Peter J Turnbaugh (Peter Turnbaugh)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 47

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Nature microbiology

eLife

University of California San Francisco

Washington University in Saint Louis School of Medicine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California San Francisco Sep 01 2014

United States

Assistant Professor :: Microbiology & Immunology

Harvard University Jan 01 2010 - Aug 31 2014

United States

Bauer Fellow :: Center for Systems Biology

Education History

Washington University in Saint Louis School of Medicine Jul 01 2004 - May 15 2009

United States

PHD :: Center for Genome Sciences

Publications

Erika L Cyphert, Chongshan Liu, Angie L Morales, Jacob C Nixon, Emily Blackford, Matthew Garcia, Nicolas Cevallos, Peter J Turnbaugh, Ilana L Brito, Sarah L Booth, Christopher J Hernandez
Effects of long-term high dose aspartame on body mass, bone strength, femoral geometry, and microbiota composition in a young and aged cohort of male and female mice. bioRxiv : the preprint server for biology (2024)
Erika L Cyphert, Chongshan Liu, Angie L Morales, Jacob C Nixon, Emily Blackford, Matthew Garcia, Nicolas Cevallos, Peter J Turnbaugh, Ilana L Brito, Sarah L Booth, Christopher J Hernandez
Effects of long-term high dose aspartame on body mass, bone strength, femoral geometry, and microbiota composition in a young and aged cohort of male and female mice. bioRxiv : the preprint server for biology (2024)
Cecilia Noecker, Peter J Turnbaugh
Emerging tools and best practices for studying gut microbial community metabolism. Nature metabolism 6 (7) (2024)
Cecilia Noecker, Peter J Turnbaugh
Emerging tools and best practices for studying gut microbial community metabolism. Nature metabolism 6 (7) (2024)
Cecilia Noecker, Peter J Turnbaugh
Emerging tools and best practices for studying gut microbial community metabolism. Nature metabolism (2024)
Sorbarikor Piawah, Than S Kyaw, Kai Trepka, Anita L Stewart, Rosa V Mora, Dalila Stanfield, Kendall Levine, Erin Lynn Van Blarigan, Alan Venook, Peter J Turnbaugh, Tung Nguyen, Chloe E Atreya
Associations between the Gut Microbiota, Race, and Ethnicity of Patients with Colorectal Cancer: A Pilot and Feasibility Study. Cancers 15 (18) (2023)
Adam Abate, Xiangpeng Li, Linfeng Xu, Benjamin Demaree, Cecilia Noecker, Jordan Bisanz, Daniel Weisgerber, Cyrus Modavi, Peter J Turnbaugh
Microbiome single cell atlases generated with a commercial instrument. Research square (2023)
Annamarie E Bustion, Renuka R Nayak, Ayushi Agrawal, Peter J Turnbaugh, Katherine S Pollard
SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. eLife 12 (2023)
Margaret Alexander, Vaibhav Upadhyay, Rachel Rock, Lorenzo Ramirez, Patrycja Puchalska, Diego Orellana, Qi Yan Ang, Jessie A Turnbaugh, Yuan Tian, Darren Dumlao, Renuka Nayak, Andrew D Patterson, John C Newman, Peter A Crawford, Peter J Turnbaugh
A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity. bioRxiv : the preprint server for biology (2023)
Xiangpeng Li, Linfeng Xu, Benjamin Demaree, Cecilia Noecker, Jordan E Bisanz, Daniel W Weisgerber, Cyrus Modavi, Peter J Turnbaugh, Adam R Abate
Microbiome single cell atlases generated with a commercial instrument. bioRxiv : the preprint server for biology (2023)
Lindsey M Pieper, Peter Spanogiannopoulos, Regan F Volk, Carson J Miller, Aaron T Wright, Peter J Turnbaugh
The global anaerobic metabolism regulator fnr is necessary for the degradation of food dyes and drugs by Escherichia coli . mBio (2023)
Veronica Escalante, Renuka R Nayak, Cecilia Noecker, Joel Babdor, Matthew Spitzer, Adam M Deutschbauer, Peter J Turnbaugh
