Eric S Davis

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 21

Top Topics

Kidney Transplantation

Electronic Health Record

Genome Wide Association Study

Top Venues

Bioinformatics (Oxford, England)

Bioinformatics advances

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
Michael W Lewis, Caitlin M King, Kamila Wisniewska, Matthew J Regner, Alisha R Coffey, Michael R Kelly, Raúl Méndez Giráldez, Eric S Davis, Douglas H Phanstiel, Hector L Franco
CRISPR Screening of Transcribed Super-Enhancers Identifies Drivers of Triple-Negative Breast Cancer Progression. Cancer research (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
Eric S Davis, Sarah M Parker, Nicole E Kramer, J P Flores, Manjari Kiran, Douglas H Phanstiel
Mariner: explore the Hi-Cs. Bioinformatics (Oxford, England) 40 (6) (2024)
Sarah M Parker, Eric S Davis, Douglas H Phanstiel
Guiding the design of well-powered Hi-C experiments to detect differential loops. bioRxiv : the preprint server for biology (2023)
Sarah M Parker, Eric S Davis, Douglas H Phanstiel
Guiding the design of well-powered Hi-C experiments to detect differential loops. bioRxiv : the preprint server for biology (2023)
Marielle L Bond, Eric S Davis, Ivana Yoseli Quiroga-Barber, Anubha Dey, Manjari Kiran, Michael I Love, Hyejung Won, Douglas H Phanstiel
Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features. Genome research (2023)
Hannah L Harris, Huiya Gu, Moshe Olshansky, Ailun Wang, Irene Farabella, Yossi Eliaz, Achyuth Kalluchi, Akshay Krishna, Mozes Jacobs, Gesine Cauer, Melanie Pham, Suhas S P Rao, Olga Dudchenko, Arina Omer, Kiana Mohajeri, Sungjae Kim, Michael H Nichols, Eric S Davis, Dimos Gkountaroulis, Devika Udupa, Aviva Presser Aiden, Victor G Corces, Douglas H Phanstiel, William Stafford Noble, Guy Nir, Michele Di Pierro, Jeong-Sun Seo, Michael E Talkowski, Erez Lieberman Aiden, M Jordan Rowley
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization. Nature communications 14 (1) (2023)
Sarah M Parker, Eric S Davis, Douglas H Phanstiel
Guiding the design of well-powered Hi-C experiments to detect differential loops. Bioinformatics advances 3 (1) (2023)
Eric S Davis, Wancen Mu, Stuart Lee, Mikhail G Dozmorov, Michael I Love, Douglas H Phanstiel
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling. Bioinformatics (Oxford, England) 39 (5) (2023)
Eric S Davis, Wancen Mu, Stuart Lee, Mikhail G Dozmorov, Michael I Love, Douglas H Phanstiel
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling. Bioinformatics (Oxford, England) 39 (5) (2023)
Eliza Thulson, Eric S Davis, Susan D'Costa, Philip R Coryell, Nicole E Kramer, Karen L Mohlke, Richard F Loeser, Brian O Diekman, Douglas H Phanstiel
3D chromatin structure in chondrocytes identifies putative osteoarthritis risk genes. Genetics 222 (4) (2022)
Michael R Kelly, Kamila Wisniewska, Matthew J Regner, Michael W Lewis, Andrea A Perreault, Eric S Davis, Douglas H Phanstiel, Joel S Parker, Hector L Franco
A multi-omic dissection of super-enhancer driven oncogenic gene expression programs in ovarian cancer. Nature communications 13 (1) (2022)
Mikhail G Dozmorov, Wancen Mu, Eric S Davis, Stuart Lee, Timothy J Triche, Douglas H Phanstiel, Michael I Love
CTCF: an R/bioconductor data package of human and mouse CTCF binding sites. Bioinformatics advances 2 (1) (2022)
Mikhail G Dozmorov, Wancen Mu, Eric S Davis, Stuart Lee, Timothy J Triche, Douglas H Phanstiel, Michael I Love
CTCF: an R/bioconductor data package of human and mouse CTCF binding sites. Bioinformatics advances 2 (1) (2022)
Jeong Hyun Ahn, Eric S Davis, Timothy A Daugird, Shuai Zhao, Ivana Yoseli Quiroga-Barber, Hidetaka Uryu, Jie Li, Aaron J Storey, Yi-Hsuan Tsai, Daniel P Keeley, Samuel G Mackintosh, Ricky D Edmondson, Stephanie D Byrum, Ling Cai, Alan J Tackett, Deyou Zheng, Wesley R Legant, Douglas H Phanstiel, Gang Greg Wang
Phase separation drives aberrant chromatin looping and cancer development. Nature 595 (7868) (2021)