Ava P Soleimany (A P Soleimany, Ava P Amini)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 35

Top Topics

Circulating Tumor

High Throughput Sequencing

Acute Lymphoblastic Leukemia

Top Venues

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

Nature communications

Nature computational science

This page only lists publications with an associated author ORCID identifier.

Publications

Carmen Martin-Alonso, Shervin Tabrizi, Kan Xiong, Timothy Blewett, Sainetra Sridhar, Andjela Crnjac, Sahil Patel, Zhenyi An, Ahmet Bekdemir, Douglas Shea, Shih-Ting Wang, Sergio A Rodriguez-Aponte, Christopher A Naranjo, Justin Rhoades, Jesse D Kirkpatrick, Sangeeta N Bhatia, Ava P Soleimany, Todd R Golub, John Christopher Love, Sangeeta N Bhatia, Viktor A Adalsteinsson
Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies. Science (New York, N.Y.) 383 (6680) (2024)
Kevin E Wu, Kevin K Yang, Rianne van den Berg, Sarah Alamdari, James Y Zou, Alex X Lu, Ava P Soleimany
Protein structure generation via folding diffusion. Nature communications 15 (1) (2024)
Kevin E Wu, Kevin K Yang, Rianne van den Berg, Sarah Alamdari, James Y Zou, Alex X Lu, Ava P Soleimany
Protein structure generation via folding diffusion. Nature communications 15 (1) (2024)
Chibuikem Nwizu, Madeline Hughes, Michelle L Ramseier, Andrew W Navia, Alex K Shalek, Nicolo Fusi, Srivatsan Raghavan, Peter S Winter, Ava P Soleimany, Lorin Crawford
Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data. bioRxiv : the preprint server for biology (2024)
Carmen Martin-Alonso, Shervin Tabrizi, Kan Xiong, Timothy Blewett, Sainetra Sridhar, Andjela Crnjac, Sahil Patel, Zhenyi An, Ahmet Bekdemir, Douglas Shea, Shih-Ting Wang, Sergio A Rodriguez-Aponte, Christopher A Naranjo, Justin Rhoades, Jesse D Kirkpatrick, Sangeeta N Bhatia, Ava P Soleimany, Todd R Golub, John Christopher Love, Sangeeta N Bhatia, Viktor A Adalsteinsson
Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies. Science (New York, N.Y.) 383 (6680) (2024)
Kevin E Wu, Kevin K Yang, Rianne van den Berg, Sarah Alamdari, James Y Zou, Alex X Lu, Ava P Soleimany
Protein structure generation via folding diffusion. Nature communications 15 (1) (2024)
Carmen Martin-Alonso, Shervin Tabrizi, Kan Xiong, Timothy Blewett, Sainetra Sridhar, Andjela Crnjac, Sahil Patel, Zhenyi An, Ahmet Bekdemir, Douglas Shea, Shih-Ting Wang, Sergio A Rodriguez-Aponte, Christopher A Naranjo, Justin Rhoades, Jesse D Kirkpatrick, Sangeeta N Bhatia, Ava P Soleimany, Todd R Golub, John Christopher Love, Sangeeta N Bhatia, Viktor A Adalsteinsson
Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies. Science (New York, N.Y.) 383 (6680) (2024)
Carmen Martin-Alonso, Shervin Tabrizi, Kan Xiong, Timothy Blewett, Sainetra Sridhar, Andjela Crnjac, Sahil Patel, Zhenyi An, Ahmet Bekdemir, Douglas Shea, Shih-Ting Wang, Sergio A Rodriguez-Aponte, Christopher A Naranjo, Justin Rhoades, Jesse D Kirkpatrick, Sangeeta N Bhatia, Ava P Soleimany, Todd R Golub, John Christopher Love, Sangeeta N Bhatia, Viktor A Adalsteinsson
Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies. Science (New York, N.Y.) 383 (6680) (2024)
