Taekjip Ha

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 100

Top Venues

Nature communications

bioRxiv : the preprint server for biology

eLife

The journal of physical chemistry. B

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of California Berkeley Aug 15 1990 - Dec 31 1996

United States

PHD :: Physics

Seoul National University Mar 02 1986 - Feb 10 1990

South Korea

BSC :: Physics

Publications

Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers. eLife 12 (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D Search and Processive Nucleosome Translocations by RSC and ISW2 Chromatin Remodelers. bioRxiv : the preprint server for biology (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers. eLife 12 (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D Search and Processive Nucleosome Translocations by RSC and ISW2 Chromatin Remodelers. bioRxiv : the preprint server for biology (2024)
Myung Hyun Jo, Paul Meneses, Olivia Yang, Claudia C Carcamo, Sushil Pangeni, Taekjip Ha
Determination of single-molecule loading rate during mechanotransduction in cell adhesion. Science (New York, N.Y.) 383 (6689) (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D Search and Processive Nucleosome Translocations by RSC and ISW2 Chromatin Remodelers. bioRxiv : the preprint server for biology (2024)
Myung Hyun Jo, Paul Meneses, Olivia Yang, Claudia C Carcamo, Sushil Pangeni, Taekjip Ha
Determination of single-molecule loading rate during mechanotransduction in cell adhesion. Science (New York, N.Y.) 383 (6689) (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers. eLife 12 (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers. eLife 12 (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers. eLife 12 (2024)
Myung Hyun Jo, Paul Meneses, Olivia Yang, Claudia C Carcamo, Sushil Pangeni, Taekjip Ha
Determination of single-molecule loading rate during mechanotransduction in cell adhesion. Science (New York, N.Y.) 383 (6689) (2024)
Myung Hyun Jo, Paul Meneses, Olivia Yang, Claudia C Carcamo, Sushil Pangeni, Taekjip Ha
Determination of single-molecule loading rate during mechanotransduction in cell adhesion. Science (New York, N.Y.) 383 (6689) (2024)
Thuy T M Ngo, Bailey Liu, Feng Wang, Aakash Basu, Carl Wu, Taekjip Ha
Dependence of nucleosome mechanical stability on DNA mismatches. eLife 13 (2024)
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu Ashlee Feng, Maryam Yamadi, Matthew F Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
Dynamic 1D Search and Processive Nucleosome Translocations by RSC and ISW2 Chromatin Remodelers. bioRxiv : the preprint server for biology (2024)
Thuy T M Ngo, Bailey Liu, Feng Wang, Aakash Basu, Carl Wu, Taekjip Ha
Dependence of nucleosome mechanical stability on DNA mismatches. eLife 13 (2024)
Myung Hyun Jo, Paul Meneses, Olivia Yang, Claudia C Carcamo, Sushil Pangeni, Taekjip Ha
Determination of single-molecule loading rate during mechanotransduction in cell adhesion. Science (New York, N.Y.) 383 (6689) (2024)
Nils A Benning, Jacob Kæstel-Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting-Wei Liao, Jingzhou Hao, James M Berger, Nikos S Hatzakis, Taekjip Ha
Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67. The journal of physical chemistry. B 127 (9) (2023)
Sarah Clark, Jaba Mitra, Johannes Elferich, April Goehring, Jingpeng Ge, Taekjip Ha, Eric Gouaux
Single molecule studies of the native hair cell mechanosensory transduction complex. bioRxiv : the preprint server for biology (2023)
