Zhe Ji

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 21

Top Venues

Genome research

Nature communications

Briefings in bioinformatics

Nature biotechnology

Northwestern University Feinberg School of Medicine

Rutgers New Jersey Medical School (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Northwestern University Feinberg School of Medicine Jan 01 2018

United States

Assistant Professor :: Pharmacology

Northwestern University Jan 01 2018

United States

Assistant Professor :: Biomedical Engineering

Education History

Rutgers New Jersey Medical School Aug 21 2006 - Oct 15 2012

United States

PHD :: Cell Biology and Molecular Medicine

Nanjing University Sep 01 2002 - Jun 30 2006

China

BSC :: Biotechnology

Publications

Emily Stroup, Zhe Ji
Delineating yeast cleavage and polyadenylation signals using deep learning. Genome research (2024)
Haiwang Yang, Qianru Li, Emily K Stroup, Sheng Wang, Zhe Ji
Widespread stable noncanonical peptides identified by integrated analyses of ribosome profiling and ORF features. Nature communications 15 (1) (2024)
Emily Stroup, Zhe Ji
Delineating yeast cleavage and polyadenylation signals using deep learning. Genome research (2024)
Sheng Wang, Emily K Stroup, Ting-You Wang, Rendong Yang, Zhe Ji
Comparative analyses of gene networks mediating cancer metastatic potentials across lineage types. Briefings in bioinformatics 25 (4) (2024)
Emily Kunce Stroup, Zhe Ji
Delineating yeast cleavage and polyadenylation signals using deep learning. Genome research 34 (7) (2024)
Emily Kunce Stroup, Zhe Ji
Delineating yeast cleavage and polyadenylation signals using deep learning. Genome research 34 (7) (2024)
Emily Kunce Stroup, Zhe Ji
Delineating yeast cleavage and polyadenylation signals using deep learning. Genome research (2024)
Haiwang Yang, Qianru Li, Emily K Stroup, Sheng Wang, Zhe Ji
Widespread stable noncanonical peptides identified by integrated analyses of ribosome profiling and ORF features. Nature communications 15 (1) (2024)
Emily Stroup, Zhe Ji
Delineating yeast cleavage and polyadenylation signals using deep learning. Genome research (2024)
Sheng Wang, Emily K Stroup, Ting-You Wang, Rendong Yang, Zhe Ji
Comparative analyses of gene networks mediating cancer metastatic potentials across lineage types. Briefings in bioinformatics 25 (4) (2024)
Haiwang Yang, Qianru Li, Emily K Stroup, Sheng Wang, Zhe Ji
Widespread stable noncanonical peptides identified by integrated analyses of ribosome profiling and ORF features. Nature communications 15 (1) (2024)
Sheng Wang, Emily K Stroup, Ting-You Wang, Rendong Yang, Zhe Ji
Comparative analyses of gene networks mediating cancer metastatic potentials across lineage types. Briefings in bioinformatics 25 (4) (2024)
Haiwang Yang, Qianru Li, Emily K Stroup, Sheng Wang, Zhe Ji
Widespread stable noncanonical peptides identified by integrated analyses of ribosome profiling and ORF features. Nature communications 15 (1) (2024)
Emily Kunce Stroup, Zhe Ji
Deep learning of human polyadenylation sites at nucleotide resolution reveals molecular determinants of site usage and relevance in disease. Nature communications 14 (1) (2023)
Emily Kunce Stroup, Zhe Ji
Delineating yeast cleavage and polyadenylation signals using deep learning. bioRxiv : the preprint server for biology (2023)
Tamara Ouspenskaia, Travis Law, Karl R Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet, Bo Li, Elena Christian, Binyamin Asher Knisbacher, Phuong M Le, Christina R Hartigan, Hasmik Keshishian, Annie Apffel, Giacomo Oliveira, Wandi Zhang, Sarah Chen, Yuen Ting Chow, Zhe Ji, Irwin Jungreis, Sachet A Shukla, Sune Justesen, Pavan Bachireddy, Manolis Kellis, Gad A Getz, Nir Hacohen, Derin B Keskin, Steven A Carr, Catherine J Wu, Aviv Regev
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer. Nature biotechnology (2021)
Yang Yi, Yanqiang Li, Qingshu Meng, Qiaqia Li, Fuxi Li, Bing Lu, Jiangchuan Shen, Ladan Fazli, Dongyu Zhao, Chao Li, Weihua Jiang, Rui Wang, Qipeng Liu, Aileen Szczepanski, Qianru Li, Wei Qin, Adam B Weiner, Tamara L Lotan, Zhe Ji, Sundeep Kalantry, Lu Wang, Edward M Schaeffer, Hengyao Niu, Xuesen Dong, Wei Zhao, Kaifu Chen, Qi Cao
A PRC2-independent function for EZH2 in regulating rRNA 2'-O methylation and IRES-dependent translation. Nature cell biology 23 (4) (2021)
Payal Dhar, Fahmin Basher, Zhe Ji, Lei Huang, Si Qin, Derek A Wainwright, Jerid Robinson, Shaye Hagler, Jing Zhou, Sean MacKay, Jennifer D Wu
Tumor-derived NKG2D ligand sMIC reprograms NK cells to an inflammatory phenotype through CBM signalosome activation. Communications biology 4 (1) (2021)
John R Prensner, Oana M Enache, Victor Luria, Karsten Krug, Karl R Clauser, Joshua M Dempster, Amir Karger, Li Wang, Karolina Stumbraite, Vickie M Wang, Ginevra Botta, Nicholas J Lyons, Amy Goodale, Zohra Kalani, Briana Fritchman, Adam Brown, Douglas Alan, Thomas Green, Xiaoping Yang, Jacob D Jaffe, Jennifer A Roth, Federica Piccioni, Marc W Kirschner, Zhe Ji, David E Root, Todd R Golub
Noncanonical open reading frames encode functional proteins essential for cancer cell survival. Nature biotechnology 39 (6) (2021)
Xian Adiconis, Adam L Haber, Sean K Simmons, Ami Levy Moonshine, Zhe Ji, Michele A Busby, Xi Shi, Justin Jacques, Madeline A Lancaster, Jen Q Pan, Aviv Regev, Joshua Z Levin
Comprehensive comparative analysis of 5'-end RNA-sequencing methods. Nature methods 15 (7) (2018)
Zhe Ji, Lizhi He, Asaf Rotem, Andreas Janzer, Christine S Cheng, Aviv Regev, Kevin Struhl
Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation. Nature communications 9 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Zhe Ji