Paul M Thomas

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2022
Publications (10 Years): 28

Top Venues

Nature communications

Journal of proteome research

Analytical chemistry

Nature chemical biology

University of Illinois at Urbana-Champaign (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Illinois at Urbana-Champaign Sep 01 2004 - Jan 31 2009

United States

PHD :: Chemistry

George Mason University Sep 01 2002 - May 30 2004

United States

MSC :: Chemistry

George Mason University Sep 01 1999 - May 30 2003

United States

BSC :: Chemistry

Publications

Michael A R Hollas, Matthew T Robey, Ryan T Fellers, Richard D LeDuc, Paul M Thomas, Michael P Snyder
The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms. Nucleic acids research 50 (D1) (2022)
Rafael Donadélli Melani, Vincent R Gerbasi, Lissa C Anderson, Jacek W Sikora, Timothy K Toby, Josiah E Hutton, David S Butcher, Fernanda Negrão, Henrique S Seckler, Kristina Srzentić, Luca Fornelli, Jeannie M Camarillo, Richard D LeDuc, Anthony J Cesnik, Emma Lundberg, Joseph B Greer, Ryan T Fellers, Matthew T Robey, Caroline J DeHart, Eleonora Forte, Christopher L Hendrickson, Susan E Abbatiello, Paul M Thomas, Andy I Kokaji, Josh Levitsky, Michael P Snyder
The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells. Science (New York, N.Y.) 375 (6579) (2022)
Vincent R Gerbasi, Rafael Donadélli Melani, Susan E Abbatiello, Michael W Belford, Romain Huguet, John P McGee, Dawson Dayhoff, Paul M Thomas, Michael P Snyder
Deeper Protein Identification Using Field Asymmetric Ion Mobility Spectrometry in Top-Down Proteomics. Analytical chemistry 93 (16) (2021)
Rafael Donadélli Melani, Benjamin J Des Soye, Jared O Kafader, Eleonora Forte, Michael Hollas, Voislav Blagojevic, Fernanda Negrão, John P McGee, Bryon Drown, Cameron Lloyd-Jones, Henrique S Seckler, Jeannie M Camarillo, Philip D Compton, Richard D LeDuc, Bryan Early, Ryan T Fellers, Byoung-Kyu Cho, Basil Baby Mattamana, Young Ah Goo, Paul M Thomas, Michelle K Ash, Pavan P Bhimalli, Lena Al-Harthi, Beverly E Sha, Jeffrey R Schneider, Michael P Snyder
Next-generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire. medRxiv : the preprint server for health sciences (2021)
Yi Liu, Roderick G Davis, Paul M Thomas, Michael P Snyder, Michael C Jewett
In vitro-Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins. Biochemistry 60 (3) (2021)
Tatsiana Kosciuk, Ian R Price, Xiaoyu Zhang, Chengliang Zhu, Kayla N Johnson, Shuai Zhang, Steve L Halaby, Garrison P Komaniecki, Min Yang, Caroline J DeHart, Paul M Thomas, Michael P Snyder, J Christopher Fromme, Hening Lin
NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle. Nature communications 11 (1) (2020)
W Ian Deighan, Valerie J Winton, Rafael Donadélli Melani, Lissa C Anderson, John P McGee, Luis F Schachner, David Barnidge, David Murray, H Denis Alexander, David S Gibson, Michael J Deery, Feargal P McNicholl, Joseph McLaughlin, Neil L Kelleher, Paul M Thomas
Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing. Clinical chemistry and laboratory medicine 59 (4) (2020)
Lloyd M Smith, Paul M Thomas, Michael R Shortreed, Leah V Schaffer, Ryan T Fellers, Richard D LeDuc, Trisha Tucholski, Ying Ge, Jeffery N Agar, Lissa C Anderson, Julia Chamot-Rooke, Joseph Gault, Joseph A Loo, Ljiljana Pasa-Tolic, Carol V Robinson, Hartmut Schlüter, Yury O Tsybin, Juan Antonio Vizcaino, Juan Antonio Vizcaíno, Paul O Danis, Michael P Snyder
A five-level classification system for proteoform identifications. Nature methods 16 (10) (2020)
