Paul D Cotter (P D Cotter)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 102

Top Venues

Gut microbes

Microbiology and molecular biology reviews : MMBR

Applied and environmental microbiology

Journal of food science

University College Cork

University College Cork (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University College Cork Oct 01 2007 - Jan 31 2009

Ireland

Full Time Lecturer :: Microbiology

University College Cork Oct 01 2005 - Jan 31 2009

Ireland

Principal Investigator :: Microbiology

Cork Institute of Technology Sep 01 2005 - May 01 2007

Ireland

Part-time lecturer :: Biological Sciences

University College Cork Jul 01 2002 - May 01 2007

Ireland

Senior Research Fellow :: Microbiology

University College Cork Feb 01 2001 - Jun 01 2002

Ireland

Post-doctoral researcher :: National Food Biotechnology Centre

Education History

University College Cork Oct 01 1996 - Feb 01 2001

Ireland

PHD :: Microbiology

University College Cork Oct 01 1992 - Jun 01 1996

Ireland

BSC :: Microbiology

Publications

Liam H Walsh, Cian O' Mahony, Paul D Cotter
The changing landscape with respect to scientific research and education for second-level students and how they can overlap: the Kefir4All example. Journal of microbiology & biology education (2024)
Dearbhla Finnegan, Claire Connolly, Monica A Mechoud, Jamie A FitzGerald, Tom Beresford, Harsh Mathur, Lorraine Brennan, Paul D Cotter, Christine E Loscher
Novel Dairy Fermentates Have Differential Effects on Key Immune Responses Associated with Viral Immunity and Inflammation in Dendritic Cells. Foods (Basel, Switzerland) 13 (15) (2024)
Liam H Walsh, Samuel Breselge, José Guilherme Prado Martin, Mairéad Coakley, Eimear Ferguson, Aimee Stapleton, Fiona Crispie, Paul W O' Toole, Paul D Cotter
Kefir4All, a citizen science initiative to raise awareness of the roles that microbes play in food fermentation. Journal of microbiology & biology education 25 (1) (2024)
Francesca De Filippis, Vincenzo Valentino, Min Yap, Raul Cabrera-Rubio, Coral Barcenilla, Niccolò Carlino, José F Cobo-Díaz, Narciso Martín Quijada, Inés Calvete-Torre, Patricia Ruas-Madiedo, Carlos Sabater, Giuseppina Sequino, Edoardo Pasolli, Martin Wagner, Abelardo Margolles, Nicola Segata, Avelino Alvarez-Ordóñez, Paul D Cotter, Danilo Ercolini
Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities. NPJ biofilms and microbiomes 10 (1) (2024)
Cathy Lordan, Aoife K Roche, Dianne Delsing, Arjen Nauta, Andre Groeneveld, John MacSharry, Paul D Cotter, Douwe Van Sinderen
Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond. Microbiology and molecular biology reviews : MMBR 88 (1) (2024)
Cathy Lordan, Aoife K Roche, Dianne Delsing, Arjen Nauta, Andre Groeneveld, John MacSharry, Paul D Cotter, Douwe Van Sinderen
Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond. Microbiology and molecular biology reviews : MMBR 88 (1) (2024)
Lisa Friess, Francesca Bottacini, Fionnuala M Mcauliffe, Ian J O'Neill, Paul D Cotter, Ciaran M Lee, Jose Munoz-Munoz, Douwe van Sinderen
Two extracellular α-arabinofuranosidases are required for cereal-derived arabinoxylan metabolism by Bifidobacterium longum subsp. longum . Gut microbes 16 (1) (2024)
Rocio Sanchez-Gallardo, Paula M O'Connor, Ian J O'Neill, Brian McDonnell, Ciaran M Lee, Rebecca L Moore, Fionnuala M Mcauliffe, Paul D Cotter, Douwe van Sinderen
Pseudocin 196, a novel lantibiotic produced by Bifidobacterium pseudocatenulatum elicits antimicrobial activity against clinically relevant pathogens. Gut microbes 16 (1) (2024)
Ajay Iyer, Arghya Mukherjee, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
The impact of live dietary microbes on health: A scoping review. Journal of food science 89 (2) (2024)
