Douglas H Phanstiel (D H Phanstiel)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 23

Top Topics

Amyotrophic Lateral Sclerosis

Dna Methylation

Top Venues

Bioinformatics (Oxford, England)

bioRxiv : the preprint server for biology

Bioinformatics advances

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Nicole E Kramer, Philip R Coryell, Susan D'Costa, Eliza Thulson, Seyoun Byun, HyunAh Kim, Sylvie M Parkus, Marielle L Bond, Jacqueline Yalin S Shin Sahin, Susanna Chubinskaya, Michael I Love, Karen L Mohlke, Brian O Diekman, Richard F Loeser, Douglas H Phanstiel
Response eQTLs, chromatin accessibility, and 3D chromatin structure in chondrocytes provide mechanistic insight into osteoarthritis risk. bioRxiv : the preprint server for biology (2024)
Baggio A Evangelista, Joey V Ragusa, Kyle Pellegrino, Yija Wu, Ivana Yoseli Quiroga-Barber, Shannon R Cahalan, Omeed K Arooji, Jillann A Madren, Sally Schroeter, Joe Cozzarin, Ling Xie, Xian Chen, Kristen K White, J Ashley Ezzell, Marie A Iannone, Stephanie M Cohen, Rebecca E Traub, Xiaoyan Li, Richard Bedlack, Douglas H Phanstiel, Rick B Meeker, Natalie Stanley, Todd J Cohen
TDP-43 pathology links innate and adaptive immunity in amyotrophic lateral sclerosis. bioRxiv : the preprint server for biology (2024)
Baggio A Evangelista, Joey V Ragusa, Kyle Pellegrino, Yija Wu, Ivana Yoseli Quiroga-Barber, Shannon R Cahalan, Omeed K Arooji, Jillann A Madren, Sally Schroeter, Joe Cozzarin, Ling Xie, Xian Chen, Kristen K White, J Ashley Ezzell, Marie A Iannone, Stephanie M Cohen, Rebecca E Traub, Xiaoyan Li, Richard Bedlack, Douglas H Phanstiel, Rick B Meeker, Natalie Stanley, Todd J Cohen
TDP-43 pathology links innate and adaptive immunity in amyotrophic lateral sclerosis. bioRxiv : the preprint server for biology (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
Nicole E Kramer, Philip R Coryell, Susan D'Costa, Eliza Thulson, Seyoun Byun, HyunAh Kim, Sylvie M Parkus, Marielle L Bond, Jacqueline Yalin S Shin Sahin, Susanna Chubinskaya, Michael I Love, Karen L Mohlke, Brian O Diekman, Richard F Loeser, Douglas H Phanstiel
Response eQTLs, chromatin accessibility, and 3D chromatin structure in chondrocytes provide mechanistic insight into osteoarthritis risk. bioRxiv : the preprint server for biology (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
Michael W Lewis, Caitlin M King, Kamila Wisniewska, Matthew J Regner, Alisha R Coffey, Michael R Kelly, Raúl Méndez Giráldez, Eric S Davis, Douglas H Phanstiel, Hector L Franco
CRISPR Screening of Transcribed Super-Enhancers Identifies Drivers of Triple-Negative Breast Cancer Progression. Cancer research (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
Sarah M Parker, Eric S Davis, Douglas H Phanstiel
Guiding the design of well-powered Hi-C experiments to detect differential loops. bioRxiv : the preprint server for biology (2023)
Sarah M Parker, Eric S Davis, Douglas H Phanstiel
Guiding the design of well-powered Hi-C experiments to detect differential loops. bioRxiv : the preprint server for biology (2023)
Marielle L Bond, Eric S Davis, Ivana Yoseli Quiroga-Barber, Anubha Dey, Manjari Kiran, Michael I Love, Hyejung Won, Douglas H Phanstiel
Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features. Genome research (2023)
Hannah L Harris, Huiya Gu, Moshe Olshansky, Ailun Wang, Irene Farabella, Yossi Eliaz, Achyuth Kalluchi, Akshay Krishna, Mozes Jacobs, Gesine Cauer, Melanie Pham, Suhas S P Rao, Olga Dudchenko, Arina Omer, Kiana Mohajeri, Sungjae Kim, Michael H Nichols, Eric S Davis, Dimos Gkountaroulis, Devika Udupa, Aviva Presser Aiden, Victor G Corces, Douglas H Phanstiel, William Stafford Noble, Guy Nir, Michele Di Pierro, Jeong-Sun Seo, Michael E Talkowski, Erez Lieberman Aiden, M Jordan Rowley
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization. Nature communications 14 (1) (2023)
Sarah M Parker, Eric S Davis, Douglas H Phanstiel
Guiding the design of well-powered Hi-C experiments to detect differential loops. Bioinformatics advances 3 (1) (2023)
Eric S Davis, Wancen Mu, Stuart Lee, Mikhail G Dozmorov, Michael I Love, Douglas H Phanstiel
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling. Bioinformatics (Oxford, England) 39 (5) (2023)
Eric S Davis, Wancen Mu, Stuart Lee, Mikhail G Dozmorov, Michael I Love, Douglas H Phanstiel
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling. Bioinformatics (Oxford, England) 39 (5) (2023)
Nicole E Kramer, Eric S Davis, Craig D Wenger, Erika M Deoudes, Sarah M Parker, Michael I Love, Douglas H Phanstiel
Plotgardener: cultivating precise multi-panel figures in R. Bioinformatics (Oxford, England) 38 (7) (2022)
Eliza Thulson, Eric S Davis, Susan D'Costa, Philip R Coryell, Nicole E Kramer, Karen L Mohlke, Richard F Loeser, Brian O Diekman, Douglas H Phanstiel
3D chromatin structure in chondrocytes identifies putative osteoarthritis risk genes. Genetics 222 (4) (2022)
Michael R Kelly, Kamila Wisniewska, Matthew J Regner, Michael W Lewis, Andrea A Perreault, Eric S Davis, Douglas H Phanstiel, Joel S Parker, Hector L Franco
A multi-omic dissection of super-enhancer driven oncogenic gene expression programs in ovarian cancer. Nature communications 13 (1) (2022)
Mikhail G Dozmorov, Wancen Mu, Eric S Davis, Stuart Lee, Timothy J Triche, Douglas H Phanstiel, Michael I Love
CTCF: an R/bioconductor data package of human and mouse CTCF binding sites. Bioinformatics advances 2 (1) (2022)
Mikhail G Dozmorov, Wancen Mu, Eric S Davis, Stuart Lee, Timothy J Triche, Douglas H Phanstiel, Michael I Love
CTCF: an R/bioconductor data package of human and mouse CTCF binding sites. Bioinformatics advances 2 (1) (2022)
I Y Quiroga, A E Cruikshank, M L Bond, K S M Reed, B A Evangelista, J H Tseng, J V Ragusa, R B Meeker, H Won, S Cohen, T J Cohen, Douglas H Phanstiel
Synthetic amyloid beta does not induce a robust transcriptional response in innate immune cell culture systems. Journal of neuroinflammation 19 (1) (2022)
Jeong Hyun Ahn, Eric S Davis, Timothy A Daugird, Shuai Zhao, Ivana Yoseli Quiroga-Barber, Hidetaka Uryu, Jie Li, Aaron J Storey, Yi-Hsuan Tsai, Daniel P Keeley, Samuel G Mackintosh, Ricky D Edmondson, Stephanie D Byrum, Ling Cai, Alan J Tackett, Deyou Zheng, Wesley R Legant, Douglas H Phanstiel, Gang Greg Wang
Phase separation drives aberrant chromatin looping and cancer development. Nature 595 (7868) (2021)