyo
Prediction of Maternal Hemorrhage Using Machine Learning: Retrospective Cohort Study. Journal of medical Internet research 24 (7) (2022)
Erin E Zwack, Ze Chen, Joseph C Devlin, Zhi Li, Xuhui Zheng, Ada Weinstock, Keenan A Lacey, Edward A Fisher, David Fenyo, Kelly V Ruggles, P'ng Loke, Victor J Torres
Staphylococcus aureus induces a muted host response in human blood that blunts the recruitment of neutrophils. Proceedings of the National Academy of Sciences of the United States of America 119 (31) (2022)
Paul Johannet, Wenke Liu, David Fenyo, Megan Wind-Rotolo, Michelle Krogsgaard, Janice M Mehnert, Jeffrey S Weber, Judy Zhong, Iman Osman
Baseline Serum Autoantibody Signatures Predict Recurrence and Toxicity in Melanoma Patients Receiving Adjuvant Immune Checkpoint Blockade. Clinical cancer research : an official journal of the American Association for Cancer Research 28 (18) (2022)
Fred D Mast, Peter C Fridy, Natalia E Ketaren, Junjie Wang, Erica Y Jacobs, Jean Paul Olivier, Tanmoy Sanyal, Kelly R Molloy, Fabian Schmidt, Magda Rutkowska, Yiska Weisblum, Lucille M Rich, Elizabeth R Vanderwall, Nicolas Dambrauskas, Vladimir Vigdorovich, Sarah Keegan, Jacob B Jiler, Milana E Stein, Paul Dominic B Olinares, Theodora Hatziioannou, D Noah Sather, Jason S Debley, David Fenyo, Andrej Sali, Paul D Bieniasz, John D Aitchison, Brian T Chait, Michael P Rout
Nanobody Repertoires for Exposing Vulnerabilities of SARS-CoV-2. bioRxiv : the preprint server for biology (2021)
Joshua M Wang, Wenke Liu, Xiaoshan Chen, Michael P McRae, John T McDevitt, David Fenyo
Predictive Modeling of Morbidity and Mortality in Patients Hospitalized With COVID-19 and its Clinical Implications: Algorithm Development and Interpretation. Journal of medical Internet research 23 (7) (2021)
Lili Blumenberg, Emily A Kawaler, MacIntosh Cornwell, Shaleigh Smith, Kelly V Ruggles, David Fenyo
BlackSheep: A Bioconductor and Bioconda Package for Differential Extreme Value Analysis. Journal of proteome research 20 (7) (2021)
Kuan-Lin Huang, Adam D Scott, Daniel Cui Zhou, Liang-Bo Wang, Amila Weerasinghe, Abdulkadir Elmas, Ruiyang Liu, Yige Wu, Michael C Wendl, Matthew A Wyczalkowski, Jessika Baral, Sohini Sengupta, Chin-Wen Lai, Kelly Ruggles, Samuel H Payne, Benjamin Raphael, David Fenyo, Ken Chen, Gordon B Mills, Li Ding
Spatially interacting phosphorylation sites and mutations in cancer. Nature communications 12 (1) (2021)
Fred D Mast, Peter C Fridy, Natalia E Ketaren, Junjie Wang, Erica Y Jacobs, Jean Paul Olivier, Tanmoy Sanyal, Kelly R Molloy, Fabian Schmidt, Magdalena Rutkowska, Yiska Weisblum, Lucille M Rich, Elizabeth R Vanderwall, Nicholas Dambrauskas, Vladimir Vigdorovich, Sarah Keegan, Jacob B Jiler, Milana E Stein, Paul Dominic B Olinares, Louis Herlands, Theodora Hatziioannou, D Noah Sather, Jason S Debley, David Fenyo, Andrej Sali, Paul D Bieniasz, John D Aitchison, Brian T Chait, Michael P Rout
Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape. eLife 10 (2021)
Paolo Cifani, Zhi Li, Danmeng Luo, Mark Grivainis, Andrew M Intlekofer, David Fenyo, Alex Kentsis
Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics. Journal of proteome research 20 (4) (2021)
