Se Jin Song

ORCID

Publication Activity (10 Years)

Years Active: 2016-2022
Publications (10 Years): 17

Top Venues

University of California San Diego

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Diego Feb 18o 2019

United States

Director of Research :: Center for Microbiome Innovation

Publications

Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan M Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention. Advanced biology 6 (8) (2022)
Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Rob Knight
Microbiome analyses of blood and tissues suggest cancer diagnostic approach. Nature 579 (7800) (2020)
Se Jin Song, Jon G Sanders, Frédéric Delsuc, Jessica Metcalf, Katherine Amato, Michael W Taylor, Florent Mazel, Holly L Lutz, Kevin Winker, Gary R Graves, Gregory Humphrey, Jack A Gilbert, Shannon J Hackett, Kevin P White, Heather R Skeen, Sarah M Kurtis, Jack Withrow, Thomas Braile, Matthew Miller, Kevin G McCracken, James M Maley, Vanessa O Ezenwa, Allison Williams, Jessica M Blanton, Valerie J McKenzie, Rob Knight
Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. mBio 11 (1) (2020)
Bryn C Taylor, Franck Lejzerowicz, Marion Poirel, Justin P Shaffer, Lingjing Jiang, Alexander A Aksenov, Nicole Litwin, Gregory Humphrey, Cameron Martino, Sandrine Miller-Montgomery, Pieter C Dorrestein, Patrick Veiga, Se Jin Song, Daniel McDonald, Muriel Derrien, Rob Knight
Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. mSystems 5 (2) (2020)
Se Jin Song, Douglas C Woodhams, Cameron Martino, Celeste Allaband, Andre Mu, Sandrine Javorschi-Miller-Montgomery, Jan S Suchodolski, Rob Knight
Engineering the microbiome for animal health and conservation. Experimental biology and medicine (Maywood, N.J.) 244 (6) (2019)
James T Morton, Alexander A Aksenov, Louis Felix Nothias, James R Foulds, Robert A Quinn, Michelle H Badri, Tami L Swenson, Marc W Van Goethem, Trent R Northen, Yoshiki Vazquez-Baeza, Mingxun Wang, Nicholas A Bokulich, Aaron Watters, Se Jin Song, Richard Bonneau, Pieter C Dorrestein, Rob Knight
Learning representations of microbe-metabolite interactions. Nature methods 16 (12) (2019)
Elin Videvall, Se Jin Song, Hanna M Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, Schalk W P Cloete, Rob Knight, Charlie K Cornwallis
Major shifts in gut microbiota during development and its relationship to growth in ostriches. Molecular ecology 28 (10) (2019)
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric John Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodriguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan P Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo-Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine A Lozupone, Massoud Maher, Clarisse A Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima R Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R Rivers, Michael Scott Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin Johan Jozias van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature biotechnology 37 (8) (2019)
Daniel McDonald, Embriette Hyde, Justine W Debelius, James T Morton, Antonio Gonzalez, Gail Ackermann, Alexander A Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C Dorrestein, Robert R Dunn, Ashkaan K Fahimipour, James Gaffney, Jack A Gilbert, Grant Gogul, Jessica L Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A Jackson, Stefan Janssen, Dilip V Jeste, Lingjing Jiang, Scott T Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V Melnik, Jessica L Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D Swafford, Varykina G Thackray, Luke R Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, null null, Rob Knight
American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems 3 (3) (2018)
Katherine Ryan Amato, Jon G Sanders, Se Jin Song, Michael Nute, Jessica L Metcalf, Luke R Thompson, James T Morton, Amnon Amir, Valerie J McKenzie, Gregory Humphrey, Grant Gogul, James Gaffney, Andrea L Baden, Gillian A O Britton, Frank P Cuozzo, Anthony Di Fiore, Nathaniel J Dominy, Tony L Goldberg, Andres Gomez, Martin M Kowalewski, Rebecca J Lewis, Andres Link, Michelle L Sauther, Stacey Tecot, Bryan A White, Karen E Nelson, Rebecca M Stumpf, Rob Knight, Steven R Leigh
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes. The ISME journal 13 (3) (2018)
Jessica L Metcalf, Se Jin Song, James T Morton, Sophie Weiss, Andaine Seguin-Orlando, Frédéric Joly, Claudia Feh, Pierre Taberlet, Eric Coissac, Amnon Amir, Eske Willerslev, Rob Knight, Valerie McKenzie, Ludovic Orlando
Evaluating the impact of domestication and captivity on the horse gut microbiome. Scientific reports 7 (1) (2017)
James T Morton, Jon Sanders, Robert A Quinn, Daniel McDonald, Antonio Gonzalez, Yoshiki Vázquez-Baeza, Jose A Navas-Molina, Se Jin Song, Jessica L Metcalf, Embriette R Hyde, Manuel Lladser, Pieter C Dorrestein, Rob Knight
Balance Trees Reveal Microbial Niche Differentiation. mSystems 2 (1) (2017)
Embriette R Hyde, Jose A Navas-Molina, Se Jin Song, Jordan G Kueneman, Gail Ackermann, Cesar Cardona, Gregory Humphrey, Don Boyer, Tom Weaver, Joseph R Mendelson, Valerie J McKenzie, Jack A Gilbert, Rob Knight
The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat. mSystems 1 (4) (2016)
Philipp Engel, Waldan K Kwong, Quinn McFrederick, Kirk E Anderson, Seth Michael Barribeau, James Angus Chandler, R Scott Cornman, Jacques Dainat, Joachim R de Miranda, Vincent Doublet, Olivier Emery, Jay D Evans, Laurent Farinelli, Michelle L Flenniken, Fredrik Granberg, Juris A Grasis, Laurent Gauthier, Juliette Hayer, Hauke Koch, Sarah Kocher, Vincent G Martinson, Nancy Moran, Monica Munoz-Torres, Irene Newton, Robert J Paxton, Eli Powell, Ben M Sadd, Paul Schmid-Hempel, Regula Schmid-Hempel, Se Jin Song, Ryan S Schwarz, Dennis vanEngelsdorp, Benjamin Dainat
The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions. mBio 7 (2) (2016)
Jean F Ruiz-Calderon, Humberto Cavallin, Se Jin Song, Atila Novoselac, Luis R Pericchi, Jean N Hernandez, Rafael Rios, OraLee H Branch, Henrique Pereira, Luciana C Paulino, Martin J Blaser, Rob Knight, Maria G Dominguez-Bello
Walls talk: Microbial biogeography of homes spanning urbanization. Science advances 2 (2) (2016)
Robert A Quinn, Jose A Navas-Molina, Embriette R Hyde, Se Jin Song, Yoshiki Vázquez-Baeza, Greg Humphrey, James Gaffney, Jeremiah J Minich, Alexey V Melnik, Jakob Herschend, Jeff DeReus, Austin Durant, Rachel J Dutton, Mahdieh Khosroheidari, Clifford Green, Ricardo da Silva, Pieter C Dorrestein, Rob Knight
From Sample to Multi-Omics Conclusions in under 48 Hours. mSystems 1 (2) (2016)
Se Jin Song, Amnon Amir, Jessica L Metcalf, Katherine R Amato, Zhenjiang Zech Xu, Greg Humphrey, Rob Knight
Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies. mSystems 1 (3) (2016)

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Publication Activity (10 Years)

Top Topics

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Se Jin Song