Nicholas M Riley

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Venues

Analytical chemistry

Proceedings of the National Academy of Sciences of the United States of America

ACS measurement science au

bioRxiv : the preprint server for biology

Stanford University

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Stanford University

United States

Postdoctoral Fellow :: Carolyn R. Bertozzi Group

Education History

University of Wisconsin Madison

United States

PHD :: Department of Chemistry, Joshua J. Coon Group

University of South Carolina

United States

BSC :: College of Arts and Sciences

Publications

Trenton M Peters-Clarke, Joshua J Coon, Nicholas M Riley
Instrumentation at the Leading Edge of Proteomics. Analytical chemistry 96 (20) (2024)
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Reuben A Hogan, Lauren E Pepi, Nicholas M Riley, Robert J Chalkley
"Comparative Analysis of Glycoproteomic Software Using a Tailored Glycan Database". bioRxiv : the preprint server for biology (2024)
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A Neely, Germán L Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M Peters-Clarke, Susan B Egbert, Simion Kreimer, Emma H Doud, Oliver M Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D Hegeman, Martín L Mayta, Anna G Duboff, Nicholas M Riley, Robert L Moritz, Jesse G Meyer
Comprehensive Overview of Bottom-Up Proteomics Using Mass Spectrometry. ACS measurement science au 4 (4) (2024)
Reuben A Hogan, Lauren E Pepi, Nicholas M Riley, Robert J Chalkley
"Comparative Analysis of Glycoproteomic Software Using a Tailored Glycan Database". bioRxiv : the preprint server for biology (2024)
Reuben A Hogan, Lauren E Pepi, Nicholas M Riley, Robert J Chalkley
"Comparative Analysis of Glycoproteomic Software Using a Tailored Glycan Database". bioRxiv : the preprint server for biology (2024)
Trenton M Peters-Clarke, Joshua J Coon, Nicholas M Riley
Instrumentation at the Leading Edge of Proteomics. Analytical chemistry (2024)
Trenton M Peters-Clarke, Joshua J Coon, Nicholas M Riley
Instrumentation at the Leading Edge of Proteomics. Analytical chemistry 96 (20) (2024)
Trenton M Peters-Clarke, Joshua J Coon, Nicholas M Riley
Instrumentation at the Leading Edge of Proteomics. Analytical chemistry 96 (20) (2024)
Benjamin A H Smith, Anja Deutzmann, Kristina M Correa, Corleone S Delaveris, Renumathy Dhanasekaran, Christopher G Dove, Delaney K Sullivan, Simon Wisnovsky, Jessica C Stark, John V Pluvinage, Srividya Swaminathan, Nicholas M Riley, Anand Rajan, Ravindra Majeti, Dean W Felsher, Carolyn R Bertozzi
MYC-driven synthesis of Siglec ligands is a glycoimmune checkpoint. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Benjamin A H Smith, Anja Deutzmann, Kristina M Correa, Corleone S Delaveris, Renumathy Dhanasekaran, Christopher G Dove, Delaney K Sullivan, Simon Wisnovsky, Jessica C Stark, John V Pluvinage, Srividya Swaminathan, Nicholas M Riley, Anand Rajan, Ravindra Majeti, Dean W Felsher, Carolyn R Bertozzi
MYC-driven synthesis of Siglec ligands is a glycoimmune checkpoint. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Corleone S Delaveris, Catherine L Wang, Nicholas M Riley, Sherry Li, Rishikesh U Kulkarni, Carolyn R Bertozzi
Microglia mediate contact-independent neuronal pruning via secreted Neuraminidase-3 associated with extracellular vesicles. bioRxiv : the preprint server for biology (2023)
Corleone S Delaveris, Catherine L Wang, Nicholas M Riley, Sherry Li, Rishikesh U Kulkarni, Carolyn R Bertozzi
Microglia Mediate Contact-Independent Neuronal Network Remodeling via Secreted Neuraminidase-3 Associated with Extracellular Vesicles. ACS central science 9 (11) (2023)
Green Ahn, Nicholas M Riley, Roarke A Kamber, Simon Wisnovsky, Salvador Moncayo von Hase, Michael C Bassik, Steven M Banik, Carolyn R Bertozzi
Elucidating the cellular determinants of targeted membrane protein degradation by lysosome-targeting chimeras. Science (New York, N.Y.) 382 (6668) (2023)