Heyi Yang, Erin R Butler, Samantha A Monier, Jennifer Teubl, David Fenyo, Beatrix Ueberheide, Donald Siegel
A predictive model for vertebrate bone identification from collagen using proteomic mass spectrometry. Scientific reports 11 (1) (2021)
Cristina M Castro, Carmen Corciulo, Benjamin Friedman, Zhi Li, Samson Jacob, David Fenyo, Bruce N Cronstein
Adenosine A2A receptor null chondrocyte transcriptome resembles that of human osteoarthritic chondrocytes. Purinergic signalling 17 (3) (2021)
Erica M Briggs, Wilson McKerrow, Paolo Mita, Jef D Boeke, Susan K Logan, David Fenyo
RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs. Mobile DNA 12 (1) (2021)
Vera Gorbunova, Andrei Seluanov, Paolo Mita, Wilson McKerrow, David Fenyo, Jef D Boeke, Sara B Linker, Fred H Gage, Jill A Kreiling, Anna P Petrashen, Trenton A Woodham, Jackson R Taylor, Stephen L Helfand, John M Sedivy
The role of retrotransposable elements in ageing and age-associated diseases. Nature 596 (7870) (2021)
Sarah Kit Leng Lui, Sarah Keegan, Peter Tonzi, Malik Kahli, Yu-Hung Chen, Noor Chalhoub, Kate E Coleman, David Fenyo, Duncan J Smith, Tony T Huang
Monitoring genome-wide replication fork directionality by Okazaki fragment sequencing in mammalian cells. Nature protocols 16 (2) (2021)
Daniel Ardeljan, Jared P Steranka, Chunhong Liu, Zhi Li, Martin S Taylor, Lindsay M Payer, Mikhail Gorbounov, Jacob S Sarnecki, Vikram Deshpande, Ralph H Hruban, Jef D Boeke, David Fenyo, Pei Hsun Wu, Agata Smogorzewska, Andrew Jon Holland, Kathleen H Burns
Cell fitness screens reveal a conflict between LINE-1 retrotransposition and DNA replication. Nature structural & molecular biology 27 (2) (2020)
Michael P McRae, Glennon W Simmons, Nicolaos J Christodoulides, Zhibing Lu, Stella K Kang, David Fenyo, Timothy Alcorn, Isaac P Dapkins, Iman Sharif, Deniz Vurmaz, Sayli S Modak, Kritika Srinivasan Rajsri, Shruti Warhadpande, Ravi Shrivastav, John T McDevitt
Clinical Decision Support Tool and Rapid Point-of-Care Platform for Determining Disease Severity in Patients with COVID-19. medRxiv : the preprint server for health sciences (2020)
Michael P McRae, Isaac P Dapkins, Iman Sharif, Judd Anderman, David Fenyo, Odai Sinokrot, Stella K Kang, Nicolaos J Christodoulides, Deniz Vurmaz, Glennon W Simmons, Timothy M Alcorn, Marco J Daoura, Stu Gisburne, David Zar, John T McDevitt
Managing COVID-19 With a Clinical Decision Support Tool in a Community Health Network: Algorithm Development and Validation. Journal of medical Internet research 22 (8) (2020)
Joseph C Devlin, Erin E Zwack, Mei San Tang, Zhi Li, David Fenyo, Victor J Torres, Kelly V Ruggles, P'ng Loke
Distinct Features of Human Myeloid Cell Cytokine Response Profiles Identify Neutrophil Activation by Cytokines as a Prognostic Feature during Tuberculosis and Cancer. Journal of immunology (Baltimore, Md. : 1950) 204 (12) (2020)
Paolo Mita, Xiaoji Sun, David Fenyo, David J Kahler, Donghui Li, Neta Agmon, Aleksandra Wudzinska, Sarah Keegan, Joel S Bader, Chi Yun, Jef D Boeke
BRCA1 and S phase DNA repair pathways restrict LINE-1 retrotransposition in human cells. Nature structural & molecular biology 27 (2) (2020)
Emily M Adney, Matthias T Ochmann, Srinjoy Sil, David M Truong, Paolo Mita, Xuya Wang, David J Kahler, David Fenyo, Liam J Holt, Jef D Boeke
