Amy D Willis

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 18

Top Venues

Science advances

bioRxiv : the preprint server for biology

Biostatistics (Oxford, England)

Research square

University of Washington

Cornell University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Washington Jul 01 2017

United States

Assistant Professor :: Biostatistics

Education History

Cornell University Aug 01 2012 - May 20 2017

United States

PHD :: Statistical Science

Cornell University Aug 01 2012 - Jan 01 2015

United States

MSC :: Department of Statistics

Australian National University Feb 01 2008 - Dec 01 2011

Australia

BSC

Publications

Minsik Kim, Raymond C Parrish, Viral S Shah, Matthew Ross, Juwan Cormier, Aribah Baig, Ching-Ying Huang, Laura N Brenner, Isabel Neuringer, Katrine Whiteson, J Kirk Harris, Amy D Willis, Peggy S Lai
Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies. Research square (2024)
Minsik Kim, Raymond C Parrish Ii, Viral S Shah, Matthew Ross, Juwan Cormier, Aribah Baig, Ching-Ying Huang, Laura N Brenner, Isabel Neuringer, Katrine Whiteson, J Kirk Harris, Amy D Willis, Peggy S Lai
Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies. Research square (2024)
Evan Kiefl, Ozcan C Esen, Samuel E Miller, Kourtney L Kroll, Amy D Willis, Michael S Rappé, Tao Pan, A Murat Eren
Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution. Science advances 9 (8) (2023)
Sarah Teichman, Michael D Lee, Amy D Willis
Analyzing microbial evolution through gene and genome phylogenies. bioRxiv : the preprint server for biology (2023)
Pauline Trinh, David S Clausen, Amy D Willis
happi: a hierarchical approach to pangenomics inference. Genome biology 24 (1) (2023)
Evan Kiefl, Ozcan C Esen, Samuel E Miller, Kourtney L Kroll, Amy D Willis, Michael S Rappé, Tao Pan, A Murat Eren
Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution. Science advances 9 (8) (2023)
Iva A Veseli, Yiqun T Chen, Matthew S Schechter, Chiara Vanni, Emily C Fogarty, Andrea R Watson, Bana Jabri, Ran Blekhman, Amy D Willis, Michael K Yu, Antonio Fernandez-Guerra, Jessika Füssel, A Murat Eren
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress. bioRxiv : the preprint server for biology (2023)
Sarah Teichman, Michael D Lee, Amy D Willis
Analyzing microbial evolution through gene and genome phylogenies. Biostatistics (Oxford, England) (2023)
Evan Kiefl, Ozcan C Esen, Samuel E Miller, Kourtney L Kroll, Amy D Willis, Michael S Rappé, Tao Pan, A Murat Eren
Structure-informed microbial population genetics elucidate selective pressures that shape protein evolution. Science advances 9 (8) (2023)
Pauline Trinh, Marilyn C Roberts, Peter M Rabinowitz, Amy D Willis
Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study. bioRxiv : the preprint server for biology (2023)
David S Clausen, Amy D Willis
Evaluating replicability in microbiome data. Biostatistics (Oxford, England) 23 (4) (2022)
Brian D Williamson, James P Hughes, Amy D Willis
A multiview model for relative and absolute microbial abundances. Biometrics (2021)
Emily Kuehn, David S Clausen, Ryan W Null, Bria M Metzger, Amy D Willis, B Duygu Özpolat
Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii. Journal of experimental zoology. Part B, Molecular and developmental evolution (2021)
A Murat Eren, Evan Kiefl, Alon Shaiber, Iva A Veseli, Samuel E Miller, Matthew S Schechter, Isaac Fink, Jessica N Pan, Mahmoud Yousef, Emily C Fogarty, Florian Trigodet, Andrea R Watson, Özcan C Esen, Ryan M Moore, Quentin Clayssen, Michael D Lee, Veronika Kivenson, Elaina D Graham, Bryan D Merrill, Antti Karkman, Daniel Blankenberg, John M Eppley, Andreas Sjödin, Jarrod J Scott, Xabier Vázquez-Campos, Luke J McKay, Elizabeth A McDaniel, Sarah L R Stevens, Rika E Anderson, Jessika Fuessel, Antonio Fernandez-Guerra, Lois Maignien, Tom O Delmont, Amy D Willis
Community-led, integrated, reproducible multi-omics with anvi'o. Nature microbiology 6 (1) (2021)
Samuel Schwartz Minot, Amy D Willis
Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease. Microbiome 7 (1) (2019)
Amy D Willis
Rigorous Statistical Methods for Rigorous Microbiome Science. mSystems 4 (3) (2019)
Michael R McLaren, Amy D Willis, Benjamin J Callahan
Consistent and correctable bias in metagenomic sequencing experiments. eLife 8 (2019)
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric John Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodriguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan P Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo-Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine A Lozupone, Massoud Maher, Clarisse A Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima R Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R Rivers, Michael Scott Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin Johan Jozias van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature biotechnology 37 (8) (2019)

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Publication Activity (10 Years)

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Amy D Willis