Patrick M Shih (P M Shih)

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 50

Top Venues

ACS synthetic biology

Plant physiology

Nature food

Biodesign research

University of California Davis

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Davis Jul 01 2018

United States

Assistant Professor :: Plant Biology

Joint BioEnergy Institute

United States

Postdoctoral Researcher :: Feedstocks Division

Publications

Collin R Barnum, Myeong-Je Cho, Kasey Markel, Patrick M Shih
Engineering Brassica Crops to Optimize Delivery of Bioactive Products Postcooking. ACS synthetic biology (2024)
Kasey Markel, Vlastimil Novak, Benjamin P Bowen, Yang Tian, Yi-Chun Chen, Sasilada Sirirungruang, Andy Zhou, Katherine B Louie, Trent R Northen, Aymerick Eudes, Henrik Vibe Scheller, Patrick M Shih
Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. Plant physiology 195 (1) (2024)
Collin R Barnum, Myeong-Je Cho, Kasey Markel, Patrick M Shih
Engineering Brassica Crops to Optimize Delivery of Bioactive Products Postcooking. ACS synthetic biology 13 (3) (2024)
Collin R Barnum, Bruna Paviani, Garret Couture, Chad Masarweh, Ye Chen, Yu-Ping Huang, Kasey Markel, David A Mills, Carlito B Lebrilla, Daniela Barile, Minliang Yang, Patrick M Shih
Engineered plants provide a photosynthetic platform for the production of diverse human milk oligosaccharides. Nature food (2024)
Noam Prywes, Naiya R Phillips, Luke M Oltrogge, Sebastian Lindner, Yi-Chin Candace Tsai, Benoit de Pins, Aidan E Cowan, Leah J Taylor-Kearney, Hana A Chang, Laina N Hall, Daniel Bellieny-Rabelo, Hunter M Nisonoff, Rachel F Weissman, Avi I Flamholz, David Ding, Abhishek Y Bhatt, Patrick M Shih, Oliver Mueller-Cajar, Ron Milo, David F Savage
A map of the rubisco biochemical landscape. bioRxiv : the preprint server for biology (2024)
Kasey Markel, Vlastimil Novak, Benjamin P Bowen, Yang Tian, Yi-Chun Chen, Sasilada Sirirungruang, Andy Zhou, Katherine B Louie, Trent R Northen, Aymerick Eudes, Henrik Vibe Scheller, Patrick M Shih
Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. Plant physiology (2024)
Collin R Barnum, Myeong-Je Cho, Kasey Markel, Patrick M Shih
Engineering Brassica Crops to Optimize Delivery of Bioactive Products Postcooking. ACS synthetic biology 13 (3) (2024)
Collin R Barnum, Bruna Paviani, Garret Couture, Chad Masarweh, Ye Chen, Yu-Ping Huang, Kasey Markel, David A Mills, Carlito B Lebrilla, Daniela Barile, Minliang Yang, Patrick M Shih
Engineered plants provide a photosynthetic platform for the production of diverse human milk oligosaccharides. Nature food 5 (6) (2024)
Collin R Barnum, Bruna Paviani, Garret Couture, Chad Masarweh, Ye Chen, Yu-Ping Huang, Kasey Markel, David A Mills, Carlito B Lebrilla, Daniela Barile, Minliang Yang, Patrick M Shih
Engineered plants provide a photosynthetic platform for the production of diverse human milk oligosaccharides. Nature food 5 (6) (2024)
Collin R Barnum, Myeong-Je Cho, Kasey Markel, Patrick M Shih
Engineering Brassica Crops to Optimize Delivery of Bioactive Products Postcooking. ACS synthetic biology (2024)
Collin R Barnum, Myeong-Je Cho, Kasey Markel, Patrick M Shih
Engineering Brassica Crops to Optimize Delivery of Bioactive Products Postcooking. ACS synthetic biology 13 (3) (2024)
Noam Prywes, Naiya R Phillips, Luke M Oltrogge, Sebastian Lindner, Yi-Chin Candace Tsai, Benoit de Pins, Aidan E Cowan, Leah J Taylor-Kearney, Hana A Chang, Laina N Hall, Daniel Bellieny-Rabelo, Hunter M Nisonoff, Rachel F Weissman, Avi I Flamholz, David Ding, Abhishek Y Bhatt, Patrick M Shih, Oliver Mueller-Cajar, Ron Milo, David F Savage
