Shengqiang Shu

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 29

Top Venues

Nature communications

Nature plants

Nature biotechnology

Genome research

University of Minnesota (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Minnesota

United States

PHD :: Entomology

Publications

Ran Zhou, Jerry W Jenkins, Yibing Zeng, Shengqiang Shu, Hosung Jang, Scott A Harding, Melissa Williams, Christopher Plott, Kerrie W Barry, Maxim Koriabine, Mojgan Amirebrahimi, Jayson Talag, Shanmugam Rajasekar, Jerry W Jenkins, Robert J Schmitz, R Kelly Dawe, Jeremy Schmutz, Chung-Jui Tsai
Haplotype-resolved genome assembly of Populus tremula × P. alba reveals aspen-specific megabase satellite DNA. The Plant journal : for cell and molecular biology (2023)
Avinash Sreedasyam, Christopher Plott, Md Shakhawat Hossain, John T Lovell, Jerry W Jenkins, Jerry W Jenkins, Christopher Daum, Kerrie Barry, Joseph Carlson, Shengqiang Shu, Jeremy Phillips, Mojgan Amirebrahimi, Matthew Zane, Mei Wang, David Goodstein, Fabian B Haas, Manuel Hiss, Pierre-François Perroud, Sara S Jawdy, Yongil Yang, Rongbin Hu, Jenifer Johnson, Janette Kropat, Sean D Gallaher, Anna Lipzen, Eugene V Shakirov, Xiaoyu Weng, Ivone Torres-Jerez, Brock Weers, Daniel Conde, Marilia R Pappas, Lifeng Liu, Andrew Muchlinski, Hui Jiang, Christine Shyu, Pu Huang, Jose Sebastian, Carol Laiben, Alyssa Medlin, Sankalpi Carey, Alyssa A Carrell, Jin-Gui Chen, Mariano Perales, Kankshita Swaminathan, Isabel Allona, Dario Grattapaglia, Elizabeth A Cooper, Dorothea Tholl, John P Vogel, David J Weston, Xiaohan Yang, Thomas P Brutnell, Elizabeth A Kellogg, Ivan R Baxter, Michael Udvardi, Yuhong Tang, Todd C Mockler, Thomas E Juenger, John E Mullet, Stefan Andreas Rensing, Gerald A Tuskan, Sabeeha S Merchant, Gary Stacey, Jeremy Schmutz
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic acids research (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants (2023)
Scott H Brainard, Dean M Sanders, Tomas Bruna, Shengqiang Shu, Julie C Dawson
The first two chromosome-scale genome assemblies of American hazelnut enable comparative genomic analysis of the genus Corylus. Plant biotechnology journal (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Li Lei, Sean P Gordon, Lifeng Liu, Nir Sade, John T Lovell, Maria Del Mar Rubio Wilhelmi, Vasanth Singan, Avinash Sreedasyam, Rachel Hestrin, Jeremy Phillips, Bryan T Hernandez, Kerrie Barry, Shengqiang Shu, Jerry W Jenkins, Jeremy Schmutz, David M Goodstein, Roger Thilmony, Eduardo Blumwald, John P Vogel
The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum. G3 (Bethesda, Md.) (2023)
Rory J Craig, Sean D Gallaher, Shengqiang Shu, Patrice A Salomé, Jerry W Jenkins, Crysten E Blaby-Haas, Samuel Owen Purvine, Samuel O'Donnell, Kerrie W Barry, Jerry W Jenkins, Daniela Strenkert, Janette Kropat, Christopher Daum, Yuko Yoshinaga, David M Goodstein, Olivier Vallon, Jeremy Schmutz, Sabeeha S Merchant
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory. The Plant cell 35 (2) (2023)
