Adam Shlien (A Shlien)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 43

Top Topics

Genome Wide Association

Top Venues

Nature communications

Cancer research communications

This page only lists publications with an associated author ORCID identifier.

Publications

Richard J Gilbertson, Sam Behjati, Anna-Lisa Böttcher, Marianne E Bronner, Matthew Burridge, Henrick Clausing, Harry Clifford, Tracey Danaher, Laura K Donovan, Jarno Drost, Alexander M M Eggermont, Chris Emerson, Mona G Flores, Petra Hamerlik, Nada Jabado, Andrew Jones, Henrick Kaessmann, Claudia L Kleinman, Marcel Kool, Lena M Kutscher, Gavin Lindberg, Emily Linnane, John C Marioni, John M Maris, Michelle Monje, Alexandra Macaskill, Steven A Niederer, Paul A Northcott, Elizabeth Peeters, Willemijn Plieger-van Solkema, Liane Preußner, Anne C Rios, Karsten Rippe, Peter Sandford, Nikolaos G Sgourakis, Adam Shlien, Pete Smith, Karin Straathof, Patrick J Sullivan, Mario L Suvà, Michael D Taylor, Emma Thompson, Roser Vento-Tormo, Brandon J Wainwright, Robert J Wechsler-Reya, Frank Westermann, Shannon Winslade, Bissan Al-Lazikani, Stefan M Pfister
The Virtual Child. Cancer discovery 14 (4) (2024)
Peter G Hendrickson, Kristianne M Oristian, MaKenna R Browne, Lixia Luo, Yan Ma, Diana M Cardona, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Corinne M Linardic, David G Kirsch
Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice. Oncogene 43 (16) (2024)
Katrina M Ingley, Matthew Zatzman, A M Fontebasso, W Lo, Vallijah Subasri, A Goldenberg, Y Li, S Davidson, N Kanwar, L Waldman, L Brunga, Y Babichev, E G Demicco, A Gupta, M Szybowska, S Thipphavong, D Malkin, A Villani, Adam Shlien, R A Gladdy, Raymond H Kim
Genomic and clinical characterization of a familial GIST kindred intolerant to imatinib. NPJ genomic medicine 9 (1) (2024)
Katrina M Ingley, Matthew Zatzman, A M Fontebasso, W Lo, Vallijah Subasri, A Goldenberg, Y Li, S Davidson, N Kanwar, L Waldman, L Brunga, Y Babichev, E G Demicco, A Gupta, M Szybowska, S Thipphavong, D Malkin, A Villani, Adam Shlien, R A Gladdy, Raymond H Kim
Genomic and clinical characterization of a familial GIST kindred intolerant to imatinib. NPJ genomic medicine 9 (1) (2024)
Peter G Hendrickson, Kristianne M Oristian, MaKenna R Browne, Lixia Luo, Yan Ma, Diana M Cardona, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Corinne M Linardic, David G Kirsch
Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice. Oncogene 43 (16) (2024)
Derek Wong, Maha Tageldein, Ping Luo, Erik Ensminger, Jeffrey Bruce, Leslie Oldfield, Haifan Gong, Nicholas William Fischer, Brianne Laverty, Vallijah Subasri, Scott Davidson, Reem Khan, Anita Villani, Adam Shlien, Raymond H Kim, David Malkin, Trevor J Pugh
Cell-free DNA from germline TP53 mutation carriers reflect cancer-like fragmentation patterns. Nature communications 15 (1) (2024)
Derek Wong, Maha Tageldein, Ping Luo, Erik Ensminger, Jeffrey Bruce, Leslie Oldfield, Haifan Gong, Nicholas William Fischer, Brianne Laverty, Vallijah Subasri, Scott Davidson, Reem Khan, Anita Villani, Adam Shlien, Raymond H Kim, David Malkin, Trevor J Pugh
Cell-free DNA from germline TP53 mutation carriers reflect cancer-like fragmentation patterns. Nature communications 15 (1) (2024)
Peter G Hendrickson, Kristianne M Oristian, MaKenna R Browne, Lixia Luo, Yan Ma, Diana M Cardona, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Corinne M Linardic, David G Kirsch
Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice. Oncogene 43 (16) (2024)
Peter G Hendrickson, Kristianne M Oristian, MaKenna R Browne, Lixia Luo, Yan Ma, Diana M Cardona, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Corinne M Linardic, David G Kirsch
Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice. Oncogene (2024)
Peter G Hendrickson, Kristianne M Oristian, MaKenna R Browne, Lixia Luo, Yan Ma, Diana M Cardona, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Corinne M Linardic, David G Kirsch
Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice. Oncogene (2024)
Peter G Hendrickson, Kristianne M Oristian, MaKenna R Browne, Lixia Luo, Yan Ma, Diana M Cardona, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Corinne M Linardic, David G Kirsch
Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice. Oncogene 43 (16) (2024)
Peter G Hendrickson, Kristianne M Oristian, MaKenna R Browne, Lixia Luo, Yan Ma, Diana M Cardona, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Corinne M Linardic, David G Kirsch
Spontaneous expression of the CIC::DUX4 fusion oncoprotein from a conditional allele potently drives sarcoma formation in genetically engineered mice. Oncogene 43 (16) (2024)
Derek Wong, Maha Tageldein, Ping Luo, Erik Ensminger, Jeffrey Bruce, Leslie Oldfield, Haifan Gong, Nicholas William Fischer, Brianne Laverty, Vallijah Subasri, Scott Davidson, Reem Khan, Anita Villani, Adam Shlien, Raymond H Kim, David Malkin, Trevor J Pugh
Cell-free DNA from germline TP53 mutation carriers reflect cancer-like fragmentation patterns. Nature communications 15 (1) (2024)
Federico Comitani, Joshua O Nash, Sarah Cohen-Gogo, Astra I Chang, Timmy T Wen, Anant Maheshwari, Bipasha Goyal, Earvin S Tio, Kevin Tabatabaei, Chelsea Mayoh, Regis Zhao, Ben Ho, Ledia Brunga, John E G Lawrence, Petra Balogh, Adrienne M Flanagan, Sarah A Teichmann, Annie Huang, Vijay Ramsawami, Johann K Hitzler, Jonathan D Wasserman, Rebecca A Gladdy, Brendan C Dickson, Uri Tabori, Mark J Cowley, Sam Behjati, David Malkin, Anita Villani, Meredith S Irwin, Adam Shlien
Diagnostic classification of childhood cancer using multiscale transcriptomics. Nature medicine 29 (3) (2023)
Federico Comitani, Joshua O Nash, Sarah Cohen-Gogo, Astra I Chang, Timmy T Wen, Anant Maheshwari, Bipasha Goyal, Earvin S Tio, Kevin Tabatabaei, Chelsea Mayoh, Regis Zhao, Ben Ho, Ledia Brunga, John E G Lawrence, Petra Balogh, Adrienne M Flanagan, Sarah A Teichmann, Annie Huang, Vijay Ramsawami, Johann K Hitzler, Jonathan D Wasserman, Rebecca A Gladdy, Brendan C Dickson, Uri Tabori, Mark J Cowley, Sam Behjati, David Malkin, Anita Villani, Meredith S Irwin, Adam Shlien
Diagnostic classification of childhood cancer using multiscale transcriptomics. Nature medicine (2023)
Vallijah Subasri, Nicholas Light, Nisha Kanwar, Jack J Brzezinski, Ping Luo, Jordan R Hansford, Elizabeth Cairney, Carol Portwine, Christine Elser, Jonathan L Finlay, Kim E Nichols, Noa Alon, Ledia Brunga, Jo Anson, Wendy K Kohlmann, Kelvin César de Andrade, Payal P Khincha, Sharon A Savage, Joshua D Schiffman, Rosanna Weksberg, Trevor J Pugh, Anita Villani, Adam Shlien, Anna Goldenberg, David Malkin
Multiple Germline Events Contribute to Cancer Development in Patients with Li-Fraumeni Syndrome. Cancer research communications 3 (5) (2023)
Ivette Valencia-Sama, Lynn Kee, Gabriella Christopher, Michael Ohh, Mehdi Layeghifard, Adam Shlien, Madeline N Hayes, Meredith S Irwin
SHP2 inhibition with TNO155 increases efficacy and overcomes resistance of ALK inhibitors in neuroblastoma. Cancer research communications (2023)