A map of the rubisco biochemical landscape. bioRxiv : the preprint server for biology (2024)
Kasey Markel, Vlastimil Novak, Benjamin P Bowen, Yang Tian, Yi-Chun Chen, Sasilada Sirirungruang, Andy Zhou, Katherine B Louie, Trent R Northen, Aymerick Eudes, Henrik Vibe Scheller, Patrick M Shih
Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. Plant physiology 195 (1) (2024)
Kasey Markel, Vlastimil Novak, Benjamin P Bowen, Yang Tian, Yi-Chun Chen, Sasilada Sirirungruang, Andy Zhou, Katherine B Louie, Trent R Northen, Aymerick Eudes, Henrik Vibe Scheller, Patrick M Shih
Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. Plant physiology 195 (1) (2024)
Noam Prywes, Naiya R Phillips, Luke M Oltrogge, Sebastian Lindner, Yi-Chin Candace Tsai, Benoit de Pins, Aidan E Cowan, Leah J Taylor-Kearney, Hana A Chang, Laina N Hall, Daniel Bellieny-Rabelo, Hunter M Nisonoff, Rachel F Weissman, Avi I Flamholz, David Ding, Abhishek Y Bhatt, Patrick M Shih, Oliver Mueller-Cajar, Ron Milo, David F Savage
A map of the rubisco biochemical landscape. bioRxiv : the preprint server for biology (2024)
Collin R Barnum, Myeong-Je Cho, Kasey Markel, Patrick M Shih
Engineering Brassica Crops to Optimize Delivery of Bioactive Products Postcooking. ACS synthetic biology 13 (3) (2024)
Collin R Barnum, Bruna Paviani, Garret Couture, Chad Masarweh, Ye Chen, Yu-Ping Huang, Kasey Markel, David A Mills, Carlito B Lebrilla, Daniela Barile, Minliang Yang, Patrick M Shih
Engineered plants provide a photosynthetic platform for the production of diverse human milk oligosaccharides. Nature food (2024)
Collin R Barnum, Bruna Paviani, Garret Couture, Chad Masarweh, Ye Chen, Yu-Ping Huang, Kasey Markel, David A Mills, Carlito B Lebrilla, Daniela Barile, Minliang Yang, Patrick M Shih
Engineered plants provide a photosynthetic platform for the production of diverse human milk oligosaccharides. Nature food 5 (6) (2024)
Collin R Barnum, Myeong-Je Cho, Kasey Markel, Patrick M Shih
Engineering Brassica Crops to Optimize Delivery of Bioactive Products Postcooking. ACS synthetic biology 13 (3) (2024)
Andy Zhou, Liam D Kirkpatrick, Izaiah J Ornelas, Lorenzo J Washington, Niklas F C Hummel, Christopher W Gee, Sophia N Tang, Collin R Barnum, Henrik V Scheller, Patrick M Shih
A Suite of Constitutive Promoters for Tuning Gene Expression in Plants. ACS synthetic biology (2023)
Andy Zhou, Liam D Kirkpatrick, Izaiah J Ornelas, Lorenzo J Washington, Niklas F C Hummel, Christopher W Gee, Sophia N Tang, Collin R Barnum, Henrik V Scheller, Patrick M Shih
A Suite of Constitutive Promoters for Tuning Gene Expression in Plants. ACS synthetic biology 12 (5) (2023)
Andy Zhou, Liam D Kirkpatrick, Izaiah J Ornelas, Lorenzo J Washington, Niklas F C Hummel, Christopher W Gee, Sophia N Tang, Collin R Barnum, Henrik V Scheller, Patrick M Shih
A Suite of Constitutive Promoters for Tuning Gene Expression in Plants. ACS synthetic biology (2023)
Allison N Pearson, Mitchell G Thompson, Liam D Kirkpatrick, Cindy Ho, Khanh M Vuu, Lucas M Waldburger, Jay D Keasling, Patrick M Shih
The pGinger Family of Expression Plasmids. Microbiology spectrum (2023)
Sasilada Sirirungruang, Collin R Barnum, Sophia N Tang, Patrick M Shih
Plant glycosyltransferases for expanding bioactive glycoside diversity. Natural product reports (2023)
Andy Zhou, Liam D Kirkpatrick, Izaiah J Ornelas, Lorenzo J Washington, Niklas F C Hummel, Christopher W Gee, Sophia N Tang, Collin R Barnum, Henrik V Scheller, Patrick M Shih
A Suite of Constitutive Promoters for Tuning Gene Expression in Plants. ACS synthetic biology 12 (5) (2023)
