Fergus Shanahan (F Shanahan)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 26

Top Venues

Nature

Communications biology

Nature reviews. Gastroenterology & hepatology

Alimentary pharmacology & therapeutics

University College Cork

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University College Cork

Ireland

emeritus Professor :: Medicine

Publications

Junhui Li, Tarini Shankar Ghosh, Elke K Arendt, Fergus Shanahan, Paul W O' Toole
Cross-Cohort Gut Microbiome Signatures of Irritable Bowel Syndrome Presentation and Treatment. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Stephen R Stockdale, Andrey N Shkoporov, Ekaterina V Khokhlova, Karen M Daly, Siobhan A McDonnell, Orla O' Regan, James A Nolan, Thomas D S Sutton, Adam G Clooney, Feargal J Ryan, Donal Sheehan, Aonghus Lavelle, Lorraine A Draper, Fergus Shanahan, R Paul Ross, Colin Hill
Interpersonal variability of the human gut virome confounds disease signal detection in IBD. Communications biology 6 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Stephen R Stockdale, Andrey N Shkoporov, Ekaterina V Khokhlova, Karen M Daly, Siobhan A McDonnell, Orla O' Regan, James A Nolan, Thomas D S Sutton, Adam G Clooney, Feargal J Ryan, Donal Sheehan, Aonghus Lavelle, Lorraine A Draper, Fergus Shanahan, R Paul Ross, Colin Hill
Interpersonal variability of the human gut virome confounds disease signal detection in IBD. Communications biology 6 (1) (2023)
Stephen R Stockdale, Andrey N Shkoporov, Ekaterina V Khokhlova, Karen M Daly, Siobhan A McDonnell, Orla O' Regan, James A Nolan, Thomas D S Sutton, Adam G Clooney, Feargal J Ryan, Donal Sheehan, Aonghus Lavelle, Lorraine A Draper, Fergus Shanahan, R Paul Ross, Colin Hill
Interpersonal variability of the human gut virome confounds disease signal detection in IBD. Communications biology 6 (1) (2023)
Conor Feehily, Ian J O'Neill, Calum J Walsh, Rebecca L Moore, Sarah Louise Killeen, Aisling A Geraghty, Elaine M Lawton, David Byrne, Rocio Sanchez-Gallardo, Sai Ravi Chandra Nori, Ida Busch Nielsen, Esther Wortmann, Elizabeth Matthews, Roisin O'Flaherty, Pauline M Rudd, David Groeger, Fergus Shanahan, Radka Saldova, Fionnuala M McAuliffe, Douwe Van Sinderen, Paul D Cotter
Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach. Nature communications 14 (1) (2023)
Stephen R Stockdale, Andrey N Shkoporov, Ekaterina V Khokhlova, Karen M Daly, Siobhan A McDonnell, Orla O' Regan, James A Nolan, Thomas D S Sutton, Adam G Clooney, Feargal J Ryan, Donal Sheehan, Aonghus Lavelle, Lorraine A Draper, Fergus Shanahan, R Paul Ross, Colin Hill
Interpersonal variability of the human gut virome confounds disease signal detection in IBD. Communications biology 6 (1) (2023)
Stephen R Stockdale, Andrey N Shkoporov, Ekaterina V Khokhlova, Karen M Daly, Siobhan A McDonnell, Orla O' Regan, James A Nolan, Thomas D S Sutton, Adam G Clooney, Feargal J Ryan, Donal Sheehan, Aonghus Lavelle, Lorraine A Draper, Fergus Shanahan, R Paul Ross, Colin Hill
Interpersonal variability of the human gut virome confounds disease signal detection in IBD. Communications biology 6 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Fergus Shanahan, Tarini S Ghosh, Michael G Molloy, Paul W O'Toole
The nonindustrialised microbiome in a modern world. Clinical science (London, England : 1979) 136 (22) (2022)
Stephen R Stockdale, R S Harrington, A N Shkoporov, E V Khokhlova, K M Daly, S A McDonnell, O O'Reagan, J A Nolan, D Sheehan, A Lavelle, L A Draper, Fergus Shanahan, R P Ross, Colin Hill
Metagenomic assembled plasmids of the human microbiome vary across disease cohorts. Scientific reports 12 (1) (2022)
Tarini Shankar Ghosh, Fergus Shanahan, Paul W O' Toole
The gut microbiome as a modulator of healthy ageing. Nature reviews. Gastroenterology & hepatology 19 (9) (2022)
Jerzy A Woznicki, Nisha Saini, Peter Flood, Subhasree Rajaram, Ciaran M Lee, Panagiota Stamou, Agnieszka Skowyra, Milan Bustamante-Garrido, Karine Regazzoni, Nyree Crawford, Simon S McDade, Daniel B Longley, Pedro Aza-Blanc, Fergus Shanahan, Syed A Zulquernain, Jane McCarthy, Silvia Melgar, Bradford L McRae, Ken Nally
TNF-α synergises with IFN-γ to induce caspase-8-JAK1/2-STAT1-dependent death of intestinal epithelial cells. Cell death & disease 12 (10) (2021)
John O'Grady, Eibhlís M O'Connor, Fergus Shanahan
Review article: dietary fibre in the era of microbiome science. Alimentary pharmacology & therapeutics 49 (5) (2020)
David M Keohane, Tarini Shankar Ghosh, Ian B Jeffery, Michael G Molloy, Paul W O'Toole, Fergus Shanahan
Microbiome and health implications for ethnic minorities after enforced lifestyle changes. Nature medicine 26 (7) (2020)
Jerzy A Woznicki, Peter Flood, Milan Bustamante-Garrido, Panagiota Stamou, Gerry Moloney, Aine Fanning, Syed Akbar Zulquernain, Jane McCarthy, Fergus Shanahan, Silvia Melgar, Ken Nally
Human BCL-G regulates secretion of inflammatory chemokines but is dispensable for induction of apoptosis by IFN-γ and TNF-α in intestinal epithelial cells. Cell death & disease 11 (1) (2020)
Feargal Joseph Ryan, A M Ahern, Rachel S Fitzgerald, Emilio José Laserna-Mendieta, E M Power, A G Clooney, K W O'Donoghue, Paul J McMurdie, S Iwai, A Crits-Christoph, D Sheehan, C Moran, B Flemer, A L Zomer, Aine Fanning, J O'Callaghan, J Walton, Andriy Temko, W Stack, L Jackson, Susan A Joyce, S Melgar, T Z DeSantis, Jordana T Bell, Fergus Shanahan, Marcus Joakim Claesson
Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease. Nature communications 11 (1) (2020)
John O'Grady, Fergus Shanahan
Letter: dietary fibre benefits for the oesophagus-physical rather than metabolic action? Authors' reply. Alimentary pharmacology & therapeutics 49 (10) (2020)
Fergus Shanahan, Colin Hill
Language, numeracy and logic in microbiome science. Nature reviews. Gastroenterology & hepatology 16 (7) (2019)
Susan V Lynch, William K K Wu, Fergus Shanahan, Herbert Tilg
Translating the gut microbiome: ready for the clinic? Nature reviews. Gastroenterology & hepatology 16 (11) (2019)
Fergus Shanahan
Editorial: probiotics in inflammatory bowel disease-wrong organisms, wrong disease, or flawed concepts? Alimentary pharmacology & therapeutics 46 (6) (2017)

Fergus Shanahan.css-eqlu8i{font-size:small;padding-left:4px;} (F Shanahan)

Publication Activity (10 Years)

Top Topics

Top Venues

Fergus Shanahan (F Shanahan)