Ting-Wei Liao, Lin Huang, Timothy J Wilson, Laura R Ganser, David M J Lilley, Taekjip Ha
Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level. Nucleic acids research (2023)
Helena Hall-Thomsen, Shavier Small, Momcilo Gavrilov, Taekjip Ha, Rebecca Schulman, Pepijn Gerben Moerman
Directing Uphill Strand Displacement with an Engineered Superhelicase. ACS synthetic biology (2023)
Wesley J Yon, Joseph R Tran, Taekjip Ha, Yixian Zheng, Ross T A Pedersen
BuGZ exhibits guanine nucleotide exchange factor activity toward tubulin. bioRxiv : the preprint server for biology (2023)
Sangwoo Park, Giovanni B Brandani, Taekjip Ha, Gregory D Bowman
Bi-directional nucleosome sliding by the Chd1 chromatin remodeler integrates intrinsic sequence-dependent and ATP-dependent nucleosome positioning. Nucleic acids research (2023)
Ganesh Agam, Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose, Neharika Chamachi, Sang Yoon Chung, Timothy D Craggs, Marijn de Boer, Dina Grohmann, Taekjip Ha, Andreas Hartmann, Jelle Hendrix, Verena Hirschfeld, Christian G Hübner, Thorsten Hugel, Dominik Kammerer, Hyun-Seo Kang, Achillefs N Kapanidis, Georg Krainer, Kevin Kramm, Edward Anton Lemke, Eitan Lerner, Emmanuel Margeat, Kirsten Martens, Jens Michaelis, Jaba Mitra, Gabriel G Moya Muñoz, Robert B Quast, Nicole C Robb, Michael Sattler, Michael Schlierf, Jonathan Schneider, Tim Schröder, Anna Sefer, Piau Siong Tan, Johann Thurn, Philip Tinnefeld, John van Noort, Shimon Weiss, Nicolas Wendler, Niels Zijlstra, Anders Barth, Claus A M Seidel, Don C Lamb, Thorben Cordes
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature methods (2023)
Tyler H Ogunmowo, Haoyuan Jing, Sumana Raychaudhuri, Grant F Kusick, Yuuta Imoto, Shuo Li, Kie Itoh, Ye Ma, Haani Jafri, Matthew B Dalva, Edwin R Chapman, Taekjip Ha, Shigeki Watanabe, Jian Liu
Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis. Nature communications 14 (1) (2023)
Ganesh Agam, Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose, Neharika Chamachi, Sang Yoon Chung, Timothy D Craggs, Marijn de Boer, Dina Grohmann, Taekjip Ha, Andreas Hartmann, Jelle Hendrix, Verena Hirschfeld, Christian G Hübner, Thorsten Hugel, Dominik Kammerer, Hyun-Seo Kang, Achillefs N Kapanidis, Georg Krainer, Kevin Kramm, Edward Anton Lemke, Eitan Lerner, Emmanuel Margeat, Kirsten Martens, Jens Michaelis, Jaba Mitra, Gabriel G Moya Muñoz, Robert B Quast, Nicole C Robb, Michael Sattler, Michael Schlierf, Jonathan Schneider, Tim Schröder, Anna Sefer, Piau Siong Tan, Johann Thurn, Philip Tinnefeld, John van Noort, Shimon Weiss, Nicolas Wendler, Niels Zijlstra, Anders Barth, Claus A M Seidel, Don C Lamb, Thorben Cordes
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature methods (2023)
Sarah Clark, Jaba Mitra, Johannes Elferich, April Goehring, Jingpeng Ge, Taekjip Ha, Eric Gouaux
Single molecule studies of the native hair cell mechanosensory transduction complex. bioRxiv : the preprint server for biology (2023)
Roger S Zou, Yang Liu, Oscar E Reyes Gaido, Maximilian F Konig, Brian J Mog, Leo L Shen, Franklin Aviles-Vazquez, Alberto Marin-Gonzalez, Taekjip Ha
Improving the sensitivity of in vivo CRISPR off-target detection with DISCOVER-Seq. Nature methods (2023)
Sangwoo Park, Advait Athreya, Gustavo Ezequiel Carrizo, Nils A Benning, Michelle M Mitchener, Natarajan V Bhanu, Benjamin A Garcia, Bin Zhang, Tom W Muir, Erika L Pearce, Taekjip Ha