Andy Zhou, Liam D Kirkpatrick, Izaiah J Ornelas, Lorenzo J Washington, Niklas F C Hummel, Christopher W Gee, Sophia N Tang, Collin R Barnum, Henrik V Scheller, Patrick M Shih
A Suite of Constitutive Promoters for Tuning Gene Expression in Plants. ACS synthetic biology 12 (5) (2023)
Lucas Waldburger, Mitchell G Thompson, Alexandra J Weisberg, Namil Lee, Jeff H Chang, Jay D Keasling, Patrick M Shih
Transcriptome architecture of the three main lineages of agrobacteria. mSystems (2023)
Simon Alamos, Patrick M Shih
How to engineer the unknown: Advancing a quantitative and predictive understanding of plant and soil biology to address climate change. PLoS biology 21 (7) (2023)
Andy Zhou, Liam D Kirkpatrick, Izaiah J Ornelas, Lorenzo J Washington, Niklas F C Hummel, Christopher W Gee, Sophia N Tang, Collin R Barnum, Henrik V Scheller, Patrick M Shih
A Suite of Constitutive Promoters for Tuning Gene Expression in Plants. ACS synthetic biology (2023)
T Brunoir, C Mulligan, Ainara Sistiaga, K M Vuu, Patrick M Shih, Shane S O'Reilly, Roger Everett Summons, David A Gold
Common origin of sterol biosynthesis points to a feeding strategy shift in Neoproterozoic animals. Nature communications 14 (1) (2023)
Andy Zhou, Liam D Kirkpatrick, Izaiah J Ornelas, Lorenzo J Washington, Niklas F C Hummel, Christopher W Gee, Sophia N Tang, Collin R Barnum, Henrik V Scheller, Patrick M Shih
A Suite of Constitutive Promoters for Tuning Gene Expression in Plants. ACS synthetic biology (2023)
Collin R Barnum, Benjamin J Endelman, Izaiah J Ornelas, Roxanna M Pignolet, Patrick M Shih
Optimization of Heterologous Glucoraphanin Production In Planta . ACS synthetic biology 11 (5) (2022)
Min-Yao Jhu, Moran Farhi, Li Wang, Richard N Philbrook, Michael S Belcher, Hokuto Nakayama, Kristina S Zumstein, Steven D Rowland, Mily Ron, Patrick M Shih, Neelima R Sinha
Heinz-resistant tomato cultivars exhibit a lignin-based resistance to field dodder (Cuscuta campestris) parasitism. Plant physiology 189 (1) (2022)
Sasilada Sirirungruang, Kasey Markel, Patrick M Shih
Plant-based engineering for production of high-valued natural products. Natural product reports 39 (7) (2022)
Albert K Liu, Jose Henrique Pereira, Alexander J Kehl, Daniel J Rosenberg, Douglas J Orr, Simon K S Chu, Douglas M Banda, Michal Hammel, Paul D Adams, Justin B Siegel, Patrick M Shih
Structural plasticity enables evolution and innovation of RuBisCO assemblies. Science advances 8 (34) (2022)
Yang Tian, Minliang Yang, Chien-Yuan Lin, Joon-Hyun Park, Chuan-Yin Wu, Ramu Kakumanu, Christopher M De Ben, Jutta Dalton, Khanh M Vuu, Patrick M Shih, Edward E K Baidoo, Stephen Temple, Daniel H Putnam, Henrik V Scheller, Corinne D Scown, Aymerick Eudes
Correction to "Expression of Dehydroshikimate Dehydratase in Sorghum Improves Biomass Yield, Accumulation of Protocatechuate, and Biorefinery Economics". ACS sustainable chemistry & engineering 10 (43) (2022)
Setsuko Wakao, Patrick M Shih, Katharine Guan, Wendy Schackwitz, Joshua Ye, Dhruv Patel-Tupper, Robert M Shih, Rachel M Dent, Mansi Chovatia, Aditi Sharma, Joel Martin, Chia-Lin Wei, Krishna K Niyogi
Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. PLoS genetics 17 (9) (2021)
Changtian Pan, Xincheng Wu, Kasey Markel, Aimee A Malzahn, Neil Kundagrami, Simon Sretenovic, Yingxiao Zhang, Yanhao Cheng, Patrick M Shih, Yiping Qi
CRISPR-Act3.0 for highly efficient multiplexed gene activation in plants. Nature plants 7 (7) (2021)
Mitchell G Thompson, Christopher B Eiben, Allison N Pearson, Patrick M Shih
Draft Genome Sequence of Mycobacterium sp. Strain JC1 DSM 3803. Microbiology resource announcements 10 (19) (2021)