Adam L Healey, Bryan T Piatkowski, John T Lovell, Avinash Sreedasyam, Sarah B Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W Jenkins, Travis Lawrence, Blanka Aguero, Alyssa A Carrell, Marta Nieto-Lugilde, Jayson Talag, Aaron Duffy, Sara Jawdy, Kelsey R Carter, Lori-Beth Boston, Teresa Jones, Juan Jaramillo-Chico, Alex Harkess, Kerrie Barry, Keykhosrow Keymanesh, Diane Bauer, Jerry W Jenkins, Lee Gunter, Jeremy Schmutz, David J Weston, A Jonathan Shaw
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Nature plants 9 (2) (2023)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Jessen V Bredeson, Jessica B Lyons, Ibukun O Oniyinde, Nneka R Okereke, Olufisayo Kolade, Ikenna Nnabue, Christian O Nwadili, Eva Hřibová, Matthew Parker, Jeremiah Nwogha, Shengqiang Shu, Joseph Carlson, Robert Kariba, Samuel Muthemba, Katarzyna Knop, Geoffrey John Barton, Anna V Sherwood, Antonio Lopez-Montes, Robert Asiedu, Ramni Jamnadass, Alice Muchugi, David M Goodstein, Chiedozie N Egesi, Jonathan Featherston, Asrat Asfaw, Gordon G Simpson, Jaroslav Dolezel, Prasad S Hendre, Allen Van Deynze, Pullikanti Lava Kumar, Jude Ejikeme Obidiegwu, Ranjana Bhattacharjee, Daniel S Rokhsar
Chromosome evolution and the genetic basis of agronomically important traits in greater yam. Nature communications 13 (1) (2022)
J Mitchell McGrath, Andrew Funk, Paul Galewski, Shujun Ou, Belinda Townsend, Karen Davenport, Hajnalka Daligault, Shannon Lynn Johnson, Joyce Lee, Alex Hastie, Aude Darracq, Glenda Willems, Steve Barnes, Ivan Liachko, Shawn Sullivan, Sergey Koren, Adam Phillippy, Jie Wang, Tiffany Liu, Jane Pulman, Kevin Childs, Shengqiang Shu, Anastasia Yocum, Damian Fermin, Effie Mutasa-Göttgens, Piergiorgio Stevanato, Kazunori Taguchi, Rachel P Naegele, Kevin Dorn
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.). DNA research : an international journal for rapid publication of reports on genes and genomes (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
D Blaine Marchant, Guang Chen, Shengguan Cai, Fei Chen, Peter Schafran, Jerry W Jenkins, Shengqiang Shu, Christopher Plott, Jenell Webber, John T Lovell, Guifen He, Laura Sandor, Melissa Williams, Shanmugam Rajasekar, Adam Healey, Kerrie Barry, Yinwen Zhang, Emily Sessa, Rijan R Dhakal, Paul G Wolf, Alex Harkess, Fay-Wei Li, Clemens Rössner, Annette Becker, Lydia Gramzow, Dawei Xue, Yuhuan Wu, Tao Tong, Yuanyuan Wang, Fei Dai, Shuijin Hua, Hua Wang, Shengchun Xu, Fei Xu, Honglang Duan, Günter Theißen, Michael R McKain, Zheng Li, Michael T W McKibben, Michael S Barker, Robert J Schmitz, Dennis W Stevenson, Cecilia Zumajo-Cardona, Barbara A Ambrose, James H Leebens-Mack, Jerry W Jenkins, Jeremy Schmutz, Pamela S Soltis, Douglas E Soltis, Zhong-Hua Chen
Dynamic genome evolution in a model fern. Nature plants 8 (9) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
William P Bewg, Scott A Harding, Nancy L Engle, Brajesh N Vaidya, Ran Zhou, Jacob Reeves, Thomas W Horn, Nirmal Joshee, Jerry W Jenkins, Shengqiang Shu, Kerrie W Barry, Yuko Yoshinaga, Jerry W Jenkins, Robert J Schmitz, Jeremy Schmutz, Timothy J Tschaplinski, Chung-Jui Tsai
Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA. Plant physiology 189 (2) (2022)