Nebiyu A Abshiru, Jacek W Sikora, Jeannie M Camarillo, Juliette A Morris, Philip D Compton, Tak Lee, Yaseswini Neelamraju, Samuel Haddox, Caroline K Sheridan, Martin Carroll, Larry D Cripe, Martin S Tallman, Elisabeth M Paietta, Ari M Melnick, Paul M Thomas, Francine E Garrett-Bakelman, Michael P Snyder
Targeted detection and quantitation of histone modifications from 1,000 cells. PloS one 15 (10) (2020)
Simon Lax, Cesar Cardona, Dan Zhao, Valerie J Winton, Gabriel Goodney, Peng Gao, Neil Gottel, Erica M Hartmann, Chris Henry, Paul M Thomas, Scott T Kelley, Brent Stephens, Jack A Gilbert
Microbial and metabolic succession on common building materials under high humidity conditions. Nature communications 10 (1) (2019)
Hae-Min Park, Rosalba Satta, Roderick G Davis, Young Ah Goo, Richard D LeDuc, Ryan T Fellers, Joseph B Greer, Elena V Romanova, Stanislav S Rubakhin, Rex Tai, Paul M Thomas, Jonathan V Sweedler, Michael P Snyder, Steven M Patrie, Amy W Lasek
Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol. Journal of proteome research 18 (11) (2019)
Soo Y Ro, Luis F Schachner, Christopher W Koo, Rahul Purohit, Jonathan P Remis, Grace E Kenney, Brandon W Liauw, Paul M Thomas, Steven M Patrie, Michael P Snyder, Amy C Rosenzweig
Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase. Nature communications 10 (1) (2019)
Bryan A Killinger, Zachary B Madaj, Jacek W Sikora, Nolwen L Rey, Alec J Haas, Yamini Vepa, Daniel Lindqvist, Honglei Chen, Paul M Thomas, Patrik Brundin, Lena Brundin, Viviane Labrie
The vermiform appendix impacts the risk of developing Parkinson's disease. Science translational medicine 10 (465) (2019)
Ruedi Aebersold, Jeffrey N Agar, I Jonathan Amster, Mark S Baker, Carolyn R Bertozzi, Emily S Boja, Catherine E Costello, Benjamin F Cravatt, Catherine Fenselau, Benjamin A Garcia, Ying Ge, Jeremy Gunawardena, Ronald C Hendrickson, Paul J Hergenrother, Christian G Huber, Alexander R Ivanov, Ole N Jensen, Michael C Jewett, Michael P Snyder, Laura L Kiessling, Nevan J Krogan, Martin R Larsen, Joseph A Loo, Rachel R Ogorzalek Loo, Emma Lundberg, Michael J MacCoss, Parag Mallick, Vamsi K Mootha, Milan Mrksich, Tom W Muir, Steven M Patrie, James J Pesavento, Sharon J Pitteri, Henry Rodriguez, Alan Saghatelian, Wendy Sandoval, Hartmut Schlüter, Salvatore Sechi, Sarah A Slavoff, Lloyd M Smith, Michael P Snyder, Paul M Thomas, Mathias Uhlén, Jennifer E Van Eyk, Marc Vidal, David R Walt, Forest M White, Evan R Williams, Therese Wohlschlager, Vicki H Wysocki, Nathan A Yates, Nicolas L Young, Bing Zhang
How many human proteoforms are there? Nature chemical biology 14 (3) (2019)
Grace E Kenney, Laura M K Dassama, Maria-Eirini Pandelia, Anthony S Gizzi, Ryan J Martinie, Peng Gao, Caroline J DeHart, Luis F Schachner, Owen S Skinner, Soo Y Ro, Xiao Zhu, Monica Sadek, Paul M Thomas, Steven C Almo, J Martin Bollinger, Carsten Krebs, Michael P Snyder, Amy C Rosenzweig
The biosynthesis of methanobactin. Science (New York, N.Y.) 359 (6382) (2018)
Kenneth D Clevenger, Rosa Ye, Jin Woo Bok, Paul M Thomas, Md Nurul Islam, Galen P Miley, Matthew T Robey, Cynthia Chen, KaHoua Yang, Michael Swyers, Edward Wu, Peng Gao, Chengcang C Wu, Nancy P Keller, Michael P Snyder
Interrogation of Benzomalvin Biosynthesis Using Fungal Artificial Chromosomes with Metabolomic Scoring (FAC-MS): Discovery of a Benzodiazepine Synthase Activity. Biochemistry 57 (23) (2018)
Matthew T Robey, Rosa Ye, Jin Woo Bok, Kenneth D Clevenger, Md Nurul Islam, Cynthia Chen, Raveena Gupta, Michael Swyers, Edward Wu, Peng Gao, Paul M Thomas, Chengcang C Wu, Nancy P Keller, Michael P Snyder