Gillian McDermott, Aaron Walsh, Fiona Crispie, Susanna Frost, Peter Greally, Paul D Cotter, Orla O'Sullivan, Julie Renwick
Insights into the Adolescent Cystic Fibrosis Airway Microbiome Using Shotgun Metagenomics. International journal of molecular sciences 25 (7) (2024)
Nathaniel L Ritz, Lorraine A Draper, Thomaz F S Bastiaanssen, Christopher J R Turkington, Veronica L Peterson, Marcel van de Wouw, Klara Vlckova, Christine Fülling, Katherine E Guzzetta, Aurelijus Burokas, Hugh Harris, Marion Dalmasso, Fiona Crispie, Paul D Cotter, Andrey N Shkoporov, Gerard M Moloney, Timothy G Dinan, Colin Hill, John F Cryan
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice. Nature microbiology 9 (2) (2024)
Nathaniel L Ritz, Lorraine A Draper, Thomaz F S Bastiaanssen, Christopher J R Turkington, Veronica L Peterson, Marcel van de Wouw, Klara Vlckova, Christine Fülling, Katherine E Guzzetta, Aurelijus Burokas, Hugh Harris, Marion Dalmasso, Fiona Crispie, Paul D Cotter, Andrey N Shkoporov, Gerard M Moloney, Timothy G Dinan, Colin Hill, John F Cryan
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice. Nature microbiology 9 (2) (2024)
Dearbhla Finnegan, Monica A Mechoud, Jamie A FitzGerald, Tom Beresford, Harsh Mathur, Paul D Cotter, Christine Loscher
Novel Fermentates Can Enhance Key Immune Responses Associated with Viral Immunity. Nutrients 16 (8) (2024)
Ajay Iyer, Arghya Mukherjee, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
The impact of live dietary microbes on health: A scoping review. Journal of food science 89 (2) (2024)
Dearbhla Finnegan, Claire Connolly, Monica A Mechoud, Jamie A FitzGerald, Tom Beresford, Harsh Mathur, Lorraine Brennan, Paul D Cotter, Christine E Loscher
Novel Dairy Fermentates Have Differential Effects on Key Immune Responses Associated with Viral Immunity and Inflammation in Dendritic Cells. Foods (Basel, Switzerland) 13 (15) (2024)
Anna K Hartikainen, Jonna Jalanka, Perttu Lahtinen, Alise J Ponsero, Tuomas Mertsalmi, Laura Finnegan, Fiona Crispie, Paul D Cotter, Perttu Arkkila, Satokari Reetta
Fecal microbiota transplantation influences microbiota without connection to symptom relief in irritable bowel syndrome patients. NPJ biofilms and microbiomes 10 (1) (2024)
Lisa Friess, Francesca Bottacini, Fionnuala M Mcauliffe, Ian J O'Neill, Paul D Cotter, Ciaran M Lee, Jose Munoz-Munoz, Douwe van Sinderen
Two extracellular α-arabinofuranosidases are required for cereal-derived arabinoxylan metabolism by Bifidobacterium longum subsp. longum . Gut microbes 16 (1) (2024)
Dearbhla Finnegan, Monica A Mechoud, Jamie A FitzGerald, Tom Beresford, Harsh Mathur, Paul D Cotter, Christine Loscher
Novel Fermentates Can Enhance Key Immune Responses Associated with Viral Immunity. Nutrients 16 (8) (2024)
Rocio Sanchez-Gallardo, Paula M O'Connor, Ian J O'Neill, Brian McDonnell, Ciaran M Lee, Rebecca L Moore, Fionnuala M Mcauliffe, Paul D Cotter, Douwe van Sinderen
Pseudocin 196, a novel lantibiotic produced by Bifidobacterium pseudocatenulatum elicits antimicrobial activity against clinically relevant pathogens. Gut microbes 16 (1) (2024)
Min Yap, Orla O'Sullivan, Paul W O'Toole, Jeremiah J Sheehan, Mark A Fenelon, Paul D Cotter
Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. mSystems 9 (4) (2024)
Nathaniel L Ritz, Lorraine A Draper, Thomaz F S Bastiaanssen, Christopher J R Turkington, Veronica L Peterson, Marcel van de Wouw, Klara Vlckova, Christine Fülling, Katherine E Guzzetta, Aurelijus Burokas, Hugh Harris, Marion Dalmasso, Fiona Crispie, Paul D Cotter, Andrey N Shkoporov, Gerard M Moloney, Timothy G Dinan, Colin Hill, John F Cryan
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice. Nature microbiology (2024)
Cathy Lordan, Aoife K Roche, Dianne Delsing, Arjen Nauta, Andre Groeneveld, John MacSharry, Paul D Cotter, Douwe Van Sinderen
Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond. Microbiology and molecular biology reviews : MMBR 88 (1) (2024)
Rocio Sanchez-Gallardo, Paula M O'Connor, Ian J O'Neill, Brian McDonnell, Ciaran M Lee, Rebecca L Moore, Fionnuala M Mcauliffe, Paul D Cotter, Douwe van Sinderen
Pseudocin 196, a novel lantibiotic produced by Bifidobacterium pseudocatenulatum elicits antimicrobial activity against clinically relevant pathogens. Gut microbes 16 (1) (2024)
Ajay Iyer, Arghya Mukherjee, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
The impact of live dietary microbes on health: A scoping review. Journal of food science 89 (2) (2024)
Cathy Lordan, Aoife K Roche, Dianne Delsing, Arjen Nauta, Andre Groeneveld, John MacSharry, Paul D Cotter, Douwe Van Sinderen
Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond. Microbiology and molecular biology reviews : MMBR 88 (1) (2024)
Gillian McDermott, Aaron Walsh, Fiona Crispie, Susanna Frost, Peter Greally, Paul D Cotter, Orla O'Sullivan, Julie Renwick
Insights into the Adolescent Cystic Fibrosis Airway Microbiome Using Shotgun Metagenomics. International journal of molecular sciences 25 (7) (2024)
Min Yap, Orla O'Sullivan, Paul W O'Toole, Jeremiah J Sheehan, Mark A Fenelon, Paul D Cotter
Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. mSystems (2024)
Cathy Lordan, Aoife K Roche, Dianne Delsing, Arjen Nauta, Andre Groeneveld, John MacSharry, Paul D Cotter, Douwe Van Sinderen
Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond. Microbiology and molecular biology reviews : MMBR 88 (1) (2024)
Cathy Lordan, Aoife K Roche, Dianne Delsing, Arjen Nauta, Andre Groeneveld, John MacSharry, Paul D Cotter, Douwe Van Sinderen
Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond. Microbiology and molecular biology reviews : MMBR (2024)
Nathaniel L Ritz, Lorraine A Draper, Thomaz F S Bastiaanssen, Christopher J R Turkington, Veronica L Peterson, Marcel van de Wouw, Klara Vlckova, Christine Fülling, Katherine E Guzzetta, Aurelijus Burokas, Hugh Harris, Marion Dalmasso, Fiona Crispie, Paul D Cotter, Andrey N Shkoporov, Gerard M Moloney, Timothy G Dinan, Colin Hill, John F Cryan
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice. Nature microbiology 9 (2) (2024)
Nathaniel L Ritz, Lorraine A Draper, Thomaz F S Bastiaanssen, Christopher J R Turkington, Veronica L Peterson, Marcel van de Wouw, Klara Vlckova, Christine Fülling, Katherine E Guzzetta, Aurelijus Burokas, Hugh Harris, Marion Dalmasso, Fiona Crispie, Paul D Cotter, Andrey N Shkoporov, Gerard M Moloney, Timothy G Dinan, Colin Hill, John F Cryan
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice. Nature microbiology 9 (2) (2024)
Ajay Iyer, Arghya Mukherjee, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
The impact of live dietary microbes on health: A scoping review. Journal of food science 89 (2) (2024)
Ajay Iyer, Arghya Mukherjee, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
The impact of live dietary microbes on health: A scoping review. Journal of food science 89 (2) (2024)
Liam H Walsh, Samuel Breselge, José Guilherme Prado Martin, Mairéad Coakley, Eimear Ferguson, Aimee Stapleton, Fiona Crispie, Paul W O' Toole, Paul D Cotter
Kefir4All, a citizen science initiative to raise awareness of the roles that microbes play in food fermentation. Journal of microbiology & biology education 25 (1) (2024)
Lisa Friess, Francesca Bottacini, Fionnuala M Mcauliffe, Ian J O'Neill, Paul D Cotter, Ciaran M Lee, Jose Munoz-Munoz, Douwe van Sinderen
Two extracellular α-arabinofuranosidases are required for cereal-derived arabinoxylan metabolism by Bifidobacterium longum subsp. longum . Gut microbes 16 (1) (2024)