Yue Hao, Makenzie E Mabry, Patrick P Edger, Michael Freeling, Chunfang Zheng, Lingling Jin, Robert VanBuren, Marivi Colle, Hong An, R Shawn Abrahams, Jacob D Washburn, Xinshuai Qi, Kerrie W Barry, Christopher Daum, Shengqiang Shu, Jeremy Schmutz, David Sankoff, Michael S Barker, Eric Lyons, Joseph Chris Pires, Gavin C Conant
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. Genome research 31 (5) (2021)
John T Lovell, Alice H MacQueen, Sujan Mamidi, Jason Bonnette, Jerry W Jenkins, Joseph D Napier, Avinash Sreedasyam, Adam Healey, Adam Session, Shengqiang Shu, Kerrie Barry, Stacy Bonos, LoriBeth Boston, Christopher Daum, Shweta Deshpande, Aren Ewing, Paul P Grabowski, Taslima Haque, Melanie Harrison, Jiming Jiang, David A Kudrna, Anna Lipzen, Thomas H Pendergast Iv, Chris Plott, Peng Qi, Christopher A Saski, Eugene V Shakirov, David Sims, Manoj Sharma, Rita Sharma, Ada Stewart, Vasanth R Singan, Yuhong Tang, Sandra Thibivillier, Jenell Webber, Xiaoyu Weng, Melissa Williams, Guohong Albert Wu, Yuko Yoshinaga, Matthew Zane, Li Zhang, Jiyi Zhang, Kathrine D Behrman, Arvid R Boe, Philip A Fay, Felix B Fritschi, Julie D Jastrow, John Lloyd-Reilley, Juan Manuel Martínez-Reyna, Roser Matamala, Robert B Mitchell, Francis M Rouquette, Pamela C Ronald, Malay Saha, Christian M Tobias, Michael K Udvardi, Rod A Wing, Yanqi Wu, Laura E Bartley, Michael Casler, Katrien M Devos, David B Lowry, Daniel S Rokhsar, Jerry W Jenkins, Thomas E Juenger, Jeremy Schmutz
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature 590 (7846) (2021)
Sarah B Carey, Jerry W Jenkins, John T Lovell, Florian Maumus, Avinash Sreedasyam, Adam C Payton, Shengqiang Shu, George P Tiley, Noe Fernandez Pozo, Adam L Healey, Kerrie W Barry, Cindy Chen, Mei Wang, Anna Lipzen, Christopher Daum, Christopher A Saski, Jordan C McBreen, Roth E Conrad, Leslie M Kollar, Sanna Olsson, Sanna Huttunen, Jacob B Landis, J Gordon Burleigh, Norman J Wickett, Matthew G Johnson, Stefan Andreas Rensing, Jerry W Jenkins, Jeremy Schmutz, Stuart F McDaniel
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science advances 7 (27) (2021)
Adam L Healey, Mervyn Shepherd, Graham J King, Jakob B Butler, Jules S Freeman, David J Lee, Brad M Potts, Orzenil B Silva-Junior, Abdul Baten, Jerry W Jenkins, Shengqiang Shu, John T Lovell, Avinash Sreedasyam, Jerry W Jenkins, Agnelo Furtado, Dario Grattapaglia, Kerrie W Barry, Hope Hundley, Blake A Simmons, Jeremy Schmutz, René E Vaillancourt, Robert James Henry
Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Communications biology 4 (1) (2021)
John T Lovell, Nolan B Bentley, Gaurab Bhattarai, Jerry W Jenkins, Avinash Sreedasyam, Yanina Alarcon, Clive Bock, Lori Beth Boston, Joseph Carlson, Kimberly Cervantes, Kristen Clermont, Sara Duke, Nick Krom, Keith Kubenka, Sujan Mamidi, Christopher P Mattison, Maria J Monteros, Cristina Pisani, Christopher Plott, Shanmugam Rajasekar, Hormat Shadgou Rhein, Charles Rohla, Mingzhou Song, Rolston St Hilaire, Shengqiang Shu, Lenny Wells, Jenell Webber, Richard J Heerema, Patricia E Klein, Patrick Conner, Xinwang Wang, L J Grauke, Jerry W Jenkins, Jeremy Schmutz, Jennifer J Randall
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding. Nature communications 12 (1) (2021)
