Natalia N Ivanova (Natalia Ivanova)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 34

Top Topics

Microbial Community

Dna Methylation

Top Venues

Microbiology resource announcements

Scientific data

Nature biotechnology

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements (2024)
Rasmus O Jensen, Frederik Schulz, Simon Roux, Dawn M Klingeman, Wayne P Mitchell, Daniel Udwary, Sarah Moraïs, Vinicio Reynoso, James Winkler, Shilpa Nagaraju, Sashini De Tissera, Nicole Shapiro, Natalia N Ivanova, T B K Reddy, Itzhak Mizrahi, Sagar M Utturkar, Edward A Bayer, Tanja Woyke, Nigel J Mouncey, Michael C Jewett, Séan D Simpson, Michael Koepke, David T Jones, Steven D Brown
Phylogenomics and genetic analysis of solvent-producing Clostridium species. Scientific data 11 (1) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Mark Soghomonian, Angela Soghomonian, Matthew A Escobar, Vera Thiel, Markus Göker, Natalia N Ivanova, Rekha Seshadri, Kalyani Maitra
Draft genome sequence of Nitrobacter vulgaris DSM 10236 T . Microbiology resource announcements (2024)
Mark Soghomonian, Angela Soghomonian, Matthew A Escobar, Vera Thiel, Markus Göker, Natalia N Ivanova, Rekha Seshadri, Kalyani Maitra
Draft genome sequence of Nitrobacter vulgaris DSM 10236 T . Microbiology resource announcements 13 (8) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Mark Soghomonian, Angela Soghomonian, Matthew A Escobar, Vera Thiel, Markus Göker, Natalia N Ivanova, Rekha Seshadri, Kalyani Maitra
Draft genome sequence of Nitrobacter vulgaris DSM 10236 T . Microbiology resource announcements 13 (8) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Rasmus O Jensen, Frederik Schulz, Simon Roux, Dawn M Klingeman, Wayne P Mitchell, Daniel Udwary, Sarah Moraïs, Vinicio Reynoso, James Winkler, Shilpa Nagaraju, Sashini De Tissera, Nicole Shapiro, Natalia N Ivanova, T B K Reddy, Itzhak Mizrahi, Sagar M Utturkar, Edward A Bayer, Tanja Woyke, Nigel J Mouncey, Michael C Jewett, Séan D Simpson, Michael Koepke, David T Jones, Steven D Brown
Phylogenomics and genetic analysis of solvent-producing Clostridium species. Scientific data 11 (1) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Mark Soghomonian, Angela Soghomonian, Matthew A Escobar, Vera Thiel, Markus Göker, Natalia N Ivanova, Rekha Seshadri, Kalyani Maitra
Draft genome sequence of Nitrobacter vulgaris DSM 10236 T . Microbiology resource announcements 13 (8) (2024)
Keely Berner, Michelle Zoza-Veloz, Matt Nolan, Danielle Graham, Natalia N Ivanova, Rekha Seshadri, Stefan Spring, Matthew A Escobar
Draft genome sequences of Butyrivibrio hungatei DSM 14810 (JK 615 T ) and Butyrivibrio fibrisolvens DSM 3071 (D1 T ). Microbiology resource announcements (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements (2024)
Rasmus O Jensen, Frederik Schulz, Simon Roux, Dawn M Klingeman, Wayne P Mitchell, Daniel Udwary, Sarah Moraïs, Vinicio Reynoso, James Winkler, Shilpa Nagaraju, Sashini De Tissera, Nicole Shapiro, Natalia N Ivanova, T B K Reddy, Itzhak Mizrahi, Sagar M Utturkar, Edward A Bayer, Tanja Woyke, Nigel J Mouncey, Michael C Jewett, Séan D Simpson, Michael Koepke, David T Jones, Steven D Brown
Phylogenomics and genetic analysis of solvent-producing Clostridium species. Scientific data 11 (1) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T B K Reddy, Sara Calhoun, Richard D Hayes, Robin R Rohwer, Zhichao Zhou, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Nigel J Mouncey, Tijana Glavina Del Rio, Igor V Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D McMahon, Tanja Woyke, Emiley A Eloe-Fadrosh
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota. Scientific data 11 (1) (2024)
