Hyun Uk Kim

Technical University of Denmark CWIS ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 31

Top Venues

Genome biology

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Nature biotechnology

Korea Advanced Institute of Science and Technology

Korea Advanced Institute of Science and Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Korea Advanced Institute of Science and Technology Feb 12 2018

South Korea

Assistant Professor :: Department of Chemical and Biomolecular Engineering

Korea Advanced Institute of Science and Technology

South Korea

Research Assistant Professor / Research Fellow :: BioInformatics Research Center

Technical University of Denmark - Dec 31 2016

Denmark

Visiting Senior Researcher :: Novo Nordisk Foundation Center for Biosustainability

Korea Advanced Institute of Science and Technology

South Korea

Postdoctoral Researcher :: BioInformatics Research Center

Education History

Korea Advanced Institute of Science and Technology

South Korea

PHD :: Chemical & Biomolecular Engineering

Korea Advanced Institute of Science and Technology

South Korea

MSC :: Chemical & Biomolecular Engineering

Yonsei University

South Korea

BSC :: Biotechnology

Publications

GaRyoung Lee, Sang Mi Lee, Sungyoung Lee, Chang Wook Jeong, Hyojin Song, Sang Yup Lee, Hongseok Yun, Youngil Koh, Hyun Uk Kim
Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. Genome biology 25 (1) (2024)
GaRyoung Lee, Sang Mi Lee, Sungyoung Lee, Chang Wook Jeong, Hyojin Song, Sang Yup Lee, Hongseok Yun, Youngil Koh, Hyun Uk Kim
Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. Genome biology 25 (1) (2024)
GaRyoung Lee, Sang Mi Lee, Sungyoung Lee, Chang Wook Jeong, Hyojin Song, Sang Yup Lee, Hongseok Yun, Youngil Koh, Hyun Uk Kim
Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. Genome biology 25 (1) (2024)
GaRyoung Lee, Sang Mi Lee, Sungyoung Lee, Chang Wook Jeong, Hyojin Song, Sang Yup Lee, Hongseok Yun, Youngil Koh, Hyun Uk Kim
Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. Genome biology 25 (1) (2024)
GaRyoung Lee, Sang Mi Lee, Sungyoung Lee, Chang Wook Jeong, Hyojin Song, Sang Yup Lee, Hongseok Yun, Youngil Koh, Hyun Uk Kim
Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. Genome biology 25 (1) (2024)
GaRyoung Lee, Sang Mi Lee, Sungyoung Lee, Chang Wook Jeong, Hyojin Song, Sang Yup Lee, Hongseok Yun, Youngil Koh, Hyun Uk Kim
Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. Genome biology 25 (1) (2024)
GaRyoung Lee, Sang Mi Lee, Sungyoung Lee, Chang Wook Jeong, Hyojin Song, Sang Yup Lee, Hongseok Yun, Youngil Koh, Hyun Uk Kim
Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. Genome biology 25 (1) (2024)
Jae Sung Cho, Dongsoo Yang, Cindy Pricilia Surya Prabowo, Mohammad Rifqi Ghiffary, Taehee Han, Kyeong Rok Choi, Cheon Woo Moon, Hengrui Zhou, Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs. Nature communications 14 (1) (2023)
Yeji Kim, Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Computational prediction of interactions between Paxlovid and prescription drugs. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Jae Sung Cho, Dongsoo Yang, Cindy Pricilia Surya Prabowo, Mohammad Rifqi Ghiffary, Taehee Han, Kyeong Rok Choi, Cheon Woo Moon, Hengrui Zhou, Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs. Nature communications 14 (1) (2023)