Electrostatic encoding of genome organization principles within single native nucleosomes. bioRxiv : the preprint server for biology (2023)
Tyler H Ogunmowo, Haoyuan Jing, Sumana Raychaudhuri, Grant F Kusick, Yuuta Imoto, Shuo Li, Kie Itoh, Ye Ma, Haani Jafri, Matthew B Dalva, Edwin R Chapman, Taekjip Ha, Shigeki Watanabe, Jian Liu
Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis. Nature communications 14 (1) (2023)
Tyler H Ogunmowo, Haoyuan Jing, Sumana Raychaudhuri, Grant F Kusick, Yuuta Imoto, Shuo Li, Kie Itoh, Ye Ma, Haani Jafri, Matthew B Dalva, Edwin R Chapman, Taekjip Ha, Shigeki Watanabe, Jian Liu
Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis. Nature communications 14 (1) (2023)
Nils A Benning, Jacob Kæstel-Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting-Wei Liao, Jingzhou Hao, James M Berger, Nikos S Hatzakis, Taekjip Ha
Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67. The journal of physical chemistry. B (2023)
Nils A Benning, Jacob Kæstel-Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting-Wei Liao, Jingzhou Hao, James M Berger, Nikos S Hatzakis, Taekjip Ha
Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67. The journal of physical chemistry. B 127 (9) (2023)
Sangwoo Park, Advait Athreya, Gustavo Ezequiel Carrizo, Nils A Benning, Michelle M Mitchener, Natarajan V Bhanu, Benjamin A Garcia, Bin Zhang, Tom W Muir, Erika L Pearce, Taekjip Ha
Electrostatic encoding of genome organization principles within single native nucleosomes. bioRxiv : the preprint server for biology (2023)
Sarah Clark, Jaba Mitra, Johannes Elferich, April Goehring, Jingpeng Ge, Taekjip Ha, Eric Gouaux
Single molecule studies of the native hair cell mechanosensory transduction complex. bioRxiv : the preprint server for biology (2023)
Rajashree A Deshpande, Alberto Marin-Gonzalez, Hannah K Barnes, Phillip R Woolley, Taekjip Ha, Tanya T Paull
Genome-wide analysis of DNA-PK-bound MRN cleavage products supports a sequential model of DSB repair pathway choice. Nature communications 14 (1) (2023)
Young-Hoon Kim, Nahye Kim, Ikenna Okafor, Sungchul Choi, Seonwoo Min, Joonsun Lee, Seung-Min Bae, Keunwoo Choi, Janice Choi, Vinayak Harihar, Youngho Kim, Jin-Soo Kim, Benjamin P Kleinstiver, Jungjoon K Lee, Taekjip Ha, Hyongbum Henry Kim
Sniper2L is a high-fidelity Cas9 variant with high activity. Nature chemical biology (2023)
Sangwoo Park, Advait Athreya, Gustavo Ezequiel Carrizo, Nils A Benning, Michelle M Mitchener, Natarajan V Bhanu, Benjamin A Garcia, Bin Zhang, Tom W Muir, Erika L Pearce, Taekjip Ha
Electrostatic encoding of genome organization principles within single native nucleosomes. bioRxiv : the preprint server for biology (2023)
Dmitriy Bobrovnikov, Monika A Makurath, Clara H Wolfe, Yann R Chemla, Taekjip Ha
Helicase Activity Modulation with On-Demand Light-Based Conformational Control. Journal of the American Chemical Society (2023)
Rachel S Helms, Alberto Marin-Gonzalez, Chirag H Patel, Im-Hong Sun, Jiayu Wen, Robert D Leone, Bridget Duvall, Run-Duo Gao, Taekjip Ha, Takashi Tsukamoto, Barbara S Slusher, Joel L Pomerantz, Jonathan D Powell
SIKs Regulate HDAC7 Stabilization and Cytokine Recall in Late-Stage T Cell Effector Differentiation. Journal of immunology (Baltimore, Md. : 1950) (2023)
Aman Y Husbands, Antje Feller, Vasudha Aggarwal, Courtney E Dresden, Ashton S Holub, Taekjip Ha, Marja C P Timmermans
The START domain potentiates HD-ZIPIII transcriptional activity. The Plant cell (2023)