Identification of the First Diketomorpholine Biosynthetic Pathway Using FAC-MS Technology. ACS chemical biology 13 (5) (2018)
Rey W Martin, Benjamin J Des Soye, Yong-Chan Kwon, Jennifer Kay, Roderick G Davis, Paul M Thomas, Natalia I Majewska, Cindy X Chen, Ryan D Marcum, Mary Grace Weiss, Ashleigh E Stoddart, Miriam Amiram, Arnaz K Ranji Charna, Jaymin R Patel, Farren J Isaacs, Michael P Snyder, Seok Hoon Hong, Michael C Jewett
Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids. Nature communications 9 (1) (2018)
Oriana S Fisher, Grace E Kenney, Matthew O Ross, Soo Y Ro, Betelehem E Lemma, Sharon Batelu, Paul M Thomas, Victoria C Sosnowski, Caroline J DeHart, Michael P Snyder, Timothy L Stemmler, Brian M Hoffman, Amy C Rosenzweig
Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria. Nature communications 9 (1) (2018)
Nicholas M Riley, Jacek W Sikora, Henrique S Seckler, Joseph B Greer, Ryan T Fellers, Richard D LeDuc, Michael S Westphall, Paul M Thomas, Michael P Snyder, Joshua J Coon
The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins. Analytical chemistry 90 (14) (2018)
Roderick G Davis, Hae-Min Park, Kyunggon Kim, Joseph B Greer, Ryan T Fellers, Richard D LeDuc, Elena V Romanova, Stanislav S Rubakhin, Jonathan A Zombeck, Cong Wu, Peter M Yau, Peng Gao, Alexandra J van Nispen, Steven M Patrie, Paul M Thomas, Jonathan V Sweedler, Justin S Rhodes, Michael P Snyder
Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms Between Mouse Strains. Analytical chemistry 90 (6) (2018)
Elspeth M Beauchamp, Sameem M Abedin, Sara G Radecki, Mariafausta Fischietti, Ahmet Dirim Arslan, Gavin T Blyth, Angela Yang, Connor Lantz, Alissa Nelson, Young Ah Goo, Imo Akpan, Elizabeth A Eklund, Olga Frankfurt, Eleanor N Fish, Paul M Thomas, Jessica K Altman, Leonidas C Platanias
Identification and targeting of novel CDK9 complexes in acute myeloid leukemia. Blood 133 (11) (2018)
Mesut Eren, Aaron T Place, Paul M Thomas, Panagiotis Flevaris, Toshio Miyata, Douglas E Vaughan
PAI-1 is a critical regulator of FGF23 homeostasis. Science advances 3 (9) (2017)
Kenneth D Clevenger, Jin Woo Bok, Rosa Ye, Galen P Miley, Maria H Verdan, Thomas Velk, Cynthia Chen, KaHoua Yang, Matthew T Robey, Peng Gao, Matthew Lamprecht, Paul M Thomas, Md Nurul Islam, Jonathan M Palmer, Chengcang C Wu, Nancy P Keller, Michael P Snyder
A scalable platform to identify fungal secondary metabolites and their gene clusters. Nature chemical biology 13 (8) (2017)
Elena R Schroeter, Caroline J DeHart, Timothy P Cleland, Wenxia Zheng, Paul M Thomas, Michael P Snyder, Marshall Bern, Mary H Schweitzer
Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein. Journal of proteome research 16 (2) (2017)
Norelle C Wildburger, Thomas J Esparza, Richard D LeDuc, Ryan T Fellers, Paul M Thomas, Nigel J Cairns, Michael P Snyder, Randall J Bateman, David L Brody
Diversity of Amyloid-beta Proteoforms in the Alzheimer's Disease Brain. Scientific reports 7 (1) (2017)
Timothy P Cleland, Caroline J DeHart, Ryan T Fellers, Alexandra J VanNispen, Joseph B Greer, Richard D LeDuc, W Ryan Parker, Paul M Thomas, Michael P Snyder, Jennifer S Brodbelt
High-Throughput Analysis of Intact Human Proteins Using UVPD and HCD on an Orbitrap Mass Spectrometer. Journal of proteome research 16 (5) (2017)
Lissa C Anderson, Caroline J DeHart, Nathan K Kaiser, Ryan T Fellers, Donald F Smith, Joseph B Greer, Richard D LeDuc, Greg T Blakney, Paul M Thomas, Michael P Snyder, Christopher L Hendrickson
Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry. Journal of proteome research 16 (2) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Paul M Thomas