Jae Sung Cho, Dongsoo Yang, Cindy Pricilia Surya Prabowo, Mohammad Rifqi Ghiffary, Taehee Han, Kyeong Rok Choi, Cheon Woo Moon, Hengrui Zhou, Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs. Nature communications 14 (1) (2023)
Jae Sung Cho, Dongsoo Yang, Cindy Pricilia Surya Prabowo, Mohammad Rifqi Ghiffary, Taehee Han, Kyeong Rok Choi, Cheon Woo Moon, Hengrui Zhou, Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs. Nature communications 14 (1) (2023)
Yeji Kim, Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Computational prediction of interactions between Paxlovid and prescription drugs. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Michael W Mullowney, Katherine R Duncan, Somayah S Elsayed, Neha Garg, Justin Johan Jozias van der Hooft, Nathaniel I Martin, David Meijer, Barbara R Terlouw, Friederike Biermann, Kai Blin, Janani Durairaj, Marina Gorostiola González, Eric J N Helfrich, Florian Huber, Stefan Leopold-Messer, Kohulan Rajan, Tristan de Rond, Jeffrey A van Santen, Maria Sorokina, Marcy J Balunas, Mehdi A Beniddir, Doris A van Bergeijk, Laura M Carroll, Chase M Clark, Djork-Arné Clevert, Chris A Dejong, Chao Du, Scarlet Ferrinho, Francesca Grisoni, Albert Hofstetter, Willem Jespers, Olga V Kalinina, Satria A Kautsar, Hyun Woo Kim, Tiago F Leao, Joleen Masschelein, Evan R Rees, Raphael Reher, Daniel Reker, Philippe Schwaller, Marwin Segler, Michael A Skinnider, Allison S Walker, Egon L Wilighagen, Barbara Zdrazil, Nadine Ziemert, Rebecca J M Goss, Pierre Guyomard, Andrea Volkamer, William H Gerwick, Hyun Uk Kim, Daniel Krug, Gilles P van Wezel, Gerard van Westen, Anna Katharina Herta Hirsch, Roger G Linington, Serina L Robinson, Marnix H Medema
Artificial intelligence for natural product drug discovery. Nature reviews. Drug discovery (2023)
Jae Sung Cho, Dongsoo Yang, Cindy Pricilia Surya Prabowo, Mohammad Rifqi Ghiffary, Taehee Han, Kyeong Rok Choi, Cheon Woo Moon, Hengrui Zhou, Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs. Nature communications 14 (1) (2023)
Yesol Baek, Seungmee Lee, Jemin Son, Taek Lee, Jong-Min Oh, Sang Hun Lee, Hyun Uk Kim, Sang Woo Seo, Si Jae Park, Hah Young Yoo, Chulhwan Park
Efficient Production of Naringin Acetate with Different Acyl Donors via Enzymatic Transesterification by Lipases. International journal of environmental research and public health 19 (5) (2022)
Min Kyung Cho, Byung Tae Lee, Hyun Uk Kim, Min-Kyu Oh
Systems metabolic engineering of Streptomyces venezuelae for the enhanced production of pikromycin. Biotechnology and bioengineering 119 (8) (2022)
Dong In Kim, Tong Un Chae, Hyun Uk Kim, Woo Dae Jang, Sang Yup Lee
Microbial production of multiple short-chain primary amines via retrobiosynthesis. Nature communications 12 (1) (2021)
Junhyeok Jeon, Seongmo Kang, Hyun Uk Kim
Predicting biochemical and physiological effects of natural products from molecular structures using machine learning. Natural product reports 38 (11) (2021)
Yeji Kim, Jae Yong Ryu, Hyun Uk Kim, Woo Dae Jang, Sang Yup Lee
A deep learning approach to evaluate the feasibility of enzymatic reactions generated by retrobiosynthesis. Biotechnology journal 16 (5) (2021)
Jamin Koo, Kyucheol Choi, Peter Lee, Amanda Polley, Raghavendra Sumanth Pudupakam, Josephine Tsang, Elmer Fernandez, Enyang James Han, Stanley Park, Deanna Swartzfager, Nicholas Seah Xi Qi, Melody Jung, Mary Ocnean, Hyun Uk Kim, Sungwon Lim