Guoliang Yuan, Md Mahmudul Hassan, Degao Liu, Sung Don Lim, Won Cheol Yim, John C Cushman, Kasey Markel, Patrick M Shih, Haiwei Lu, David J Weston, Jin-Gui Chen, Timothy J Tschaplinski, Gerald A Tuskan, Xiaohan Yang
Biosystems Design to Accelerate C 3 -to-CAM Progression. Biodesign research 2020 (2020)
Mitchell G Thompson, William M Moore, Niklas F C Hummel, Allison N Pearson, Collin R Barnum, Henrik Vibe Scheller, Patrick M Shih
Agrobacterium tumefaciens : A Bacterium Primed for Synthetic Biology. Biodesign research 2020 (2020)
Mitchell G Thompson, Pablo Cruz-Morales, William M Moore, Allison N Pearson, Jay D Keasling, Henrik V Scheller, Patrick M Shih
Draft Genome Sequence of Agrobacterium fabrum ARqua1. Microbiology resource announcements 9 (27) (2020)
Douglas M Banda, Jose H Pereira, Albert K Liu, Douglas J Orr, Michal Hammel, Christine He, Martin A J Parry, Elizabete Carmo-Silva, Paul D Adams, Jillian F Banfield, Patrick M Shih
Novel bacterial clade reveals origin of form I Rubisco. Nature plants 6 (9) (2020)
Michael S Belcher, Khanh M Vuu, Andy Zhou, Nasim Mansoori, Amanda Agosto Ramos, Mitchell G Thompson, Henrik Vibe Scheller, Dominique Loqué, Patrick M Shih
Design of orthogonal regulatory systems for modulating gene expression in plants. Nature chemical biology 16 (8) (2020)
Mitchell G Thompson, Matthew R Incha, Allison N Pearson, Matthias Schmidt, William A Sharpless, Christopher B Eiben, Pablo Cruz-Morales, Jacquelyn M Blake-Hedges, Yuzhong Liu, Catharine A Adams, Robert W Haushalter, Rohith N Krishna, Patrick Lichtner, Lars M Blank, Aindrila Mukhopadhyay, Adam M Deutschbauer, Patrick M Shih, Jay D Keasling
Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing. Applied and environmental microbiology 86 (21) (2020)
Minliang Yang, Nawa Raj Baral, Blake A Simmons, Jennifer C Mortimer, Patrick M Shih, Corinne D Scown
Accumulation of high-value bioproducts in planta can improve the economics of advanced biofuels. Proceedings of the National Academy of Sciences of the United States of America 117 (15) (2020)
Xiaohan Yang, June I Medford, Kasey Markel, Patrick M Shih, Henrique C De Paoli, Cong T Trinh, Alistair J McCormick, Raphael Ployet, Steven G Hussey, Alexander A Myburg, Poul Erik Jensen, Md Mahmudul Hassan, Jin Zhang, Wellington Muchero, Udaya C Kalluri, Hengfu Yin, Renying Zhuo, Paul E Abraham, Jin-Gui Chen, David J Weston, Yinong Yang, Degao Liu, Yi Li, Jessy L Labbé, Bing Yang, Jun Hyung Lee, Robert W Cottingham, Stanton Martin, Mengzhu Lu, Timothy J Tschaplinski, Guoliang Yuan, Haiwei Lu, Priya Ranjan, Julie C Mitchell, Stan D Wullschleger, Gerald A Tuskan
Plant Biosystems Design Research Roadmap 1.0. Biodesign research 2020 (2020)
Paula B Matheus Carnevali, Frederik Schulz, Cindy J Castelle, Rose S Kantor, Patrick M Shih, Itai Sharon, Joanne M Santini, Matthew R Olm, Yuki Amano, Brian C Thomas, Karthik Anantharaman, David Burstein, Eric D Becraft, Ramunas Stepanauskas, Tanja Woyke, Jillian F Banfield
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature communications 10 (1) (2019)
Patrick M Shih
Early Cyanobacteria and the Innovation of Microbial Sunscreens. mBio 10 (3) (2019)
Paula B Matheus Carnevali, Frederik Schulz, Cindy J Castelle, Rose S Kantor, Patrick M Shih, Itai Sharon, Joanne M Santini, Matthew R Olm, Yuki Amano, Brian C Thomas, Karthik Anantharaman, David Burstein, Eric D Becraft, Ramunas Stepanauskas, Tanja Woyke, Jillian F Banfield
Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature communications 10 (1) (2019)

Patrick M Shih.css-eqlu8i{font-size:small;padding-left:4px;} (P M Shih)

Publication Activity (10 Years)

Top Topics

Top Venues

Patrick M Shih (P M Shih)