Nils A Benning, Jacob Kæstel-Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting-Wei Liao, Jingzhou Hao, James M Berger, Nikos S Hatzakis, Taekjip Ha
Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67. The journal of physical chemistry. B 127 (9) (2023)
Nils A Benning, Jacob Kæstel-Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting-Wei Liao, Jingzhou Hao, James M Berger, Nikos S Hatzakis, Taekjip Ha
Dimensional Reduction for Single-Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67. The journal of physical chemistry. B 127 (9) (2023)
Ganesh Agam, Christian Gebhardt, Milana Popara, Rebecca Mächtel, Julian Folz, Benjamin Ambrose, Neharika Chamachi, Sang Yoon Chung, Timothy D Craggs, Marijn de Boer, Dina Grohmann, Taekjip Ha, Andreas Hartmann, Jelle Hendrix, Verena Hirschfeld, Christian G Hübner, Thorsten Hugel, Dominik Kammerer, Hyun-Seo Kang, Achillefs N Kapanidis, Georg Krainer, Kevin Kramm, Edward Anton Lemke, Eitan Lerner, Emmanuel Margeat, Kirsten Martens, Jens Michaelis, Jaba Mitra, Gabriel G Moya Muñoz, Robert B Quast, Nicole C Robb, Michael Sattler, Michael Schlierf, Jonathan Schneider, Tim Schröder, Anna Sefer, Piau Siong Tan, Johann Thurn, Philip Tinnefeld, John van Noort, Shimon Weiss, Nicolas Wendler, Niels Zijlstra, Anders Barth, Claus A M Seidel, Don C Lamb, Thorben Cordes
Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins. Nature methods (2023)
Sarah Clark, Jaba Mitra, Johannes Elferich, April Goehring, Jingpeng Ge, Taekjip Ha, Eric Gouaux
Single molecule studies of the native hair cell mechanosensory transduction complex. bioRxiv : the preprint server for biology (2023)
Mohammed Repon Khan, Xiling Yin, Sung-Ung Kang, Jaba Mitra, Hu Wang, Taekyung Ryu, Saurav Brahmachari, Senthilkumar S Karuppagounder, Yasuyoshi Kimura, Aanishaa Jhaldiyal, Hyun Hee Kim, Hao Gu, Rong Chen, Javier Redding-Ochoa, Juan Troncoso, Chan Hyun Na, Taekjip Ha, Valina L Dawson, Ted M Dawson
Enhanced mTORC1 signaling and protein synthesis in pathologic α-synuclein cellular and animal models of Parkinson's disease. Science translational medicine 15 (724) (2023)
Victor M Balcão, Aakash Basu, Basilio Cieza, Fernando P N Rossi, Carla Pereira, Marta Maria Duarte Carvalho Vila, João Carlos Setubal, Taekjip Ha, Aline Maria da Silva
<i>Pseudomonas</i>-tailed lytic phages: genome mechanical analysis and putative correlation with virion morphogenesis yield. Future microbiology 17 (2022)
Myung Hyun Jo, Jing Li, Valentin Jaumouillé, Yuxin Hao, Jessica Coppola, Jiabin Yan, Clare M Waterman, Timothy A Springer, Taekjip Ha
Single-molecule characterization of subtype-specific β1 integrin mechanics. Nature communications 13 (1) (2022)
Ikenna C Okafor, Taekjip Ha
Single Molecule FRET Analysis of CRISPR Cas9 Single Guide RNA Folding Dynamics. The journal of physical chemistry. B 127 (1) (2022)
Yanbo Wang, W Taylor Cottle, Haobo Wang, Momčilo Gavrilov, Roger S Zou, Minh-Tam Pham, Srinivasan Yegnasubramanian, Scott Bailey, Taekjip Ha
Achieving single nucleotide sensitivity in direct hybridization genome imaging. Nature communications 13 (1) (2022)
Andrew H Laszlo, Jonathan M Craig, Momčilo Gavrilov, Ramreddy Tippana, Ian C Nova, Jesse R Huang, Hwanhee C Kim, Sarah J Abell, Mallory deCampos-Stairiker, Jonathan W Mount, Jasmine L Bowman, Katherine S Baker, Hugh Higinbotham, Dmitriy Bobrovnikov, Taekjip Ha, Jens H Gundlach
