BMC biophysics

Keyphrases

Publications

volume 12, 2020

Paolo Mereghetti, Michael Martinez, Rebecca C Wade
Correction to: Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules. BMC biophysics 12 (2020)

volume 12, 2019

Huaping Sun, Zeyu Zheng, Olena A Fedorenko, Stephen K Roberts
Covalent linkage of bacterial voltage-gated sodium channels. BMC biophysics 12 (2019)

volume 11, 2018

Christian V Hansen, Hans J Schroll, Daniel Wüstner
A discontinuous Galerkin model for fluorescence loss in photobleaching of intracellular polyglutamine protein aggregates. BMC biophysics 11 (2018)
Špela Zemljič Jokhadar, Urška Klančnik, Maja Grundner, Tjaša Švelc Kebe, Saša Vrhovec Hartman, Mirjana Liović, Jure Derganc
GPMVs in variable physiological conditions: could they be used for therapy delivery? BMC biophysics 11 (2018)
Pavel Montes de Oca Balderas, Horacio Montes de Oca Balderas
Synaptic neuron-astrocyte communication is supported by an order of magnitude analysis of inositol tris-phosphate diffusion at the nanoscale in a model of peri-synaptic astrocyte projection. BMC biophysics 11 (2018)
Paulina Adamczewski, Valeria Tsoukanova
Phenylalanine intercalation parameters for liquid-disordered phase domains - a membrane model study. BMC biophysics 11 (2018)
Esin B Sözer, C Florencia Pocetti, P Thomas Vernier
Transport of charged small molecules after electropermeabilization - drift and diffusion. BMC biophysics 11 (2018)
Giuseppe Chirico, Alexander Gansen, Sanford H Leuba, Ada L Olins, Donald E Olins, Jeremy C Smith, Katalin Tóth
Jörg Langowski: his scientific legacy and the future it promises. BMC biophysics 11 (2018)
Ingrid M Weiss, Christina Muth, Robert Drumm, Helmut O K Kirchner
Thermal decomposition of the amino acids glycine, cysteine, aspartic acid, asparagine, glutamic acid, glutamine, arginine and histidine. BMC biophysics 11 (2018)
Asli Yildirim, Nathalie Brenner, Robert Sutherland, Michael F Feig
Role of protein interactions in stabilizing canonical DNA features in simulations of DNA in crowded environments. BMC biophysics 11 (2018)

volume 10, number Suppl 1, 2017

H Billur Engin, Daniel Carlin, Dexter Pratt, Hannah Carter
Modeling of RAS complexes supports roles in cancer for less studied partners. BMC biophysics 10 (Suppl 1) (2017)

volume 10, 2017

Ranja Sarkar
Native flexibility of structurally homologous proteins: insights from anisotropic network model. BMC biophysics 10 (2017)
Sara Carozza, Jamie Culkin, John van Noort
Accuracy of the detection of binding events using 3D single particle tracking. BMC biophysics 10 (2017)
Efrain H Pinzon, Daniel A Sierra, Miguel O Suarez, Sergio Orduz, Alvaro M Florez
DNA secondary structure formation by DNA shuffling of the conserved domains of the Cry protein of Bacillus thuringiensis. BMC biophysics 10 (2017)
Baosheng Ge, Xiaoyong Jiang, Yao Chen, Tingting Sun, Qiuxia Yang, Fang Huang
Kinetic and thermodynamic studies reveal chemokine homologues CC11 and CC24 with an almost identical tertiary structure have different folding pathways. BMC biophysics 10 (2017)
Daniel Šmít, Coralie Fouquet, Mohamed Doulazmi, Frédéric Pincet, Alain Trembleau, Martin Zapotocky
BFPTool: a software tool for analysis of Biomembrane Force Probe experiments. BMC biophysics 10 (2017)
Lucas C Wheeler, Michael J Harms
Human S100A5 binds Ca2+ and Cu2+ independently. BMC biophysics 10 (2017)

volume 9, 2016

Yareni A Ayala, Bruno Pontes, Diney S Ether, Luis B Pires, Glauber R Araujo, Susana Frases, Luciana F Romão, Marcos Farina, Vivaldo Moura-Neto, Nathan B Viana, H Moysés Nussenzveig
Rheological properties of cells measured by optical tweezers. BMC biophysics 9 (2016)
Philipp Kynast, Philippe Derreumaux, Birgit Strodel
Evaluation of the coarse-grained OPEP force field for protein-protein docking. BMC biophysics 9 (2016)
Chien Y Lin, Jung Y Huang, Leu-Wei Lo
Exploring in vivo cholesterol-mediated interactions between activated EGF receptors in plasma membrane with single-molecule optical tracking. BMC biophysics 9 (2016)
Christopher H Bohrer, Elijah Roberts
A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation. BMC biophysics 9 (2016)
Jia Bai, Zeting Zhang, Maili Liu, Conggang Li
α-synuclein-lanthanide metal ions interaction: binding sites, conformation and fibrillation. BMC biophysics 9 (2016)
Clemens Sill, Ralf Biehl, Bernd Hoffmann, Aurel Radulescu, Marie-Sousai Appavou, Bela Farago, Rudolf Merkel, Dieter Richter
Structure and domain dynamics of human lactoferrin in solution and the influence of Fe(III)-ion ligand binding. BMC biophysics 9 (2016)

volume 8, number 1, 2015

Renmin Han, Liansan Wang, Fan Xu, Yongdeng Zhang, Mingshu Zhang, Zhiyong Liu, Fei Ren, Fa Zhang
Drift correction for single-molecule imaging by molecular constraint field, a distance minimum metric. BMC biophysics 8 (1) (2015)
Hui Ye, Austen Curcuru
Vesicle biomechanics in a time-varying magnetic field. BMC biophysics 8 (1) (2015)