Simvastatin induces human gut bacterial cell surface genes. Molecular microbiology (2023)
Rachel R Rock, Peter J Turnbaugh
Forging the microbiome to help us live long and prosper. PLoS biology 21 (4) (2023)
Cecilia Noecker, Juan Sanchez, Jordan E Bisanz, Veronica Escalante, Margaret Alexander, Kai Trepka, Almut Heinken, Yuanyuan Liu, Dylan Dodd, Ines Thiele, Brian C DeFelice, Peter J Turnbaugh
Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta. PLoS biology 21 (5) (2023)
Vaibhav Upadhyay, Rahul K Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, Renuka G Kumar, Victoria Wong Murray, Cecilia Noecker, Jordan E Bisanz, Yulin Hswen, Connie W Y Ha, Bharath Sreekumar, Irene P Chen, Susan V Lynch, Melanie Ott, Sulggi Lee, Peter J Turnbaugh
Mild SARS-CoV-2 infection results in long-lasting microbiota instability. mBio (2023)
Peter Spanogiannopoulos, Than S Kyaw, Benjamin G Horst, Patrick H Bradley, Joyce V Lee, Jonathan Melamed, Ysabella Noelle Amora Malig, Kathy N Lam, Daryll Gempis, Moriah Sandy, Wesley Kidder, Erin L Van Blarigan, Chloe E Atreya, Alan Venook, Roy R Gerona, Andrei Goga, Katherine S Pollard, Peter J Turnbaugh
Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism. Nature microbiology 7 (10) (2022)
Donggi Paik, Lina Yao, Yancong Zhang, Sena Bae, Gabriel D D'Agostino, Minghao Zhang, Eunha Kim, Eric A Franzosa, Julian Avila Pacheco, Jordan E Bisanz, Christopher K Rakowski, Hera Vlamakis, Ramnik J Xavier, Peter J Turnbaugh, Randy S Longman, Michael R Krout, Andrew T Chan, Fraydoon Rastinejad, Curtis Huttenhower, Jun R Huh, A Sloan Devlin
Human gut bacteria produce Τ Η 17-modulating bile acid metabolites. Nature 603 (7903) (2022)
Xueyang Dong, Ben G H Guthrie, Margaret Alexander, Cecilia Noecker, Lorenzo Ramirez, Nathaniel R Glasser, Peter J Turnbaugh, Emily P Balskus
Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators. Nature communications 13 (1) (2022)
Xueyang Dong, Ben G H Guthrie, Margaret Alexander, Cecilia Noecker, Lorenzo Ramirez, Nathaniel R Glasser, Peter J Turnbaugh, Emily P Balskus
Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators. Nature communications 13 (1) (2022)
Xueyang Dong, Ben G H Guthrie, Margaret Alexander, Cecilia Noecker, Lorenzo Ramirez, Nathaniel R Glasser, Peter J Turnbaugh, Emily P Balskus
Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators. Nature communications 13 (1) (2022)
Vaibhav Upadhyay, Peter J Turnbaugh
nicX-ing bad habits with your microbial friends. Nature metabolism 4 (11) (2022)
Vaibhav Upadhyay, Rahul Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, G Renuka Kumar, Victoria Wong Murray, Cecilia Noecker, Jordan E Bisanz, Yulin Hswen, Connie Ha, Bharat Sreekumar, Irene P Chen, Susan V Lynch, Melanie Ott, Sulggi Lee, Peter J Turnbaugh
Mild SARS-CoV-2 infection results in long-lasting microbiota instability. bioRxiv : the preprint server for biology (2022)
Andrew C Tolonen, Nicholas Beauchemin, Charlie Bayne, Lingyao Li, Jie Tan, Jackson Lee, Brian M Meehan, Jeffrey Meisner, Yves Millet, Gabrielle LeBlanc, Robert Kottler, Erdmann Rapp, Chris Murphy, Peter J Turnbaugh, Geoffrey von Maltzahn, Christopher M Liu, Johan E T van Hylckama Vlieg
Synthetic glycans control gut microbiome structure and mitigate colitis in mice. Nature communications 13 (1) (2022)
Christine A Olson, Peter J Turnbaugh
Designed secretion deters microbiome depletion. Nature microbiology 7 (6) (2022)
Xueyang Dong, Ben G H Guthrie, Margaret Alexander, Cecilia Noecker, Lorenzo Ramirez, Nathaniel R Glasser, Peter J Turnbaugh, Emily P Balskus
Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators. Nature communications 13 (1) (2022)