Benjamin A H Smith, Anja Deutzmann, Kristina M Correa, Corleone S Delaveris, Renumathy Dhanasekaran, Christopher G Dove, Delaney K Sullivan, Simon Wisnovsky, Jessica C Stark, John V Pluvinage, Srividya Swaminathan, Nicholas M Riley, Anand Rajan, Ravindra Majeti, Dean W Felsher, Carolyn R Bertozzi
MYC-driven synthesis of Siglec ligands is a glycoimmune checkpoint. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Benjamin A H Smith, Anja Deutzmann, Kristina M Correa, Corleone S Delaveris, Renumathy Dhanasekaran, Christopher G Dove, Delaney K Sullivan, Simon Wisnovsky, Jessica C Stark, John V Pluvinage, Srividya Swaminathan, Nicholas M Riley, Anand Rajan, Ravindra Majeti, Dean W Felsher, Carolyn R Bertozzi
MYC-driven synthesis of Siglec ligands is a glycoimmune checkpoint. Proceedings of the National Academy of Sciences of the United States of America 120 (11) (2023)
Kayvon Pedram, Nouf N Laqtom, D Judy Shon, Alessandro Di Spiezio, Nicholas M Riley, Paul Saftig, Monther Abu-Remaileh, Carolyn R Bertozzi
Lysosomal cathepsin D mediates endogenous mucin glycodomain catabolism in mammals. Proceedings of the National Academy of Sciences of the United States of America 119 (39) (2022)
Christopher M Richards, Sabrina Jabs, Wenjie Qiao, Lauren D Varanese, Michaela Schweizer, Peter R Mosen, Nicholas M Riley, Malte Klüssendorf, James R Zengel, Ryan A Flynn, Arjun Rustagi, John C Widen, Christine E Peters, Yaw Shin Ooi, Xuping Xie, Pei-Yong Shi, Vibhu Prasad, Andreas S Puschnik, Matthew M Bogyo, Carolyn R Bertozzi, Catherine A Blish, Dominic Winter, Claude M Nagamine, Thomas Braulke, Jan E Carette
The human disease gene LYSET is essential for lysosomal enzyme transport and viral infection. Science (New York, N.Y.) 378 (6615) (2022)
John Daly, Subhashis Sarkar, Alessandro Natoni, Jessica C Stark, Nicholas M Riley, Carolyn R Bertozzi, Mattias Carlsten, Michael E O'Dwyer
Targeting hypersialylation in multiple myeloma represents a novel approach to enhance NK cell-mediated tumor responses. Blood advances 6 (11) (2022)
Nicholas M Riley, Carolyn R Bertozzi
Deciphering O -glycoprotease substrate preferences with O-Pair Search. Molecular omics 18 (10) (2022)
Stacy A Malaker, Nicholas M Riley, D Judy Shon, Kayvon Pedram, Venkatesh Krishnan, Oliver Dorigo, Carolyn R Bertozzi
Revealing the human mucinome. Nature communications 13 (1) (2022)
Gina Bouchard, Fernando Jose Garcia Marques, Loukia G Karacosta, Weiruo Zhang, Abel Bermudez, Nicholas M Riley, Sushama Varma, Lindsey C Mehl, Jalen A Benson, Joseph B Shrager, Carolyn R Bertozzi, Sharon J Pitteri, Amato J Giaccia, Sylvia K Plevritis
Multi-omics analysis of spatially distinct stromal cells reveals tumor-induced O-glycosylation of the CDK4-pRB axis in fibroblasts at the invasive tumor edge. Cancer research (2021)
Green Ahn, Steven M Banik, Caitlyn L Miller, Nicholas M Riley, Jennifer R Cochran, Carolyn R Bertozzi
LYTACs that engage the asialoglycoprotein receptor for targeted protein degradation. Nature chemical biology 17 (9) (2021)
Simon Wisnovsky, Leonhard Möckl, Stacy A Malaker, Kayvon Pedram, Gaelen T Hess, Nicholas M Riley, Melissa A Gray, Benjamin A H Smith, Michael C Bassik, W E Moerner, Carolyn R Bertozzi
Genome-wide CRISPR screens reveal a specific ligand for the glycan-binding immune checkpoint receptor Siglec-7. Proceedings of the National Academy of Sciences of the United States of America 118 (5) (2021)
Corleone S Delaveris, Aaron J Wilk, Nicholas M Riley, Jessica C Stark, Samuel S Yang, Angela J Rogers, Thanmayi Ranganath, Kari C Nadeau, null null, Catherine A Blish, Carolyn R Bertozzi
Synthetic Siglec-9 Agonists Inhibit Neutrophil Activation Associated with COVID-19. ACS central science 7 (4) (2021)
Trenton M Peters-Clarke, Nicholas M Riley, Michael S Westphall, Joshua J Coon
Practical Effects of Intramolecular Hydrogen Rearrangement in Electron Transfer Dissociation-Based Proteomics. Journal of the American Society for Mass Spectrometry (2021)
John V Pluvinage, Jerry Sun, Christel Claes, Ryan A Flynn, Michael S Haney, Tal Iram, Xiangling Meng, Rachel Lindemann, Nicholas M Riley, Emma Danhash, Jean Paul Chadarevian, Emma Tapp, David Gate, Sravani Kondapavulur, Inma Cobos, Sundari Chetty, Anca M Pașca, Sergiu P Pașca, Elizabeth M Berry-Kravis, Carolyn R Bertozzi, Mathew Blurton Jones, Tony Wyss-Coray