Gillian McDermott, Aaron Walsh, Fiona Crispie, Susanna Frost, Peter Greally, Paul D Cotter, Orla O'Sullivan, Julie Renwick
Insights into the Adolescent Cystic Fibrosis Airway Microbiome Using Shotgun Metagenomics. International journal of molecular sciences 25 (7) (2024)
Liam H Walsh, Cian O' Mahony, Paul D Cotter
The changing landscape with respect to scientific research and education for second-level students and how they can overlap: the Kefir4All example. Journal of microbiology & biology education 25 (2) (2024)
Min Yap, Orla O'Sullivan, Paul W O'Toole, Jeremiah J Sheehan, Mark A Fenelon, Paul D Cotter
Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. mSystems 9 (4) (2024)
Lisa Friess, Francesca Bottacini, Fionnuala M Mcauliffe, Ian J O'Neill, Paul D Cotter, Ciaran M Lee, Jose Munoz-Munoz, Douwe van Sinderen
Two extracellular α-arabinofuranosidases are required for cereal-derived arabinoxylan metabolism by Bifidobacterium longum subsp. longum . Gut microbes 16 (1) (2024)
Ajay Iyer, Arghya Mukherjee, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
The impact of live dietary microbes on health: A scoping review. Journal of food science 89 (2) (2024)
Ajay Iyer, Arghya Mukherjee, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
The impact of live dietary microbes on health: A scoping review. Journal of food science (2024)
Liam H Walsh, Cian O' Mahony, Paul D Cotter
The changing landscape with respect to scientific research and education for second-level students and how they can overlap: the Kefir4All example. Journal of microbiology & biology education 25 (2) (2024)
Min Yap, Orla O'Sullivan, Paul W O'Toole, Jeremiah J Sheehan, Mark A Fenelon, Paul D Cotter
Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. mSystems 9 (4) (2024)
Francesca De Filippis, Vincenzo Valentino, Min Yap, Raul Cabrera-Rubio, Coral Barcenilla, Niccolò Carlino, José F Cobo-Díaz, Narciso Martín Quijada, Inés Calvete-Torre, Patricia Ruas-Madiedo, Carlos Sabater, Giuseppina Sequino, Edoardo Pasolli, Martin Wagner, Abelardo Margolles, Nicola Segata, Avelino Alvarez-Ordóñez, Paul D Cotter, Danilo Ercolini
Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities. NPJ biofilms and microbiomes 10 (1) (2024)
Cathy Lordan, Aoife K Roche, Dianne Delsing, Arjen Nauta, Andre Groeneveld, John MacSharry, Paul D Cotter, Douwe Van Sinderen
Linking human milk oligosaccharide metabolism and early life gut microbiota: bifidobacteria and beyond. Microbiology and molecular biology reviews : MMBR (2024)
Rocio Sanchez-Gallardo, Paula M O'Connor, Ian J O'Neill, Brian McDonnell, Ciaran M Lee, Rebecca L Moore, Fionnuala M Mcauliffe, Paul D Cotter, Douwe van Sinderen
Pseudocin 196, a novel lantibiotic produced by Bifidobacterium pseudocatenulatum elicits antimicrobial activity against clinically relevant pathogens. Gut microbes 16 (1) (2024)
Liam H Walsh, Cian O' Mahony, Paul D Cotter
The changing landscape with respect to scientific research and education for second-level students and how they can overlap: the Kefir4All example. Journal of microbiology & biology education 25 (2) (2024)
Anna K Hartikainen, Jonna Jalanka, Perttu Lahtinen, Alise J Ponsero, Tuomas Mertsalmi, Laura Finnegan, Fiona Crispie, Paul D Cotter, Perttu Arkkila, Satokari Reetta
Fecal microbiota transplantation influences microbiota without connection to symptom relief in irritable bowel syndrome patients. NPJ biofilms and microbiomes 10 (1) (2024)
Nathaniel L Ritz, Lorraine A Draper, Thomaz F S Bastiaanssen, Christopher J R Turkington, Veronica L Peterson, Marcel van de Wouw, Klara Vlckova, Christine Fülling, Katherine E Guzzetta, Aurelijus Burokas, Hugh Harris, Marion Dalmasso, Fiona Crispie, Paul D Cotter, Andrey N Shkoporov, Gerard M Moloney, Timothy G Dinan, Colin Hill, John F Cryan