Than S Kyaw, Peter J Turnbaugh
Tiny Gatekeepers: Microbial Control of Host Drug Transporters. Clinical pharmacology and therapeutics 112 (3) (2022)
Xueyang Dong, Ben G H Guthrie, Margaret Alexander, Cecilia Noecker, Lorenzo Ramirez, Nathaniel R Glasser, Peter J Turnbaugh, Emily P Balskus
Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators. Nature communications 13 (1) (2022)
Xueyang Dong, Ben G H Guthrie, Margaret Alexander, Cecilia Noecker, Lorenzo Ramirez, Nathaniel R Glasser, Peter J Turnbaugh, Emily P Balskus
Genetic manipulation of the human gut bacterium Eggerthella lenta reveals a widespread family of transcriptional regulators. Nature communications 13 (1) (2022)
Vaibhav Upadhyay, Rahul Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, G Renuka Kumar, Victoria Wong Murray, Cecilia Noecker, Jordan E Bisanz, Yulin Hswen, Connie Ha, Bharat Sreekumar, Irene P Chen, Susan V Lynch, Melanie Ott, Sulggi Lee, Peter J Turnbaugh
Mild SARS-CoV-2 infection results in long-lasting microbiota instability. bioRxiv : the preprint server for biology (2022)
Margaret Alexander, Peter J Turnbaugh
Stressed-out gut bacteria are pterin up gut inflammation. Nature microbiology 5 (11) (2021)
Anne-Katrin Pröbstel, Xiaoyuan Zhou, Ryan Baumann, Sven Wischnewski, Michael Kutza, Olga L Rojas, Katrin Sellrie, Antje Bischof, Kicheol Kim, Akshaya Ramesh, Ravi Dandekar, Ariele L Greenfield, Ryan D Schubert, Jordan E Bisanz, Stephanie Vistnes, Khashayar Khaleghi, James Landefeld, Gina Kirkish, Friederike Liesche-Starnecker, Valeria Ramaglia, Sneha Singh, Edwina B Tran, Patrick Barba, Kelsey C Zorn, Johanna Oechtering, Karin Forsberg, Lawrence R Shiow, Roland G Henry, Jennifer Graves, Bruce A C Cree, Stephen L Hauser, Jens Kuhle, Jeffrey Marc Gelfand, Peter M Andersen, Jürgen Schlegel, Peter J Turnbaugh, Peter H Seeberger, Jennifer L Gommerman, Michael R Wilson, Lucas Schirmer, Sergio E Baranzini
Gut microbiota-specific IgA+ B cells traffic to the CNS in active multiple sclerosis. Science immunology 5 (53) (2021)
Qi Yan Ang, Diana L Alba, Vaibhav Upadhyay, Jordan E Bisanz, Jingwei Cai, Ho Lim Lee, Eliseo Barajas, Grace Wei, Cecilia Noecker, Andrew D Patterson, Suneil K Koliwad, Peter J Turnbaugh
The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health. eLife 10 (2021)
Reiner Jumpertz von Schwartzenberg, Jordan E Bisanz, Svetlana Lyalina, Peter Spanogiannopoulos, Qi Yan Ang, Jingwei Cai, Sophia Dickmann, Marie Friedrich, Su-Yang Liu, Stephanie L Collins, Danielle Ingebrigtsen, Steve Miller, Jessie A Turnbaugh, Andrew D Patterson, Katherine S Pollard, Knut Mai, Joachim Spranger, Peter J Turnbaugh
Caloric restriction disrupts the microbiota and colonization resistance. Nature 595 (7866) (2021)
Vayu M Rekdal, Paola Nol Bernadino, Michael U Luescher, Sina Kiamehr, Chip Le, Jordan E Bisanz, Peter J Turnbaugh, Elizabeth N Bess, Emily P Balskus
A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols. eLife 9 (2020)
Kevin Man, Christopher Bowman, Kristina N Braverman, Veronica Escalante, Yuan Tian, Jordan E Bisanz, Kirthana Ganeshan, Biao Wang, Andrew D Patterson, James R Bayrer, Peter J Turnbaugh, Ajay Chawla
A thermogenic fat-epithelium cell axis regulates intestinal disease tolerance. Proceedings of the National Academy of Sciences of the United States of America 117 (50) (2020)
Alessio Basolo, Maximilian Hohenadel, Qi Yan Ang, Paolo Piaggi, Sascha Heinitz, Mary Walter, Peter Walter, Shannon Parrington, Donovan D Trinidad, Reiner Jumpertz von Schwartzenberg, Peter J Turnbaugh, Jonathan Krakoff