Sequence-dependent mechanochemical coupling of helicase translocation and unwinding at single-nucleotide resolution. Proceedings of the National Academy of Sciences of the United States of America 119 (36) (2022)
Yanbo Wang, W Taylor Cottle, Haobo Wang, Momčilo Gavrilov, Roger S Zou, Minh-Tam Pham, Srinivasan Yegnasubramanian, Scott Bailey, Taekjip Ha
Achieving single nucleotide sensitivity in direct hybridization genome imaging. Nature communications 13 (1) (2022)
Liliam K Harada, Erica C Silva, Fernando P N Rossi, Basilio Cieza, Thais Jardim Oliveira, Carla Pereira, Geizecler Tomazetto, Bianca G Belline, Fábio Márcio Squina, Marta Maria Duarte Carvalho Vila, João Carlos Setubal, Taekjip Ha, Aline Maria da Silva, Victor M Balcão
Characterization and in vitro testing of newly isolated lytic bacteriophages for the biocontrol of Pseudomonas aeruginosa . Future microbiology 17 (2022)
Yanbo Wang, W Taylor Cottle, Haobo Wang, Momčilo Gavrilov, Roger S Zou, Minh-Tam Pham, Srinivasan Yegnasubramanian, Scott Bailey, Taekjip Ha
Achieving single nucleotide sensitivity in direct hybridization genome imaging. Nature communications 13 (1) (2022)
Roger S Zou, Momčilo Gavrilov, Yang Liu, Dominique Rasoloson, Madison Conte, Justin Hardick, Leo L Shen, Siqi Chen, Andrew S Pekosz, Geraldine Seydoux, Yukari C Manabe, Taekjip Ha
Improving the specificity of nucleic acid detection with endonuclease-actuated degradation. Communications biology 5 (1) (2022)
Ikenna C Okafor, Taekjip Ha
Single Molecule FRET Analysis of CRISPR Cas9 Single Guide RNA Folding Dynamics. The journal of physical chemistry. B 127 (1) (2022)
Ikenna C Okafor, Taekjip Ha
Single Molecule FRET Analysis of CRISPR Cas9 Single Guide RNA Folding Dynamics. The journal of physical chemistry. B (2022)
Ikenna C Okafor, Taekjip Ha
Single Molecule FRET Analysis of CRISPR Cas9 Single Guide RNA Folding Dynamics. The journal of physical chemistry. B 127 (1) (2022)
Ikenna C Okafor, Taekjip Ha
Single Molecule FRET Analysis of CRISPR Cas9 Single Guide RNA Folding Dynamics. The journal of physical chemistry. B 127 (1) (2022)
Sahiti Kuppa, Jaigeeth Deveryshetty, Rahul Chadda, Jenna R Mattice, Nilisha Pokhrel, Vikas Kaushik, Angela Patterson, Nalini Dhingra, Sushil Pangeni, Marisa K Sadauskas, Sajad Shiekh, Hamza Balci, Taekjip Ha, Xiaolan Zhao, Brian Bothner, Edwin Antony
Rtt105 regulates RPA function by configurationally stapling the flexible domains. Nature communications 13 (1) (2022)
Yo-Chuen Lin, Dazhen Liu, Arindam Chakraborty, Lyudmila Y Kadyrova, You Jin Song, Qinyu Hao, Jaba Mitra, Rosaline Y C Hsu, Mariam K Arif, Sneha Adusumilli, Ting-Wei Liao, Taekjip Ha, Farid A Kadyrov, Kannanganattu V Prasanth, Supriya G Prasanth
Orc6 is a component of the replication fork and enables efficient mismatch repair. Proceedings of the National Academy of Sciences of the United States of America 119 (22) (2022)
Momčilo Gavrilov, Joshua Y C Yang, Roger S Zou, Wen Ma, Chun-Ying Lee, Sonisilpa Mohapatra, Jimin Kang, Ting-Wei Liao, Sua Myong, Taekjip Ha
Engineered helicase replaces thermocycler in DNA amplification while retaining desired PCR characteristics. Nature communications 13 (1) (2022)
Matthew F Poyton, Xinyu Ashlee Feng, Anand Ranjan, Qin Lei, Feng Wang, Jasmin S Zarb, Robert K Louder, Giho Park, Myung Hyun Jo, Ziyang Ye, Sheng Liu, Taekjip Ha, Carl Wu
Coordinated DNA and histone dynamics drive accurate histone H2A.Z exchange. Science advances 8 (10) (2022)
Yanbo Wang, W Taylor Cottle, Haobo Wang, Momčilo Gavrilov, Roger S Zou, Minh-Tam Pham, Srinivasan Yegnasubramanian, Scott Bailey, Taekjip Ha