Georgios A Pavlopoulos, Fotis A Baltoumas, Sirui Liu, Oguz Selvitopi, Antonio Pedro Camargo, Stephen Nayfach, Ariful Azad, Simon Roux, Lee Call, Natalia N Ivanova, I Min Chen, A David Páez-Espino, Evangelos Karatzas, null null, Ioannis Iliopoulos, Konstantinos T Konstantinidis, James M Tiedje, Jennifer Pett-Ridge, Julien S Baker, Axel Visel, Christos A Ouzounis, Sergey Ovchinnikov, Aydın Buluç, Nikos C Kyrpides
Unraveling the functional dark matter through global metagenomics. Nature (2023)
Dongying Wu, Natalia N Ivanova
A tale of two codes. Nature reviews. Microbiology (2023)
Antonio Pedro Camargo, Lee Call, Simon Roux, Stephen Nayfach, Marcel Huntemann, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Supratim Mukherjee, T B K Reddy, I-Min A Chen, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Tanja Woyke, David A Baltrus, Salvador Castañeda-Barba, María de Toro, Barbara E Funnell, James P J Hall, Aindrila Mukhopadhyay, Eduardo P C Rocha, Thibault Stalder, Eva M Top, Nikos C Kyrpides
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids research (2023)
Jean-Marie Volland, Silvina Gonzalez-Rizzo, Olivier Gros, Tomáš Tyml, Natalia N Ivanova, Frederik Schulz, Danielle Goudeau, Nathalie H Elisabeth, Nandita Nath, Daniel W Udwary, Rex R Malmstrom, Chantal Guidi-Rontani, Susanne Bolte-Kluge, Karen M Davies, Maïtena R Jean, Jean-Louis Mansot, Nigel J Mouncey, Esther R Angert, Tanja Woyke, Shailesh V Date
A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles. Science (New York, N.Y.) 376 (6600) (2022)
Stephen Nayfach, A David Páez-Espino, Lee Call, Soo Jen Low, Hila Sberro, Natalia N Ivanova, Amy D Proal, Michael A Fischbach, Ami Siddharth Bhatt, Philip Hugenholtz, Nikos C Kyrpides
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nature microbiology 6 (7) (2021)
Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A Boulton, Kerrie Barry, Bánk Beszteri, Corina P D Brussaard, Alicia Clum, Christopher Daum, Emiley A Eloe-Fadrosh, Allison Fong, Brian Foster, Bryce Foster, Michael Ginzburg, Marcel Huntemann, Natalia N Ivanova, Nikos C Kyrpides, Erika Lindquist, Supratim Mukherjee, Krishnaveni Palaniappan, T B K Reddy, Mariam R Rizkallah, Simon Roux, Klaas Timmermans, Susannah G Tringe, Willem H van de Poll, Neha Varghese, Klaus U Valentin, Timothy M Lenton, Igor V Grigoriev, Richard M Leggett, Vincent Moulton, Thomas Mock
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole. Nature communications 12 (1) (2021)
Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel W Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, A David Páez-Espino, I-Min A Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T B K Reddy, Torben Nielsen, Edward Kirton, José P Faria, Janaka N Edirisinghe, Christopher S Henry, Sean P Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M Wood-Charlson, Adam P Arkin, Susannah G Tringe, Axel Visel, null null, Tanja Woyke, Nigel J Mouncey, Natalia N Ivanova, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
Publisher Correction: A genomic catalog of Earth's microbiomes. Nature biotechnology (2020)
Jessica K Jarett, Mária Džunková, Frederik Schulz, Simon Roux, A David Páez-Espino, Emiley A Eloe-Fadrosh, Sean P Jungbluth, Natalia N Ivanova, John R Spear, Stephanie A Carr, Christopher B Trivedi, Frank A Corsetti, Hope A Johnson, Eric Becraft, Nikos C Kyrpides, Ramunas Stepanauskas, Tanja Woyke
Insights into the dynamics between viruses and their hosts in a hot spring microbial mat. The ISME journal 14 (10) (2020)
Andriy Sheremet, Gareth M Jones, Jessica K Jarett, Robert M Bowers, Isaac Bedard, Cassandra Culham, Emiley A Eloe-Fadrosh, Natalia N Ivanova, Rex R Malmstrom, Stephen E Grasby, Tanja Woyke, Peter F Dunfield
Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil. Environmental microbiology 22 (8) (2020)
Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel W Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, A David Páez-Espino, I-Min A Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T B K Reddy, Torben Nielsen, Edward Kirton, José P Faria, Janaka N Edirisinghe, Christopher S Henry, Sean P Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M Wood-Charlson, Adam P Arkin, Susannah G Tringe, Axel Visel, null null, Tanja Woyke, Nigel J Mouncey, Natalia N Ivanova, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
A genomic catalog of Earth's microbiomes. Nature biotechnology 39 (4) (2020)
Brent Nowinski, Christa B Smith, Courtney M Thomas, Kaitlin Esson, Roman Marin, Christina M Preston, James M Birch, Christopher A Scholin, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Tijana Glavina Del Rio, William B Whitman, Ronald P Kiene, Emiley A Eloe-Fadrosh, Mary Ann Moran
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. Scientific data 6 (1) (2019)
Eva Högfors-Rönnholm, Margarita Lopez-Fernandez, Stephan Christel, Diego Brambilla, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Daniel Lundin, Sten Engblom, Mark Dopson
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials. Scientific data 6 (1) (2019)
Antonio Pedro Camargo, Rafael Soares Correa de Souza, Patrícia de Britto Costa, Isabel Rodrigues Gerhardt, Ricardo Augusto Dante, Grazielle Sales Teodoro, Anna Abrahão, Hans Lambers, Marcelo Falsarella Carazzolle, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paulo Arruda, Rafael Silva Oliveira
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. Scientific data 6 (1) (2019)
Devin F R Doud, Robert M Bowers, Frederik Schulz, Markus De Raad, Kai Deng, Angela Tarver, Evan Glasgow, Kirk Vander Meulen, Brian Fox, Sam Deutsch, Yasuo Yoshikuni, Trent R Northen, Brian P Hedlund, Steven W Singer, Natalia N Ivanova, Tanja Woyke
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. The ISME journal 14 (3) (2019)
Simon Roux, Mart Krupovic, Rebecca A Daly, Adair L Borges, Stephen Nayfach, Frederik Schulz, Allison Sharrar, Paula B Matheus Carnevali, Jan-Fang Cheng, Natalia N Ivanova, Joseph Bondy-Denomy, Kelly C Wrighton, Tanja Woyke, Axel Visel, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes. Nature microbiology 4 (11) (2019)
Simon Roux, Evelien M Adriaenssens, Bas E Dutilh, Eugene V Koonin, Andrew M Kropinski, Mart Krupovic, Jens H Kuhn, Rob Lavigne, J Rodney Brister, Darren P Martin, Clara Amid, Ramy K Aziz, Seth R Bordenstein, Peer Bork, Mya Breitbart, Guy R Cochrane, Rebecca A Daly, Christelle Desnues, Melissa B Duhaime, Joanne B Emerson, François Enault, Jed A Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L Hurwitz, Natalia N Ivanova, Jessica M Labonté, Kyung-Bum Lee, Rex R Malmstrom, Manuel Martinez-Garcia, Ilene Karsch Mizrachi, Hiroyuki Ogata, A David Páez-Espino, Marie-Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodriguez-Valera, Karyna Rosario, Lynn Schriml, Frederik Schulz, Grieg F Steward, Matthew B Sullivan, Shinichi Sunagawa, Curtis A Suttle, Ben Temperton, Susannah G Tringe, Rebecca Vega Thurber, Nicole Suzanne Webster, Katrine L Whiteson, Steven W Wilhelm, K Eric Wommack, Tanja Woyke, Kelly C Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark J Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature biotechnology 37 (1) (2018)
Frederik Schulz, Natalya Yutin, Natalia N Ivanova, Davi R Ortega, Tae Kwon Lee, Julia Vierheilig, Holger Daims, Matthias Horn, Michael Wagner, George J Lu, Nikos C Kyrpides, Eugene V Koonin, Tanja Woyke
Giant viruses with an expanded complement of translation system components. Science (New York, N.Y.) 356 (6333) (2017)