Effects of underfeeding and oral vancomycin on gut microbiome and nutrient absorption in humans. Nature medicine 26 (4) (2020)
Ling Zou, Peter Spanogiannopoulos, Lindsey M Pieper, Huan-Chieh Chien, Wenlong Cai, Natalia Khuri, Joshua Pottel, Bianca Vora, Zhanglin Ni, Eleftheria Tsakalozou, Wenjun Zhang, Brian K Shoichet, Kathleen M Giacomini, Peter J Turnbaugh
Bacterial metabolism rescues the inhibition of intestinal drug absorption by food and drug additives. Proceedings of the National Academy of Sciences of the United States of America 117 (27) (2020)
Jose U Scher, Renuka R Nayak, Carles Ubeda, Peter J Turnbaugh, Steven B Abramson
Pharmacomicrobiomics in inflammatory arthritis: gut microbiome as modulator of therapeutic response. Nature reviews. Rheumatology 16 (5) (2020)
Elizabeth N Bess, Jordan E Bisanz, Fauna Yarza, Annamarie E Bustion, Barry E Rich, Xingnan Li, Seiya Kitamura, Emily Waligurski, Qi Yan Ang, Diana L Alba, Peter Spanogiannopoulos, Stephen Nayfach, Suneil K Koliwad, Dennis W Wolan, Adrian A Franke, Peter J Turnbaugh
Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria. Nature microbiology 5 (1) (2019)
Vayu M Rekdal, Elizabeth N Bess, Jordan E Bisanz, Peter J Turnbaugh, Emily P Balskus
Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism. Science (New York, N.Y.) 364 (6445) (2019)
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric John Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodriguez, John Chase, Emily K Cope, Ricardo Da Silva, Christian Diener, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Sean M Gibbons, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan P Holmes, Hannes Holste, Curtis Huttenhower, Gavin A Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin D Kaehler, Kyo-Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan G I Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine A Lozupone, Massoud Maher, Clarisse A Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie T Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima R Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam R Rivers, Michael Scott Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin Johan Jozias van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Charles H D Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature biotechnology 37 (8) (2019)
Rachel N Carmody, Jordan E Bisanz, Benjamin P Bowen, Corinne F Maurice, Svetlana Lyalina, Katherine B Louie, Daniel G C Treen, Katia S Chadaideh, Vayu Maini Rekdal, Elizabeth N Bess, Peter Spanogiannopoulos, Qi Yan Ang, Kylynda C Bauer, Thomas W Balon, Katherine S Pollard, Trent R Northen, Peter J Turnbaugh
Cooking shapes the structure and function of the gut microbiome. Nature microbiology 4 (12) (2019)
Aspen T Reese, Tyler R Kartzinel, Brianna L Petrone, Peter J Turnbaugh, Robert M Pringle, Lawrence A David
Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept. mSystems 4 (5) (2019)
Nitzan Koppel, Jordan E Bisanz, Maria-Eirini Pandelia, Peter J Turnbaugh, Emily P Balskus
Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins. eLife 7 (2018)
Jordan E Bisanz, Peter Spanogiannopoulos, Lindsey M Pieper, Annamarie E Bustion, Peter J Turnbaugh
How to Determine the Role of the Microbiome in Drug Disposition. Drug metabolism and disposition: the biological fate of chemicals 46 (11) (2018)
Peter J Turnbaugh
Making Millennial Medicine More Meta. mSystems 3 (2) (2018)
Emily P Balskus, Peter J Turnbaugh, Dennis W Wolan
Announcement of 2019 Keystone Symposia Conference: "Microbiome: Chemical Mechanisms and Biological Consequences". mSystems 3 (4) (2018)

Peter J Turnbaugh (Peter Turnbaugh)

Publication Activity (10 Years)

Top Topics

Top Venues