Achieving single nucleotide sensitivity in direct hybridization genome imaging. Nature communications 13 (1) (2022)
George K E Umanah, Leire Abalde-Atristain, Mohammed Repon Khan, Jaba Mitra, Mohamad Aasif Dar, Melissa Chang, Kavya Tangella, Amy McNamara, Samuel Bennett, Rong Chen, Vasudha Aggarwal, Marisol Cortes, Paul F Worley, Taekjip Ha, Ted M Dawson, Valina L Dawson
AAA + ATPase Thorase inhibits mTOR signaling through the disassembly of the mTOR complex 1. Nature communications 13 (1) (2022)
Roger S Zou, Alberto Marin-Gonzalez, Yang Liu, Hans B Liu, Leo Shen, Rachel K Dveirin, Jay X J Luo, Reza Kalhor, Taekjip Ha
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites. Nature cell biology 24 (9) (2022)
Yanbo Wang, W Taylor Cottle, Haobo Wang, Momčilo Gavrilov, Roger S Zou, Minh-Tam Pham, Srinivasan Yegnasubramanian, Scott Bailey, Taekjip Ha
Achieving single nucleotide sensitivity in direct hybridization genome imaging. Nature communications 13 (1) (2022)
Ikenna C Okafor, Taekjip Ha
Single Molecule FRET Analysis of CRISPR Cas9 Single Guide RNA Folding Dynamics. The journal of physical chemistry. B 127 (1) (2022)
Claudia C Carcamo, Matthew F Poyton, Anand Ranjan, Giho Park, Robert K Louder, Xinyu A Feng, Jee Min Kim, Thuc Dzu, Carl Wu, Taekjip Ha
ATP binding facilitates target search of SWR1 chromatin remodeler by promoting one-dimensional diffusion on DNA. eLife 11 (2022)
Hossein Moghimianavval, Chintan Patel, Sonisilpa Mohapatra, Sung-Won Hwang, Tunc Kayikcioglu, Yashar Bashirzadeh, Allen P Liu, Taekjip Ha
Engineering Functional Membrane-Membrane Interfaces by InterSpy. Small (Weinheim an der Bergstrasse, Germany) (2022)
Aakash Basu, Dmitriy G Bobrovnikov, Basilio Cieza, Juan Pablo Arcon, Zan Qureshi, Modesto Orozco, Taekjip Ha
Deciphering the mechanical code of the genome and epigenome. Nature structural & molecular biology (2022)
Nilmani Singh, Adriana Reyes-Ordoñez, Michael A Compagnone, Jesus F Moreno, Benjamin J Leslie, Taekjip Ha, Jie Chen
Redefining the specificity of phosphoinositide-binding by human PH domain-containing proteins. Nature communications 12 (1) (2021)
Anustup Poddar, Muhammad S Azam, Tunc Kayikcioglu, Maksym Bobrovskyy, Jichuan Zhang, Xiangqian Ma, Piyush Labhsetwar, Taekjip Ha, Digvijay Singh, Zaida Luthey-Schulten, Carin K Vanderpool, Taekjip Ha
Effects of individual base-pairs on in vivo target search and destruction kinetics of bacterial small RNA. Nature communications 12 (1) (2021)
Myung Hyun Jo, Byoung Choul Kim, Keewon Sung, Reynold A Panettieri, Steven S An, Jian Liu, Taekjip Ha
Molecular Nanomechanical Mapping of Histamine-Induced Smooth Muscle Cell Contraction and Shortening. ACS nano (2021)
Eitan Lerner, Anders Barth, Jelle Hendrix, Benjamin Ambrose, Victoria Birkedal, Scott C Blanchard, Richard Börner, Hoi Sung Chung, Thorben Cordes, Timothy D Craggs, Ashok A Deniz, Jiajie Diao, Taekjip Ha, Ruben L Gonzalez, Irina V Gopich, Taekjip Ha, Christian A Hanke, Gilad Haran, Nikos S Hatzakis, Sungchul Hohng, Seok-Cheol Hong, Thorsten Hugel, Antonino Ingargiola, Chirlmin Joo, Achillefs N Kapanidis, Harold D Kim, Ted Laurence, Nam Ki Lee, Tae-Hee Lee, Edward Anton Lemke, Emmanuel Margeat, Jens Michaelis, Xavier Michalet, Sua Myong, Daniel Nettels, Thomas-Otavio Peulen, Evelyn Ploetz, Yair Razvag, Nicole C Robb, Benjamin Schuler, Hamid Soleimaninejad, Chun Tang, Reza Vafabakhsh, Don C Lamb, Claus A M Seidel, Shimon Weiss
FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. eLife 10 (2021)
Jie Yu, Prashant Rao, Sarah Clark, Jaba Mitra, Taekjip Ha, Eric Gouaux
Hippocampal AMPA receptor assemblies and mechanism of allosteric inhibition. Nature 594 (7863) (2021)
Gehua Zhen, Qiaoyue Guo, Yusheng Li, Chuanlong Wu, Shouan Zhu, Ruomei Wang, X Edward Guo, Byoung Choul Kim, Jessie Huang, Yizhong Hu, Yang Dan, Mei Wan, Taekjip Ha, Steven S An, Xu Cao
Mechanical stress determines the configuration of TGFβ activation in articular cartilage. Nature communications 12 (1) (2021)
Li Dai, Digvijay Singh, Suoang Lu, Vishal I Kottadiel, Reza Vafabakhsh, Marthandan Mahalingam, Yann R Chemla, Taekjip Ha, Venigalla B Rao
A viral genome packaging ring-ATPase is a flexibly coordinated pentamer. Nature communications 12 (1) (2021)
Boyang Hua, Christopher P Jones, Jaba Mitra, Peter J Murray, Rebecca Rosenthal, Adrian R Ferré-D'Amaré, Taekjip Ha
Real-time monitoring of single ZTP riboswitches reveals a complex and kinetically controlled decision landscape. Nature communications 11 (1) (2020)
Arthur Korman, Huabing Sun, Boyang Hua, Haozhe Yang, Joseph N Capilato, Rakesh Paul, Subrata Panja, Taekjip Ha, Marc M Greenberg, Sarah A Woodson
Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space. Proceedings of the National Academy of Sciences of the United States of America 117 (22) (2020)
Aakash Basu, Dmitriy G Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T M Ngo, Anand Ranjan, Sebastian Eustermann, Basilio Cieza, Michael T Morgan, Miroslav Hejna, H Tomas Rube, Karl-Peter Hopfner, Cynthia Wolberger, Jun S Song, Taekjip Ha
Measuring DNA mechanics on the genome scale. Nature 589 (7842) (2020)
Yanbo Wang, John Mallon, Haobo Wang, Digvijay Singh, Myung Hyun Jo, Boyang Hua, Scott Bailey, Taekjip Ha
Real-time observation of Cas9 postcatalytic domain motions. Proceedings of the National Academy of Sciences of the United States of America 118 (2) (2020)
Yang Liu, Roger S Zou, Shuaixin He, Yuta Nihongaki, Xiaoguang Li, Shiva Razavi, Bin Wu, Taekjip Ha
Very fast CRISPR on demand. Science (New York, N.Y.) 368 (6496) (2020)
Jaba Mitra, Taekjip Ha
Nanomechanics and co-transcriptional folding of Spinach and Mango. Nature communications 10 (1) (2019)
Myung Hyun Jo, W Taylor Cottle, Taekjip Ha
Real-Time Measurement of Molecular Tension during Cell Adhesion and Migration Using Multiplexed Differential Analysis of Tension Gauge Tethers. ACS biomaterials science & engineering 5 (8) (2019)
Kathryn R Geiger-Schuller, Jaba Mitra, Taekjip Ha, Doug Barrick
Functional instability allows access to DNA in longer transcription Activator-Like effector (TALE) arrays. eLife 8 (2019)
Nannan Su, Alicia K Byrd, Sakshibeedu R Bharath, Olivia Yang, Yu Jia, Xuhua Tang, Taekjip Ha, Kevin D Raney, Haiwei Song
Structural basis for DNA unwinding at forked dsDNA by two coordinating Pif1 helicases. Nature communications 10 (1) (2019)
Ruobo Zhou, Olivia Yang, Anne-Cécile Déclais, Hyeonseok Jin, Gwang Hyeon Gwon, Alasdair D J Freeman, Yunje Cho, David M J Lilley, Taekjip Ha
Junction resolving enzymes use multivalency to keep the Holliday junction dynamic. Nature chemical biology 15 (3) (2019)
Michael Schlierf, Ganggang Wang, Xiaojiang S Chen, Taekjip Ha
Hexameric helicase G40P unwinds DNA in single base pair steps. eLife 8 (2019)
Sonisilpa Mohapatra, Chang-Ting Lin, Xinyu A Feng, Aakash Basu, Taekjip Ha
Single-Molecule Analysis and Engineering of DNA Motors. Chemical reviews 120 (1) (2019)