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice. Nature microbiology 9 (2) (2024)
Angela Sessitsch, Steve Wakelin, Michael Schloter, Emmanuelle Maguin, Tomislav Cernava, Marie-Christine Champomier-Verges, Trevor C Charles, Paul D Cotter, Ilario Ferrocino, Aicha Kriaa, Pedro Lebre, Don Cowan, Lene Lange, Seghal Kiran, Lidia Markiewicz, Annelein Meisner, Marta Olivares, Inga Sarand, Bettina Schelkle, Joseph Selvin, Hauke Smidt, Leo van Overbeek, Gabriele Berg, Luca Simone Cocolin, Yolanda Sanz, Wilson Lemos Fernandes, Shuang-Jiang Liu, Matthew Ryan, Brajesh Singh, Tanja Kostic
Microbiome Interconnectedness throughout Environments with Major Consequences for Healthy People and a Healthy Planet. Microbiology and molecular biology reviews : MMBR (2023)
Chloe Matthews, Aaron M Walsh, Stephen Vincent Gordon, Bryan K Markey, Paul D Cotter, Jim O' Mahony
Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with Mycobacterium avium subsp. paratuberculosis (MAP). Animals : an open access journal from MDPI 13 (10) (2023)
Arghya Mukherjee, Ajay Iyer, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
Mapping the available evidence on the impact of ingested live microbes on health: a scoping review protocol. BMJ open 13 (5) (2023)
Caitlin O'Mahony, Adam Clooney, Siobhan F Clarke, Mònica Aguilera, Aisling Gavin, Donjete Simnica, Mary Ahern, Aine Fanning, Maurice Stanley, Raul Cabrera Rubio, Elaine Patterson, Tatiana Marques, Rebecca Wall, Aileen Houston, Amr Mahmoud, Michael W Bennett, Catherine Stanton, Marcus Joakim Claesson, Paul D Cotter, Fergus Shanahan, Susan A Joyce, Silvia Melgar
Dietary-Induced Bacterial Metabolites Reduce Inflammation and Inflammation-Associated Cancer via Vitamin D Pathway. International journal of molecular sciences 24 (3) (2023)
Caitlin O'Mahony, Adam Clooney, Siobhan F Clarke, Mònica Aguilera, Aisling Gavin, Donjete Simnica, Mary Ahern, Aine Fanning, Maurice Stanley, Raul Cabrera Rubio, Elaine Patterson, Tatiana Marques, Rebecca Wall, Aileen Houston, Amr Mahmoud, Michael W Bennett, Catherine Stanton, Marcus Joakim Claesson, Paul D Cotter, Fergus Shanahan, Susan A Joyce, Silvia Melgar
Dietary-Induced Bacterial Metabolites Reduce Inflammation and Inflammation-Associated Cancer via Vitamin D Pathway. International journal of molecular sciences 24 (3) (2023)
Conor Feehily, Ian J O'Neill, Calum J Walsh, Rebecca L Moore, Sarah Louise Killeen, Aisling A Geraghty, Elaine M Lawton, David Byrne, Rocio Sanchez-Gallardo, Sai Ravi Chandra Nori, Ida Busch Nielsen, Esther Wortmann, Elizabeth Matthews, Roisin O'Flaherty, Pauline M Rudd, David Groeger, Fergus Shanahan, Radka Saldova, Fionnuala M McAuliffe, Douwe Van Sinderen, Paul D Cotter
Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach. Nature communications 14 (1) (2023)
Amy H Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Paul D Cotter, Sinéad Keaveney
Amplicon-Based High-Throughput Sequencing Method for Genotypic Characterization of Norovirus in Oysters. Applied and environmental microbiology (2023)
Liam H Walsh, Aaron M Walsh, Isabel Garcia-Perez, Fiona Crispie, Adele Costabile, Richard Ellis, Jim Finlayson, Laura A Finnegan, Marcus J Claesson, Elaine Holmes, Paul D Cotter
Comparison of the relative impacts of acute consumption of an inulin-enriched diet, milk kefir or a commercial probiotic product on the human gut microbiome and metabolome. NPJ science of food 7 (1) (2023)
Caitlin O'Mahony, Adam Clooney, Siobhan F Clarke, Mònica Aguilera, Aisling Gavin, Donjete Simnica, Mary Ahern, Aine Fanning, Maurice Stanley, Raul Cabrera Rubio, Elaine Patterson, Tatiana Marques, Rebecca Wall, Aileen Houston, Amr Mahmoud, Michael W Bennett, Catherine Stanton, Marcus Joakim Claesson, Paul D Cotter, Fergus Shanahan, Susan A Joyce, Silvia Melgar