Peter S Winter, Michelle L Ramseier, Andrew W Navia, Sachit D Saksena, Haley Strouf, Nezha Senhaji, Alan DenAdel, Mahnoor Mirza, Hyun Hwan An, Laura Bilal, Peter Dennis, Catharine S Leahy, Kay Shigemori, Jennyfer Galves-Reyes, Ye Zhang, Foster Powers, Nolawit Mulugeta, Alejandro J Gupta, Nicholas L Calistri, Alexandria Van Scoyk, Kristen Jones, Huiyun Liu, Kristen E Stevenson, Siyang Ren, Marlise R Luskin, Charles P Couturier, Ava P Soleimany, Srivatsan Raghavan, Robert J Kimmerling, Mark M Stevens, Lorin Crawford, David M Weinstock, Scott R Manalis, Alex K Shalek, Mark A Murakami
Mutation and cell state compatibility is required and targetable in Ph + acute lymphoblastic leukemia minimal residual disease. bioRxiv : the preprint server for biology (2024)
Chibuikem Nwizu, Madeline Hughes, Michelle L Ramseier, Andrew W Navia, Alex K Shalek, Nicolo Fusi, Srivatsan Raghavan, Peter S Winter, Ava P Soleimany, Lorin Crawford
Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data. bioRxiv : the preprint server for biology (2024)
Chibuikem Nwizu, Madeline Hughes, Michelle L Ramseier, Andrew W Navia, Alex K Shalek, Nicolo Fusi, Srivatsan Raghavan, Peter S Winter, Ava P Soleimany, Lorin Crawford
Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data. bioRxiv : the preprint server for biology (2024)
Ava P Soleimany, Kevin K Yang
From noise to protein with image models. Nature computational science 3 (5) (2024)
Ava P Soleimany, Kevin K Yang
From noise to protein with image models. Nature computational science 3 (5) (2024)
Peter S Winter, Michelle L Ramseier, Andrew W Navia, Sachit D Saksena, Haley Strouf, Nezha Senhaji, Alan DenAdel, Mahnoor Mirza, Hyun Hwan An, Laura Bilal, Peter Dennis, Catharine S Leahy, Kay Shigemori, Jennyfer Galves-Reyes, Ye Zhang, Foster Powers, Nolawit Mulugeta, Alejandro J Gupta, Nicholas L Calistri, Alexandria Van Scoyk, Kristen Jones, Huiyun Liu, Kristen E Stevenson, Siyang Ren, Marlise R Luskin, Charles P Couturier, Ava P Soleimany, Srivatsan Raghavan, Robert J Kimmerling, Mark M Stevens, Lorin Crawford, David M Weinstock, Scott R Manalis, Alex K Shalek, Mark A Murakami
Mutation and cell state compatibility is required and targetable in Ph + acute lymphoblastic leukemia minimal residual disease. bioRxiv : the preprint server for biology (2024)
Carmen Martin-Alonso, Shervin Tabrizi, Kan Xiong, Timothy Blewett, Sainetra Sridhar, Andjela Crnjac, Sahil Patel, Zhenyi An, Ahmet Bekdemir, Douglas Shea, Shih-Ting Wang, Sergio A Rodriguez-Aponte, Christopher A Naranjo, Justin Rhoades, Jesse D Kirkpatrick, Sangeeta N Bhatia, Ava P Soleimany, Todd R Golub, John Christopher Love, Sangeeta N Bhatia, Viktor A Adalsteinsson
Priming agents transiently reduce the clearance of cell-free DNA to improve liquid biopsies. Science (New York, N.Y.) 383 (6680) (2024)
Peter S Winter, Michelle L Ramseier, Andrew W Navia, Sachit D Saksena, Haley Strouf, Nezha Senhaji, Alan DenAdel, Mahnoor Mirza, Hyun Hwan An, Laura Bilal, Peter Dennis, Catharine S Leahy, Kay Shigemori, Jennyfer Galves-Reyes, Ye Zhang, Foster Powers, Nolawit Mulugeta, Alejandro J Gupta, Nicholas L Calistri, Alexandria Van Scoyk, Kristen Jones, Huiyun Liu, Kristen E Stevenson, Siyang Ren, Marlise R Luskin, Charles P Couturier, Ava P Soleimany, Srivatsan Raghavan, Robert J Kimmerling, Mark M Stevens, Lorin Crawford, David M Weinstock, Scott R Manalis, Alex K Shalek, Mark A Murakami
Mutation and cell state compatibility is required and targetable in Ph+ acute lymphoblastic leukemia minimal residual disease. bioRxiv : the preprint server for biology (2024)