volume 8, 2015

Aarón Ayllón Benítez, José Ginés Hernández Cifre, Francisco Guillermo Díaz Baños, José García de la Torre
Prediction of solution properties and dynamics of RNAs by means of Brownian dynamics simulation of coarse-grained models: Ribosomal 5S RNA and phenylalanine transfer RNA. BMC biophysics 8 (2015)
Wenxiao Pan, Michael Daily, Nathan A Baker
Numerical calculation of protein-ligand binding rates through solution of the Smoluchowski equation using smoothed particle hydrodynamics. BMC biophysics 8 (2015)
Phuong H Nguyen, Anna M Popova, Kálmán Hideg, Peter Z Qin
A nucleotide-independent cyclic nitroxide label for monitoring segmental motions in nucleic acids. BMC biophysics 8 (2015)
Elfriede Friedmann
PDE/ODE modeling and simulation to determine the role of diffusion in long-term and -range cellular signaling. BMC biophysics 8 (2015)
Richard P Sear, Ignacio Pagonabarraga, Andrew Flaus
Life at the mesoscale: the self-organised cytoplasm and nucleoplasm. BMC biophysics 8 (2015)
Jorine M Eeftens, Jaco van der Torre, Daniel R Burnham, Cees Dekker
Copper-free click chemistry for attachment of biomolecules in magnetic tweezers. BMC biophysics 8 (2015)
Ramiro Magno, Verônica A Grieneisen, Athanasius Fm Marée
The biophysical nature of cells: potential cell behaviours revealed by analytical and computational studies of cell surface mechanics. BMC biophysics 8 (2015)
Christoph Roethlein, Markus S Miettinen, Zoya Ignatova
A flexible approach to assess fluorescence decay functions in complex energy transfer systems. BMC biophysics 8 (2015)

volume 7, number 1, 2014

Xuesi M Shao, Liyo Kao, Ira Kurtz
A novel delta current method for transport stoichiometry estimation. BMC biophysics 7 (1) (2014)
Gaston Hui-Bon-Hoa, Hussein Kaddour, Jacques Vergne, Sergei G Kruglik, Marie-Christine Maurel
Raman characterization of Avocado Sunblotch viroid and its response to external perturbations and self-cleavage. BMC biophysics 7 (1) (2014)
Yang Liu, Shikhar Uttam, Sergey Alexandrov, Rajan K Bista
Investigation of nanoscale structural alterations of cell nucleus as an early sign of cancer. BMC biophysics 7 (1) (2014)

volume 7, 2014

David E Shoup
Diffusion-controlled reaction rates for two active sites on a sphere. BMC biophysics 7 (2014)
Phanourios Tamamis, Chris A Kieslich, Gregory V Nikiforovich, Trent M Woodruff, Dimitrios Morikis, Georgios Archontis
Insights into the mechanism of C5aR inhibition by PMX53 via implicit solvent molecular dynamics simulations and docking. BMC biophysics 7 (2014)
Ali Kinkhabwala, Anton Khmelinskii, Michael Knop
Analytical model for macromolecular partitioning during yeast cell division. BMC biophysics 7 (2014)
Sanford H Leuba, Sean M Carney, Elizabeth M Dahlburg, Rebecca J Eells, Harshad Ghodke, Naveena Yanamala, Grant Schauer, Judith Klein-Seetharaman
Early integration of the individual student in academic activities: a novel classroom concept for graduate education in molecular biophysics and structural biology. BMC biophysics 7 (2014)
Michael Junk, Judy Salzwedel, Thilo Sindlinger, Alexander Bürkle, Maria Moreno-Villanueva
Mathematical modelling of the automated FADU assay for the quantification of DNA strand breaks and their repair in human peripheral mononuclear blood cells. BMC biophysics 7 (2014)
Kyu Il Lee, Wonpil Im, Richard W Pastor
Langevin dynamics simulations of charged model phosphatidylinositol lipids in the presence of diffusion barriers: toward an atomic level understanding of corralling of PIP2 by protein fences in biological membranes. BMC biophysics 7 (2014)
Paolo Mereghetti, Michael Martinez, Rebecca C Wade
Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules. BMC biophysics 7 (2014)
Johannes Schöneberg, Alexander Ullrich, Frank Noé
Simulation tools for particle-based reaction-diffusion dynamics in continuous space. BMC biophysics 7 (2014)
Kristina N Woods
The glassy state of crambin and the THz time scale protein-solvent fluctuations possibly related to protein function. BMC biophysics 7 (2014)

volume 6, number 1, 2013

Nadeem A Vellore, Riccardo Baron
Molecular dynamics simulations indicate an induced-fit mechanism for LSD1/CoREST-H3-histone molecular recognition. BMC biophysics 6 (1) (2013)
John A Myers, Brandon S Curtis, Wayne R Curtis
Improving accuracy of cell and chromophore concentration measurements using optical density. BMC biophysics 6 (1) (2013)
Bogdan I Costescu, Frauke Gräter
Time-resolved force distribution analysis. BMC biophysics 6 (1) (2013)
Brittany Burton Lott, Yongmei Wang, Takuya Nakazato
A comparative study of ribosomal proteins: linkage between amino acid distribution and ribosomal assembly. BMC biophysics 6 (1) (2013)
Donatello Materassi, Subhrajit Roychowdhury, Thomas Hays, Murti Salapaka
An exact approach for studying cargo transport by an ensemble of molecular motors. BMC biophysics 6 (1) (2013)