The CD22-IGF2R interaction is a therapeutic target for microglial lysosome dysfunction in Niemann-Pick type C. Science translational medicine 13 (622) (2021)
Corleone S Delaveris, Shannon H Chiu, Nicholas M Riley, Carolyn R Bertozzi
Modulation of immune cell reactivity with cis-binding Siglec agonists. Proceedings of the National Academy of Sciences of the United States of America 118 (3) (2021)
Wei Wei, Nicholas M Riley, Andrew C Yang, Joon T Kim, Stephanie M Terrell, Veronica L Li, Marta Garcia-Contreras, Carolyn R Bertozzi, Jonathan Z Long
Cell type-selective secretome profiling in vivo. Nature chemical biology 17 (3) (2020)
Nicholas M Riley, Stacy A Malaker, Marc D Driessen, Carolyn R Bertozzi
Optimal Dissociation Methods Differ for N- and O-Glycopeptides. Journal of proteome research 19 (8) (2020)
Trenton M Peters-Clarke, Kevin L Schauer, Nicholas M Riley, Jean M Lodge, Michael S Westphall, Joshua J Coon
Optical Fiber-Enabled Photoactivation of Peptides and Proteins. Analytical chemistry 92 (18) (2020)
Nicholas M Riley, Stacy A Malaker, Carolyn R Bertozzi
Electron-Based Dissociation Is Needed for O-Glycopeptides Derived from OpeRATOR Proteolysis. Analytical chemistry 92 (22) (2020)
Kevin K Leung, Gary M Wilson, Lisa L Kirkemo, Nicholas M Riley, Joshua J Coon, James A Wells
Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes. Proceedings of the National Academy of Sciences of the United States of America 117 (14) (2020)
Jean M Lodge, Kevin L Schauer, Dain R Brademan, Nicholas M Riley, Evgenia Shishkova, Michael S Westphall, Joshua J Coon
Top-Down Characterization of an Intact Monoclonal Antibody Using Activated Ion Electron Transfer Dissociation. Analytical chemistry 92 (15) (2020)
Nicholas M Riley, Alexander S Hebert, Michael S Westphall, Joshua J Coon
Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis. Nature communications 10 (1) (2019)
Ellen R Wagner, Kevin S Myers, Nicholas M Riley, Joshua J Coon, Audrey P Gasch
PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production. PloS one 14 (5) (2019)
Kevin S Myers, Nicholas M Riley, Matthew E MacGilvray, Trey K Sato, Mick McGee, Justin Heilberger, Joshua J Coon, Audrey P Gasch
Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast. PLoS genetics 15 (3) (2019)
Alexander S Hebert, Christian Thöing, Nicholas M Riley, Nicholas W Kwiecien, Evgenia Shiskova, Romain Huguet, Helene L Cardasis, Andreas Kuehn, Shannon Eliuk, Vlad Zabrouskov, Michael S Westphall, Graeme C McAlister, Joshua J Coon
Improved Precursor Characterization for Data-Dependent Mass Spectrometry. Analytical chemistry 90 (3) (2018)
Nicholas M Riley, Jacek W Sikora, Henrique S Seckler, Joseph B Greer, Ryan T Fellers, Richard D LeDuc, Michael S Westphall, Paul M Thomas, Michael P Snyder, Joshua J Coon
The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins. Analytical chemistry 90 (14) (2018)
Matthew J P Rush, Nicholas M Riley, Michael S Westphall, Joshua J Coon
Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation. Analytical chemistry 90 (15) (2018)
Nicholas M Riley, Joshua J Coon
The Role of Electron Transfer Dissociation in Modern Proteomics. Analytical chemistry 90 (1) (2017)
Nicholas M Riley, Michael S Westphall, Alexander S Hebert, Joshua J Coon
Implementation of Activated Ion Electron Transfer Dissociation on a Quadrupole-Orbitrap-Linear Ion Trap Hybrid Mass Spectrometer. Analytical chemistry 89 (12) (2017)
Nicholas M Riley, Michael S Westphall, Joshua J Coon
Activated Ion-Electron Transfer Dissociation Enables Comprehensive Top-Down Protein Fragmentation. Journal of proteome research 16 (7) (2017)
Nicholas M Riley, Alexander S Hebert, Gerhard Dürnberger, Florian Stanek, Karl Mechtler, Michael S Westphall, Joshua J Coon
Phosphoproteomics with Activated Ion Electron Transfer Dissociation. Analytical chemistry 89 (12) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Nicholas M Riley