Sujan Mamidi, Adam Healey, Pu Huang, Jerry W Jenkins, Jerry W Jenkins, Kerrie Barry, Avinash Sreedasyam, Shengqiang Shu, John T Lovell, Maximilian Feldman, Jinxia Wu, Yunqing Yu, Cindy Chen, Jenifer Johnson, Hitoshi Sakakibara, Takatoshi Kiba, Tetsuya Sakurai, Rachel Tavares, Dmitri A Nusinow, Ivan Baxter, Jeremy Schmutz, Thomas P Brutnell, Elizabeth A Kellogg
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nature biotechnology 38 (10) (2020)
Z Jeffrey Chen, Avinash Sreedasyam, Atsumi Ando, Qingxin Song, Luis M De Santiago, Amanda M Hulse-Kemp, Mingquan Ding, Wenxue Ye, Ryan C Kirkbride, Jerry W Jenkins, Christopher Plott, John Lovell, Yu-Ming Lin, Robert Vaughn, Bo Liu, Sheron Simpson, Brian E Scheffler, Li Wen, Christopher A Saski, Corrinne E Grover, Guanjing Hu, Justin L Conover, Joseph W Carlson, Shengqiang Shu, Lori B Boston, Melissa Williams, Daniel G Peterson, Keith McGee, Don C Jones, Jonathan F Wendel, David M Stelly, Jerry W Jenkins, Jeremy Schmutz
Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nature genetics 52 (5) (2020)
Therese Mitros, Adam M Session, Brandon T James, Guohong Albert Wu, Mohammad B Belaffif, Lindsay V Clark, Shengqiang Shu, Hongxu Dong, Adam Barling, Jessica R Holmes, Jessica E Mattick, Jessen V Bredeson, Siyao Liu, Kerrie Farrar, Katarzyna Głowacka, Stanisław Jeżowski, Kerrie Barry, Won Byoung Chae, John A Juvik, Justin Gifford, Adebosola Oladeinde, Toshihiko Yamada, Jerry W Jenkins, Nicholas H Putnam, Jose J De Vega, Susanne Barth, Manfred Klaas, Trevor Hodkinson, Lai-Geng Li, Xiaoli Jin, Junhua Peng, Chang Yeon Yu, Kweon Heo, Ji Hye Yoo, Bimal Kumar Ghimire, Iain S Donnison, Jeremy Schmutz, Matthew E Hudson, Erik J Sacks, Stephen P Moose, Kankshita Swaminathan, Daniel S Rokhsar
Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nature communications 11 (1) (2020)
Sean P Gordon, Bruno Contreras-Moreira, Joshua J Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S Tartaglio, Adam Session, Joel A Martin, Amy Cartwright, Andrew Katz, Vasanth R Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H Doonan, Luis Alejandro Jose Mur, Chris Plott, Jerry W Jenkins, Samuel P Hazen, Scott J Lee, Shengqiang Shu, David M Goodstein, Daniel S Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P Vogel
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature communications 11 (1) (2020)
Steven R Larson, Lee DeHaan, Jesse A Poland, Xiaofei Zhang, Kevin M Dorn, Traci Hagedorn, James A Anderson, Jeremy Schmutz, Jerry W Jenkins, Jerry W Jenkins, Shengqiang Shu, Jared L Crain, Matthew D Robbins, Kevin Jensen
Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 132 (8) (2019)
John T Lovell, Jerry W Jenkins, David B Lowry, Sujan Mamidi, Avinash Sreedasyam, Xiaoyu Weng, Kerrie Barry, Jason Bonnette, Brandon Campitelli, Chris Daum, Sean P Gordon, Billie A Gould, Albina Khasanova, Anna Lipzen, Alice H MacQueen, Juan Diego Palacio-Mejía, Christopher Plott, Eugene V Shakirov, Shengqiang Shu, Yuko Yoshinaga, Matt Zane, Dave Kudrna, Jason D Talag, Daniel Rokhsar, Jane Grimwood, Jeremy Schmutz, Thomas E Juenger
The genomic landscape of molecular responses to natural drought stress in Panicum hallii. Nature communications 9 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Shengqiang Shu