Comprehensive Scanning Mutagenesis of Human Retrotransposon LINE-1 Identifies Motifs Essential for Function. Genetics 213 (4) (2019)
Lazaro Hiram Betancourt, Attila Marcell Szasz, Magdalena Kuras, Jimmy Rodriguez Murillo, Yutaka Sugihara, Indira Pla Parada, Zsolt Horvath, Krzysztof Pawlowski, Melinda Rezeli, Kenichi Miharada, Jeovanis Gil, Jonatan Eriksson, Roger Appelqvist, Tasso Miliotis, Bo Baldetorp, Christian Ingvar, Håkan Olsson, Lotta Lundgren, Peter L Horvatovich, Charlotte Welinder, Elisabet Wieslander, Ho Jeong Kwon, Johan Malm, Istvan Balazs Nemeth, Göran Jönsson, David Fenyo, Aniel Sanchez, György Marko-Varga
The Hidden Story of Heterogeneous B-raf V600E Mutation Quantitative Protein Expression in Metastatic Melanoma-Association with Clinical Outcome and Tumor Phenotypes. Cancers 11 (12) (2019)
Paolo Mita, Aleksandra Wudzinska, Xiaoji Sun, Joshua Andrade, Shruti Nayak, David J Kahler, Sana Badri, John LaCava, Beatrix Ueberheide, Chi Y Yun, David Fenyo, Jef D Boeke
LINE-1 protein localization and functional dynamics during the cell cycle. eLife 7 (2018)
Yeon-Tae Jeong, Daniele Simoneschi, Sarah Keegan, David Melville, Natalia S Adler, Anita Saraf, Laurence Florens, Michael P Washburn, Claudio N Cavasotto, David Fenyo, Ana Maria Cuervo, Mario Rossi, Michele Pagano
The ULK1-FBXW5-SEC23B nexus controls autophagy. eLife 7 (2018)
Yu-Hung Chen, Sarah Keegan, Malik Kahli, Peter Tonzi, David Fenyo, Tony T Huang, Duncan J Smith
Transcription shapes DNA replication initiation and termination in human cells. Nature structural & molecular biology 26 (1) (2018)
Martin S Taylor, Ilya Altukhov, Kelly R Molloy, Paolo Mita, Hua Jiang, Emily M Adney, Aleksandra Wudzinska, Sana Badri, Dmitry Ischenko, George Eng, Kathleen H Burns, David Fenyo, Brian T Chait, Dmitry Alexeev, Michael P Rout, Jef D Boeke, John LaCava
Dissection of affinity captured LINE-1 macromolecular complexes. eLife 7 (2018)
Keria Bermudez-Hernandez, Sarah Keegan, Donna R Whelan, Dylan A Reid, Jennifer Zagelbaum, Yandong Yin, Sisi Ma, Eli Rothenberg, David Fenyo
A Method for Quantifying Molecular Interactions Using Stochastic Modelling and Super-Resolution Microscopy. Scientific reports 7 (1) (2017)
Xuya Wang, Arshag D Mooradian, Petra Erdmann Gilmore, Qiang Zhang, Rosa I Viner, Sherri R Davies, Kuan-Lin Huang, Ryan Bomgarden, Brian A Van Tine, Jieya Shao, Li Ding, Shunqiang Li, Matthew J Ellis, John C Rogers, R Reid Townsend, David Fenyo, Jason M Held
Breast tumors educate the proteome of stromal tissue in an individualized but coordinated manner. Science signaling 10 (491) (2017)
Leslie A Mitchell, Ann Wang, Giovanni Stracquadanio, Zheng Kuang, Xuya Wang, Kun Yang, Sarah M Richardson, J Andrew Martin, Yu Zhao, Roy S K Walker, Yisha Luo, Hongjiu Dai, Kang Dong, Zuojian Tang, Yanling Yang, Yizhi Cai, Adriana Heguy, Beatrix M Ueberheide, David Fenyo, Jun-Biao Dai, Joel S Bader, Jef D Boeke
Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond. Science (New York, N.Y.) 355 (6329) (2017)

David Fenyo.css-eqlu8i{font-size:small;padding-left:4px;} (David Fenyö)

Publication Activity (10 Years)

Top Topics

Top Venues

David Fenyo (David Fenyö)