Dietary-Induced Bacterial Metabolites Reduce Inflammation and Inflammation-Associated Cancer via Vitamin D Pathway. International journal of molecular sciences 24 (3) (2023)
Arghya Mukherjee, Ajay Iyer, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
Mapping the available evidence on the impact of ingested live microbes on health: a scoping review protocol. BMJ open 13 (5) (2023)
Arghya Mukherjee, Ajay Iyer, Beatriz Gómez-Sala, Eibhlís M O'Connor, John G Kenny, Paul D Cotter
Mapping the available evidence on the impact of ingested live microbes on health: a scoping review protocol. BMJ open 13 (5) (2023)
Arghya Mukherjee, Samuel Breselge, Eirini Dimidi, Maria L Marco, Paul D Cotter
Fermented foods and gastrointestinal health: underlying mechanisms. Nature reviews. Gastroenterology & hepatology (2023)
Jacinta Gahan, Orla O'Sullivan, Paul D Cotter, Achim Schmalenberger
Arbuscular Mycorrhiza Support Plant Sulfur Supply through Organosulfur Mobilizing Bacteria in the Hypho- and Rhizosphere. Plants (Basel, Switzerland) 11 (22) (2022)
Juan M Ortiz Sanjuán, Edgar G Manzanilla, Raúl Cabrera-Rubio, Fiona Crispie, Paul D Cotter, Juan J Garrido, Héctor Argüello
Using Shotgun Sequencing to Describe the Changes Induced by In-Feed Zinc Oxide and Apramycin in the Microbiomes of Pigs One Week Postweaning. Microbiology spectrum 10 (4) (2022)
Amy H Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Sinéad Keaveney, Paul D Cotter
Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of Norovirus. Applied and environmental microbiology 89 (1) (2022)
Amy H Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Sinéad Keaveney, Paul D Cotter
Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of Norovirus. Applied and environmental microbiology (2022)
Amy H Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Sinéad Keaveney, Paul D Cotter
Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of Norovirus. Applied and environmental microbiology 89 (1) (2022)
Wellison Amorim Pereira, Carlos Miguel N Mendonça, Alejandro Villasante Urquiza, Viggo Thor Marteinsson, Jean Guy LeBlanc, Paul D Cotter, Elías Figueroa Villalobos, Jaime Romero, Ricardo Pinheiro de Souza Oliveira
Use of Probiotic Bacteria and Bacteriocins as an Alternative to Antibiotics in Aquaculture. Microorganisms 10 (9) (2022)
Claudia Marcela Arenas-Gómez, Enriqueta Garcia-Gutierrez, Juan S Escobar, Paul D Cotter
Human gut homeostasis and regeneration: the role of the gut microbiota and its metabolites. Critical reviews in microbiology (2022)
Meghana Srinivas, Orla O'Sullivan, Paul D Cotter, Douwe van Sinderen, John G Kenny
The Application of Metagenomics to Study Microbial Communities and Develop Desirable Traits in Fermented Foods. Foods (Basel, Switzerland) 11 (20) (2022)
Namrata Iyer, Michelle A Williams, Amy A O'Callaghan, Elaine Dempsey, Raul Cabrera-Rubio, Mathilde Raverdeau, Fiona Crispie, Paul D Cotter, Sinéad C Corr
Lactobacillus salivarius UCC118™ Dampens Inflammation and Promotes Microbiota Recovery to Provide Therapeutic Benefit in a DSS-Induced Colitis Model. Microorganisms 10 (7) (2022)
Taís M Kuniyoshi, Paula M O'Connor, Elaine Lawton, Dinesh Thapa, Beatriz Mesa-Pereira, Sara Abulu, Colin Hill, Reynolds Paul Ross, Ricardo P S Oliveira, Paul D Cotter
An oxidation resistant pediocin PA-1 derivative and penocin A display effective anti- Listeria activity in a model human gut environment. Gut microbes 14 (1) (2022)
Sarah Louise Killeen, David F Byrne, Aisling A Geraghty, Cara A Yelverton, Douwe van Sinderen, Paul D Cotter, Eileen F Murphy, Sharleen L O'Reilly, Fionnuala M Mcauliffe
