Catherine A Lozupone (Catherine Lozupone)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 14

Top Topics

Clostridium Difficile

Men Who Have Sex With Men

Top Venues

bioRxiv : the preprint server for biology

NPJ biofilms and microbiomes

This page only lists publications with an associated author ORCID identifier.

Publications

Jennifer Fouquier, Maggie A Stanislawski, John B O'Connor, Ashley W Scadden, Catherine A Lozupone
EXPLANA: A user-friendly workflow for EXPLoratory ANAlysis and feature selection in cross-sectional and longitudinal microbiome studies. bioRxiv : the preprint server for biology (2024)
Jennifer Fouquier, Maggie A Stanislawski, John B O'Connor, Ashley W Scadden, Catherine A Lozupone
EXPLANA: A user-friendly workflow for EXPLoratory ANAlysis and feature selection in cross-sectional and longitudinal microbiome studies. bioRxiv : the preprint server for biology (2024)
Brook Santangelo, Lawrence E Hunter, Catherine A Lozupone
Characterization of methods for mechanistic inference of the gut microbiome in disease. bioRxiv : the preprint server for biology (2023)
Brook Santangelo, Michael Bada, Lawrence E Hunter, Catherine A Lozupone
Hypothesizing mechanistic links between microbes and disease using knowledge graphs. bioRxiv : the preprint server for biology (2023)
Valdirene Leao Carneiro, Katherine M Littlefield, Renee Watson, Brent E Palmer, Catherine A Lozupone
Inflammation-associated gut microbiome in postacute sequelae of SARS-CoV-2 points towards new therapeutic targets. Gut (2023)
Valdirene Leao Carneiro, Katherine M Littlefield, Renee Watson, Brent E Palmer, Catherine A Lozupone
Inflammation-associated gut microbiome in postacute sequelae of SARS-CoV-2 points towards new therapeutic targets. Gut (2023)
Keith Z Hazleton, Casey G Martin, David J Orlicky, Kathleen L Arnolds, Nichole M Nusbacher, Nancy Moreno-Huizar, Michael Armstrong, Nichole Reisdorph, Catherine A Lozupone
Dietary fat promotes antibiotic-induced Clostridioides difficile mortality in mice. NPJ biofilms and microbiomes 8 (1) (2022)
Abigail J S Armstrong, Kevin Quinn, Jennifer Fouquier, Sam X Li, Jennifer M Schneider, Nichole M Nusbacher, Katrina A Doenges, Suzanne Fiorillo, Tyson J Marden, Janine Higgins, Nichole Reisdorph, Thomas B Campbell, Brent E Palmer, Catherine A Lozupone
Systems Analysis of Gut Microbiome Influence on Metabolic Disease in HIV-Positive and High-Risk Populations. mSystems 6 (3) (2021)
Jennifer Fouquier, Nancy Moreno Huizar, Jody Donnelly, Cody Glickman, Dae-Wook Kang, Juan Maldonado, Rachel A Jones, Kimberly Johnson, James B Adams, Rosa Krajmalnik-Brown, Catherine A Lozupone
The Gut Microbiome in Autism: Study-Site Effects and Longitudinal Analysis of Behavior Change. mSystems 6 (2) (2021)
John L Darcy, Alex D Washburne, Michael Scott Robeson, Tiffany Prest, Steven K Schmidt, Catherine A Lozupone
A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome. The ISME journal 14 (6) (2020)
Maggie A Stanislawski, Dana Dabelea, Leslie A Lange, Brandie D Wagner, Catherine A Lozupone
Gut microbiota phenotypes of obesity. NPJ biofilms and microbiomes 5 (1) (2019)
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric John Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodriguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan P Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo-Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine A Lozupone, Massoud Maher, Clarisse A Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima R Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R Rivers, Michael Scott Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin Johan Jozias van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature biotechnology 37 (8) (2019)
Sam X Li, Sharon Sen, Jennifer M Schneider, Ka-Na Xiong, Nichole M Nusbacher, Nancy Moreno-Huizar, Michael Shaffer, Abigail J S Armstrong, Erin Severs, Kristine A Kuhn, Charles P Neff, Martin D McCarter, Thomas Campbell, Catherine A Lozupone, Brent E Palmer
Gut microbiota from high-risk men who have sex with men drive immune activation in gnotobiotic mice and in vitro HIV infection. PLoS pathogens 15 (4) (2019)
Sophie Weiss, Will Van Treuren, Catherine A Lozupone, Karoline Faust, Jonathan Friedman, Ye Deng, Li Charlie Xia, Zhenjiang Zech Xu, Luke Ursell, Eric J Alm, Amanda Birmingham, Jacob A Cram, Jed A Fuhrman, Jeroen Raes, Fengzhu Sun, Jizhong Zhou, Rob Knight
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. The ISME journal 10 (7) (2016)