Steffen Klamt

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 22

Top Topics

Escherichia Coli

Network Analysis

Wastewater Treatment

Gene Expression

Top Venues

PLoS computational biology

Nature communications

BMC bioinformatics

Biotechnology and bioengineering

This page only lists publications with an associated author ORCID identifier.

Publications

Helena Schulz-Mirbach, Jan Lukas Krüsemann, Theofania Andreadaki, Jana Natalie Nerlich, Eleni Mavrothalassiti, Simon Boecker, Philipp Schneider, Moritz Weresow, Omar Abdelwahab, Nicole Paczia, Beau Dronsella, Tobias J Erb, Arren Bar-Even, Steffen Klamt, Steffen N Lindner
Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules. Nature communications 15 (1) (2024)
Helena Schulz-Mirbach, Jan Lukas Krüsemann, Theofania Andreadaki, Jana Natalie Nerlich, Eleni Mavrothalassiti, Simon Boecker, Philipp Schneider, Moritz Weresow, Omar Abdelwahab, Nicole Paczia, Beau Dronsella, Tobias J Erb, Arren Bar-Even, Steffen Klamt, Steffen N Lindner
Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules. Nature communications 15 (1) (2024)
Helena Schulz-Mirbach, Jan Lukas Krüsemann, Theofania Andreadaki, Jana Natalie Nerlich, Eleni Mavrothalassiti, Simon Boecker, Philipp Schneider, Moritz Weresow, Omar Abdelwahab, Nicole Paczia, Beau Dronsella, Tobias J Erb, Arren Bar-Even, Steffen Klamt, Steffen N Lindner
Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules. Nature communications 15 (1) (2024)
Sebastián Espinel-Ríos, Bruno Morabito, Johannes Pohlodek, Katja Bettenbrock, Steffen Klamt, Rolf Findeisen
Toward a modeling, optimization, and predictive control framework for fed-batch metabolic cybergenetics. Biotechnology and bioengineering (2023)
Pavlos Stephanos Bekiaris, Steffen Klamt
Network-wide thermodynamic constraints shape NAD(P)H cofactor specificity of biochemical reactions. Nature communications 14 (1) (2023)
Simon Boecker, Giulia Slaviero, Thorben Schramm, Witold Szymanski, Ralf Steuer, Hannes Link, Steffen Klamt
Deciphering the physiological response of Escherichia coli under high ATP demand. Molecular systems biology 17 (12) (2022)
Steffen Klamt, Axel von Kamp
Analyzing and Resolving Infeasibility in Flux Balance Analysis of Metabolic Networks. Metabolites 12 (7) (2022)
Philipp Schneider, Pavlos Stephanos Bekiaris, Axel von Kamp, Steffen Klamt
StrainDesign: a comprehensive Python package for computational design of metabolic networks. Bioinformatics (Oxford, England) 38 (21) (2022)
Gerrich Behrendt, Jonas Frohwitter, Maria Vlachonikolou, Steffen Klamt, Katja Bettenbrock
Zymo-Parts: A Golden Gate Modular Cloning Toolbox for Heterologous Gene Expression in Zymomonas mobilis . ACS synthetic biology 11 (11) (2022)
Simon Boecker, Björn-Johannes Harder, Regina Kutscha, Stefan Pflügl, Steffen Klamt
Increasing ATP turnover boosts productivity of 2,3-butanediol synthesis in Escherichia coli. Microbial cell factories 20 (1) (2021)
Pavlos Stephanos Bekiaris, Steffen Klamt
Designing microbial communities to maximize the thermodynamic driving force for the production of chemicals. PLoS computational biology 17 (6) (2021)
Philipp Schneider, Radhakrishnan Mahadevan, Steffen Klamt
Systematizing the different notions of growth-coupled product synthesis and a single framework for computing corresponding strain designs. Biotechnology journal 16 (12) (2021)
Ahmed Zahoor, Katrin Messerschmidt, Simon Boecker, Steffen Klamt
ATPase-based implementation of enforced ATP wasting in Saccharomyces cerevisiae for improved ethanol production. Biotechnology for biofuels 13 (1) (2020)
Steffen Klamt, Radhakrishnan Mahadevan, Axel von Kamp
Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC bioinformatics 21 (1) (2020)
Philipp Schneider, Axel von Kamp, Steffen Klamt
An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets. PLoS computational biology 16 (7) (2020)
Christian Lieven, Moritz Emanuel Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary A King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinglu, Gregory L Medlock, Jonathan M Monk, Jens B Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran Raosaheb Patil, Mark G Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
MEMOTE for standardized genome-scale metabolic model testing. Nature biotechnology 38 (3) (2020)
Axel von Kamp, Steffen Klamt
MEMO: A Method for Computing Metabolic Modules for Cell-Free Production Systems. ACS synthetic biology 9 (3) (2020)
Pavlos Stephanos Bekiaris, Steffen Klamt
Automatic construction of metabolic models with enzyme constraints. BMC bioinformatics 21 (1) (2020)
Sabine Koch, Fabian Kohrs, Patrick Lahmann, Thomas Bissinger, Stefan Wendschuh, Dirk Benndorf, Udo Reichl, Steffen Klamt
RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion. PLoS computational biology 15 (2) (2019)
Simon Boecker, Ahmed Zahoor, Thorben Schramm, Hannes Link, Steffen Klamt
Broadening the Scope of Enforced ATP Wasting as a Tool for Metabolic Engineering in Escherichia coli. Biotechnology journal 14 (9) (2019)
Oliver Hädicke, Axel von Kamp, Timur Aydogan, Steffen Klamt
OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli. PLoS computational biology 14 (9) (2018)
Björn-Johannes Harder, Katja Bettenbrock, Steffen Klamt
Temperature-dependent dynamic control of the TCA cycle increases volumetric productivity of itaconic acid production by Escherichia coli. Biotechnology and bioengineering 115 (1) (2017)