Jaba Mitra, Monika A Makurath, Thuy T M Ngo, Alice Troitskaia, Yann R Chemla, Taekjip Ha
Extreme mechanical diversity of human telomeric DNA revealed by fluorescence-force spectroscopy. Proceedings of the National Academy of Sciences of the United States of America 116 (17) (2019)
Björn Hellenkamp, Sonja Schmid, Olga Doroshenko, Oleg Opanasyuk, Ralf Kühnemuth, Soheila Rezaei Adariani, Benjamin Ambrose, Mikayel Aznauryan, Anders Barth, Victoria Birkedal, Mark E Bowen, Hongtao Chen, Thorben Cordes, Tobias Eilert, Carel Fijen, Christian Gebhardt, Markus Götz, Giorgos Gouridis, Enrico Gratton, Taekjip Ha, Pengyu Hao, Christian A Hanke, Andreas Hartmann, Jelle Hendrix, Lasse L Hildebrandt, Verena Hirschfeld, Johannes Hohlbein, Boyang Hua, Christian G Hübner, Eleni Kallis, Achillefs N Kapanidis, Jae-Yeol Kim, Georg Krainer, Don C Lamb, Nam Ki Lee, Edward Anton Lemke, Brié Levesque, Marcia Levitus, James J McCann, Nikolaus Naredi-Rainer, Daniel Nettels, Thuy Ngo, Ruoyi Qiu, Nicole C Robb, Carlheinz Röcker, Hugo Sanabria, Michael Schlierf, Tim Schröder, Benjamin Schuler, Henning Seidel, Lisa Streit, Johann Thurn, Philip Tinnefeld, Swati Tyagi, Niels Vandenberk, Andrés Manuel Vera, Keith R Weninger, Bettina Wünsch, Inna S Yanez-Orozco, Jens Michaelis, Claus A M Seidel, Timothy D Craggs, Thorsten Hugel
Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. Nature methods 15 (9) (2018)
Digvijay Singh, Yanbo Wang, John Mallon, Olivia Yang, Jingyi Fei, Anustup Poddar, Damon Ceylan, Scott Bailey, Taekjip Ha
Mechanisms of improved specificity of engineered Cas9s revealed by single-molecule FRET analysis. Nature structural & molecular biology 25 (4) (2018)
Boyang Hua, Subrata Panja, Yanbo Wang, Sarah A Woodson, Taekjip Ha
Mimicking Co-Transcriptional RNA Folding Using a Superhelicase. Journal of the American Chemical Society 140 (32) (2018)
Wanqu Zhu, Byoung Choul Kim, Mingyi Wang, Jessie Huang, Abraham Isak, Natalia M Bexiga, Robert Monticone, Taekjip Ha, Edward G Lakatta, Steven S An
TGFβ1 reinforces arterial aging in the vascular smooth muscle cell through a long-range regulation of the cytoskeletal stiffness. Scientific reports 8 (1) (2018)
Subrata Panja, Boyang Hua, Diego Zegarra, Taekjip Ha, Sarah A Woodson
Metals induce transient folding and activation of the twister ribozyme. Nature chemical biology 13 (10) (2017)
Jérôme Clatot, Malcolm Hoshi, Xiaoping Wan, Haiyan Liu, Ankur Jain, Krekwit Shinlapawittayatorn, Céline Marionneau, Eckhard Ficker, Taekjip Ha, Isabelle Deschênes
Voltage-gated sodium channels assemble and gate as dimers. Nature communications 8 (1) (2017)
Sanjaya C Abeysirigunawardena, Hajin Kim, Jonathan Lai, Kaushik Ragunathan, Mollie C Rappé, Zaida Luthey-Schulten, Taekjip Ha, Sarah A Woodson
Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. Nature communications 8 (1) (2017)
Thuy T M Ngo, Jejoong Yoo, Qing Dai, Qiucen Zhang, Chuan He, Aleksei Aksimentiev, Taekjip Ha
Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability. Nature communications 7 (2016)
Digvijay Singh, Samuel H Sternberg, Jingyi Fei, Jennifer A Doudna, Taekjip Ha
Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9. Nature communications 7 (2016)
Jejoong Yoo, Hajin Kim, Aleksei Aksimentiev, Taekjip Ha
Direct evidence for sequence-dependent attraction between double-stranded DNA controlled by methylation. Nature communications 7 (2016)

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Taekjip Ha