Recruiting and Engaging Women of Reproductive Age with Obesity: Insights from A Mixed-Methods Study within A Trial. International journal of environmental research and public health 19 (21) (2022)
Liam H Walsh, Mairéad Coakley, Aaron M Walsh, Paul W O' Toole, Paul D Cotter
Bioinformatic approaches for studying the microbiome of fermented food. Critical reviews in microbiology (2022)
Amy H Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Sinéad Keaveney, Paul D Cotter
Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of Norovirus. Applied and environmental microbiology 89 (1) (2022)
Silvia Diviccaro, Jamie A FitzGerald, Lucia Cioffi, Eva Falvo, Fiona Crispie, Paul D Cotter, Siobhain M O'Mahony, Silvia Giatti, Donatella Caruso, Roberto Cosimo Melcangi
Gut Steroids and Microbiota: Effect of Gonadectomy and Sex. Biomolecules 12 (6) (2022)
Amy H Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Sinéad Keaveney, Paul D Cotter
Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of Norovirus. Applied and environmental microbiology 89 (1) (2022)
Yemisi Dorcas Obafemi, Solomon U Oranusi, Kolawole O Ajanaku, Akinniyi Paul Akinduti, John Leech, Paul D Cotter
African fermented foods: overview, emerging benefits, and novel approaches to microbiome profiling. NPJ science of food 6 (1) (2022)
Marcus T O'Brien, Orla O'Sullivan, Marcus Joakim Claesson, Paul D Cotter
The Athlete Gut Microbiome and its Relevance to Health and Performance: A Review. Sports medicine (Auckland, N.Z.) (2022)
Sreeram Udayan, Panagiota Stamou, Fiona Crispie, Ana Hickey, Alexandria N Floyd, Chyi-Song Hsieh, Paul D Cotter, Orla O'Sullivan, Silvia Melgar, Paul W O' Toole, Rodney D Newberry, Valerio Rossini, Ken Nally
Identification of Gut Bacteria such as Lactobacillus johnsonii that Disseminate to Systemic Tissues of Wild Type and MyD88-/- Mice. Gut microbes 14 (1) (2022)
Marcus Boehme, Katherine E Guzzetta, Thomaz F S Bastiaanssen, Marcel van de Wouw, Gerard M Moloney, Andreu Gual-Grau, Simon Spichak, Loreto Olavarría-Ramírez, Patrick Fitzgerald, Enrique Morillas, Nathaniel L Ritz, Minal Jaggar, Caitlin S M Cowan, Fiona Crispie, Francisco Donoso, Evelyn Halitzki, Marta C Neto, Marzia Sichetti, Anna V Golubeva, Rachel S Fitzgerald, Marcus Joakim Claesson, Paul D Cotter, Olivia F O'Leary, Timothy G Dinan, John F Cryan
Microbiota from young mice counteracts selective age-associated behavioral deficits. Nature aging 1 (8) (2021)
Marcus Boehme, Katherine E Guzzetta, Thomaz F S Bastiaanssen, Marcel van de Wouw, Gerard M Moloney, Andreu Gual-Grau, Simon Spichak, Loreto Olavarría-Ramírez, Patrick Fitzgerald, Enrique Morillas, Nathaniel L Ritz, Minal Jaggar, Caitlin S M Cowan, Fiona Crispie, Francisco Donoso, Evelyn Halitzki, Marta C Neto, Marzia Sichetti, Anna V Golubeva, Rachel S Fitzgerald, Marcus Joakim Claesson, Paul D Cotter, Olivia F O'Leary, Timothy G Dinan, John F Cryan
Microbiota from young mice counteracts selective age-associated behavioral deficits. Nature aging 1 (8) (2021)
Enriqueta Garcia-Gutierrez, Paul D Cotter
Relevance of organ(s)-on-a-chip systems to the investigation of food-gut microbiota-host interactions. Critical reviews in microbiology (2021)
Fergus W J Collins, Calum J Walsh, Beatriz Gomez-Sala, Elena Guijarro-García, David Stokes, Klara B Jakobsdóttir, Kristján Kristjánsson, Finlay Burns, Paul D Cotter, Mary C Rea, Colin Hill, Reynolds Paul Ross
The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes. Gut microbes 13 (1) (2021)
Chloe Matthews, Paul D Cotter, Jim O' Mahony
MAP, Johne's disease and the microbiome; current knowledge and future considerations. Animal microbiome 3 (1) (2021)
Arghya Mukherjee, Cathy Lordan, Reynolds Paul Ross, Paul D Cotter
Gut microbes from the phylogenetically diverse genus Eubacterium and their various contributions to gut health. Gut microbes 12 (1) (2021)