Predicting Dynamic Clinical Outcomes of the Chemotherapy for Canine Lymphoma Patients Using a Machine Learning Model. Veterinary sciences 8 (12) (2021)
Sang Mi Lee, Hyun Uk Kim
Development of computational models using omics data for the identification of effective cancer metabolic biomarkers. Molecular omics 17 (6) (2021)
Christian Lieven, Moritz Emanuel Beber, Brett G Olivier, Frank T Bergmann, Meric Ataman, Parizad Babaei, Jennifer A Bartell, Lars M Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E Ebert, Janaka N Edirisinghe, José P Faria, Adam M Feist, Georgios Fengos, Ronan M T Fleming, Beatriz García-Jiménez, Vassily Hatzimanikatis, Wout van Helvoirt, Christopher S Henry, Henning Hermjakob, Markus J Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary A King, Steffen Klamt, Edda Klipp, Jasper J Koehorst, Matthias König, Meiyappan Lakshmanan, Dong-Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinglu, Gregory L Medlock, Jonathan M Monk, Jens B Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O Palsson, Jason A Papin, Kiran Raosaheb Patil, Mark G Poolman, Nathan D Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J Sánchez, Peter J Schaap, Rahuman S Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A H Wodke, Joana C Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang
MEMOTE for standardized genome-scale metabolic model testing. Nature biotechnology 38 (3) (2020)
Woo Dae Jang, Sang Mi Lee, Hyun Uk Kim, Sang Yup Lee
Systematic and Comparative Evaluation of Software Programs for Template-Based Modeling of Protein Structures. Biotechnology journal 15 (6) (2020)
Hyeokjo Gwon, Kitae Park, Soon-Chun Chung, Ryoung-Hee Kim, Jin Kyu Kang, Sang Min Ji, Nag-Jong Kim, Sunghaeng Lee, Jun-Hwan Ku, Eun Cheol Do, Sujin Park, Minsang Kim, Woo Yong Shim, Hong Soon Rhee, Jae-Young Kim, Jieun Kim, Tae Yong Kim, Yoshitaka Yamaguchi, Ryo Iwamuro, Shunsuke Saito, Gahee Kim, In-Sun Jung, Hyokeun Park, Chanhee Lee, Seungyeon Lee, Woo Sung Jeon, Woo Dae Jang, Hyun Uk Kim, Sang Yup Lee, Dongmin Im, Seok-Gwang Doo, Sang Yoon Lee, Hyun Chul Lee, Jin Hwan Park
A safe and sustainable bacterial cellulose nanofiber separator for lithium rechargeable batteries. Proceedings of the National Academy of Sciences of the United States of America 116 (39) (2019)
Woo Dae Jang, Tae Yong Kim, Hyun Uk Kim, Woo Yong Shim, Jae Yong Ryu, Jin Hwan Park, Sang Yup Lee
Genomic and metabolic analysis of Komagataeibacter xylinus DSM 2325 producing bacterial cellulose nanofiber. Biotechnology and bioengineering 116 (12) (2019)
Jae Yong Ryu, Hyun Uk Kim, Sang Yup Lee
Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers. Proceedings of the National Academy of Sciences of the United States of America 116 (28) (2019)
Omkar S Mohite, Tilmann Weber, Hyun Uk Kim, Sang Yup Lee
Genome-Scale Metabolic Reconstruction of Actinomycetes for Antibiotics Production. Biotechnology journal 14 (1) (2018)
Byoungjin Kim, Robert Binkley, Hyun Uk Kim, Sang Yup Lee
Metabolic engineering of Escherichia coli for the enhanced production of l-tyrosine. Biotechnology and bioengineering 115 (10) (2018)
Hyun Uk Kim, Jae Yong Ryu, Jong Ok Lee, Sang Yup Lee
A systems approach to traditional oriental medicine. Nature biotechnology 33 (3) (2016)
Sang Yup Lee, Hyun Uk Kim
Systems strategies for developing industrial microbial strains. Nature biotechnology 33 (10) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Hyun Uk Kim