Kevin E Wu, Kevin K Yang, Rianne van den Berg, Sarah Alamdari, James Y Zou, Alex X Lu, Ava P Soleimany
Protein structure generation via folding diffusion. Nature communications 15 (1) (2024)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Carolina Rios-Martinez, Nicholas Bhattacharya, Ava P Soleimany, Lorin Crawford, Kevin K Yang
Deep self-supervised learning for biosynthetic gene cluster detection and product classification. PLoS computational biology 19 (5) (2023)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Aereas Aung, Ang Cui, Laura Maiorino, Ava P Soleimany, Justin R Gregory, Maurice Bukenya, Yiming J Zhang, Heya Lee, Christopher A Cottrell, Duncan M Morgan, Murillo Silva, Heikyung Suh, Jesse D Kirkpatrick, Parastoo Amlashi, Tanaka Remba, Leah M Froehle, Shuhao Xiao, Wuhbet Abraham, Josetta Adams, John Christopher Love, Phillip Huyett, Douglas S Kwon, Nir Hacohen, William R Schief, Sangeeta N Bhatia, Darrell J Irvine
Low protease activity in B cell follicles promotes retention of intact antigens after immunization. Science (New York, N.Y.) 379 (6630) (2023)
Ava P Soleimany, Jesse D Kirkpatrick, Cathy S Wang, Alex M Jaeger, Susan Su, Santiago Naranjo, Qian Zhong, Christina M Cabana, Tyler Jacks, Sangeeta N Bhatia
Multiscale profiling of protease activity in cancer. Nature communications 13 (1) (2022)
Ava P Soleimany, Carmen Martin-Alonso, Melodi Anahtar, Cathy S Wang, Sangeeta N Bhatia
Protease Activity Analysis: A Toolkit for Analyzing Enzyme Activity Data. ACS omega 7 (28) (2022)
Ava P Soleimany, Alexander Amini, Samuel Goldman, Daniela Rus, Sangeeta N Bhatia, Connor W Coley
Evidential Deep Learning for Guided Molecular Property Prediction and Discovery. ACS central science 7 (8) (2021)
Jesse D Kirkpatrick, Andrew D Warren, Ava P Soleimany, Peter M K Westcott, Justin C Voog, Carmen Martin-Alonso, Sangeeta N Bhatia, Tuomas Tammela, Tyler Jacks, Sangeeta N Bhatia
Urinary detection of lung cancer in mice via noninvasive pulmonary protease profiling. Science translational medicine 12 (537) (2021)
Jiang He, Lior Nissim, Ava P Soleimany, Adina Binder-Nissim, Heather E Fleming, Timothy K Lu, Sangeeta N Bhatia
Synthetic Circuit-Driven Expression of Heterologous Enzymes for Disease Detection. ACS synthetic biology 10 (9) (2021)
Naveen K Mehta, Roma V Pradhan, Ava P Soleimany, Kelly D Moynihan, Adrienne M Rothschilds, Noor Momin, Kavya Rakhra, Jordi Mata-Fink, Sangeeta N Bhatia, Karl Dane Wittrup, Darrell J Irvine
Pharmacokinetic tuning of protein-antigen fusions enhances the immunogenicity of T-cell vaccines. Nature biomedical engineering 4 (6) (2020)
Ava P Soleimany, Jesse D Kirkpatrick, Susan Su, Jaideep S Dudani, Qian Zhong, Ahmet Bekdemir, Sangeeta N Bhatia
Activatable Zymography Probes Enable In Situ Localization of Protease Dysregulation in Cancer. Cancer research 81 (1) (2020)
Colleen N Loynachan, Ava P Soleimany, Jaideep S Dudani, Yiyang Lin, Adrian Najer, Ahmet Bekdemir, Qu Chen, Sangeeta N Bhatia, Molly M Stevens
Renal clearable catalytic gold nanoclusters for in vivo disease monitoring. Nature nanotechnology 14 (9) (2019)
S Schuerle, Ava P Soleimany, Tiffany Yeh, G M Anand, M Häberli, Sangeeta N Bhatia, N Mirkhani, F Qiu, Sabine Hauert, Xiaopu Wang, Bradley J Nelson
Synthetic and living micropropellers for convection-enhanced nanoparticle transport. Science advances 5 (4) (2019)