Min Yap, David Gleeson, Paul W O'Toole, Orla O'Sullivan, Paul D Cotter
Seasonality and Geography Have a Greater Influence than the Use of Chlorine-Based Cleaning Agents on the Microbiota of Bulk Tank Raw Milk. Applied and environmental microbiology 87 (22) (2021)
Aoife J McHugh, Min Yap, Fiona Crispie, Conor Feehily, Colin Hill, Paul D Cotter
Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples. NPJ science of food 5 (1) (2021)
Maria L Marco, Mary Ellen Sanders, Michael G Gaenzle, Marie Claire Arrieta, Paul D Cotter, Luc De Vuyst, Colin Hill, Wilhelm Holzapfel, Sarah Lebeer, Dan Merenstein, Gregor Reid, Benjamin E Wolfe, Robert Hutkins
The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods. Nature reviews. Gastroenterology & hepatology 18 (3) (2021)
Edoardo Pasolli, Francesca De Filippis, Italia E Mauriello, Fabio Cumbo, Aaron M Walsh, John Leech, Paul D Cotter, Nicola Segata, Danilo Ercolini
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nature communications 11 (1) (2020)
Conor Feehily, David Crosby, Calum J Walsh, Elaine M Lawton, Shane Higgins, Fionnuala M McAuliffe, Paul D Cotter
Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth. NPJ biofilms and microbiomes 6 (1) (2020)
Aaron M Walsh, Guerrino Macori, Kieran N Kilcawley, Paul D Cotter
Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality. Nature food 1 (8) (2020)
Nicholas Charles Penney, W Barton, Joram Matthias Posma, A Darzi, Gary S Frost, Paul D Cotter, Elaine Holmes, F Shanahan, O O'Sullivan, Isabel Garcia-Perez
Investigating the Role of Diet and Exercise in Gut Microbe-Host Cometabolism. mSystems 5 (6) (2020)
John Leech, Raul Cabrera-Rubio, Aaron M Walsh, Guerrino Macori, Calum J Walsh, Wiley Barton, Laura Finnegan, Fiona Crispie, Orla O'Sullivan, Marcus J Claesson, Paul D Cotter
Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. mSystems 5 (6) (2020)
Enriqueta Garcia-Gutierrez, Paula M O'Connor, Ian J Colquhoun, Natalia M Vior, Juan Miguel Rodríguez, Melinda J Mayer, Paul D Cotter, Arjan Narbad
Production of multiple bacteriocins, including the novel bacteriocin gassericin M, by Lactobacillus gasseri LM19, a strain isolated from human milk. Applied microbiology and biotechnology 104 (9) (2020)
Cathy Lordan, Dinesh Thapa, R Paul Ross, Paul D Cotter
Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components. Gut microbes 11 (1) (2019)
Raul Cabrera-Rubio, Angela M Patterson, Paul D Cotter, Naiara Beraza
Cholestasis induced by bile duct ligation promotes changes in the intestinal microbiome in mice. Scientific reports 9 (1) (2019)
Mahdi Ghanbari, Viviana Klose, Fiona Crispie, Paul D Cotter
The dynamics of the antibiotic resistome in the feces of freshly weaned pigs following therapeutic administration of oxytetracycline. Scientific reports 9 (1) (2019)
Paula M O' Connor, Eileen F O' Shea, Paul D Cotter, Colin Hill, R Paul Ross
The potency of the broad spectrum bacteriocin, bactofencin A, against staphylococci is highly dependent on primary structure, N-terminal charge and disulphide formation. Scientific reports 8 (1) (2018)
Héctor Argüello, Jordi Estellé, Sara Zaldívar-López, Ángeles Jiménez-Marín, Ana Carvajal, Mª Asunción López-Bascón, Fiona Crispie, Orla O'Sullivan, Paul D Cotter, Feliciano Priego-Capote, Luis Morera, Juan J Garrido
Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa. Scientific reports 8 (1) (2018)
Beatriz Mesa-Pereira, Paula M O'Connor, Mary C Rea, Paul D Cotter, Colin Hill, R Paul Ross
Controlled functional expression of the bacteriocins pediocin PA-1 and bactofencin A in Escherichia coli. Scientific reports 7 (1) (2017)

Paul D Cotter.css-eqlu8i{font-size:small;padding-left:4px;} (P D Cotter)

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Paul D Cotter (P D Cotter)