Nicholas Light, Mehdi Layeghifard, Ayush Attery, Vallijah Subasri, Matthew Zatzman, Nathaniel D Anderson, Rupal Hatkar, Sasha Blay, David Chen, Ana Novokmet, Fabio Fuligni, James Tran, Richard de Borja, Himanshi Agarwal, Larissa Waldman, Lisa M Abegglen, Daniel Albertson, Jonathan L Finlay, Jordan R Hansford, Sam Behjati, Anita Villani, Moritz Gerstung, Ludmil B Alexandrov, Gino R Somers, Joshua D Schiffman, Varda Rotter, David Malkin, Adam Shlien
Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis. Nature communications 14 (1) (2023)
Vallijah Subasri, Nicholas Light, Nisha Kanwar, Jack J Brzezinski, Ping Luo, Jordan R Hansford, Elizabeth Cairney, Carol Portwine, Christine Elser, Jonathan L Finlay, Kim E Nichols, Noa Alon, Ledia Brunga, Jo Anson, Wendy K Kohlmann, Kelvin César de Andrade, Payal P Khincha, Sharon A Savage, Joshua D Schiffman, Rosanna Weksberg, Trevor J Pugh, Anita Villani, Adam Shlien, Anna Goldenberg, David Malkin
Multiple Germline Events Contribute to Cancer Development in Patients with Li-Fraumeni Syndrome. Cancer research communications 3 (5) (2023)
Nicholas Light, Mehdi Layeghifard, Ayush Attery, Vallijah Subasri, Matthew Zatzman, Nathaniel D Anderson, Rupal Hatkar, Sasha Blay, David Chen, Ana Novokmet, Fabio Fuligni, James Tran, Richard de Borja, Himanshi Agarwal, Larissa Waldman, Lisa M Abegglen, Daniel Albertson, Jonathan L Finlay, Jordan R Hansford, Sam Behjati, Anita Villani, Moritz Gerstung, Ludmil B Alexandrov, Gino R Somers, Joshua D Schiffman, Varda Rotter, David Malkin, Adam Shlien
Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis. Nature communications 14 (1) (2023)
Nicholas Light, Mehdi Layeghifard, Ayush Attery, Vallijah Subasri, Matthew Zatzman, Nathaniel D Anderson, Rupal Hatkar, Sasha Blay, David Chen, Ana Novokmet, Fabio Fuligni, James Tran, Richard de Borja, Himanshi Agarwal, Larissa Waldman, Lisa M Abegglen, Daniel Albertson, Jonathan L Finlay, Jordan R Hansford, Sam Behjati, Anita Villani, Moritz Gerstung, Ludmil B Alexandrov, Gino R Somers, Joshua D Schiffman, Varda Rotter, David Malkin, Adam Shlien
Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis. Nature communications 14 (1) (2023)
R Taylor Durall, Julianna Huang, Luke Wojenski, Yeying Huang, Prafulla C Gokhale, Brittaney A Leeper, Joshua O Nash, Pedro L Ballester, Scott Davidson, Adam Shlien, Emmanuel Sotirakis, Fabien Bertaux, Vincent Dubus, Jia Luo, Catherine J Wu, Derin B Keskin, Kyle P Eagen, Geoffrey I Shapiro, Christopher A French
The BRD4-NUT fusion alone drives malignant transformation of NUT carcinoma. Cancer research (2023)
Federico Comitani, Joshua O Nash, Sarah Cohen-Gogo, Astra I Chang, Timmy T Wen, Anant Maheshwari, Bipasha Goyal, Earvin S Tio, Kevin Tabatabaei, Chelsea Mayoh, Regis Zhao, Ben Ho, Ledia Brunga, John E G Lawrence, Petra Balogh, Adrienne M Flanagan, Sarah A Teichmann, Annie Huang, Vijay Ramsawami, Johann K Hitzler, Jonathan D Wasserman, Rebecca A Gladdy, Brendan C Dickson, Uri Tabori, Mark J Cowley, Sam Behjati, David Malkin, Anita Villani, Meredith S Irwin, Adam Shlien
Diagnostic classification of childhood cancer using multiscale transcriptomics. Nature medicine 29 (3) (2023)
Nicholas Light, Mehdi Layeghifard, Ayush Attery, Vallijah Subasri, Matthew Zatzman, Nathaniel D Anderson, Rupal Hatkar, Sasha Blay, David Chen, Ana Novokmet, Fabio Fuligni, James Tran, Richard de Borja, Himanshi Agarwal, Larissa Waldman, Lisa M Abegglen, Daniel Albertson, Jonathan L Finlay, Jordan R Hansford, Sam Behjati, Anita Villani, Moritz Gerstung, Ludmil B Alexandrov, Gino R Somers, Joshua D Schiffman, Varda Rotter, David Malkin, Adam Shlien
Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis. Nature communications 14 (1) (2023)
Nicholas Light, Mehdi Layeghifard, Ayush Attery, Vallijah Subasri, Matthew Zatzman, Nathaniel D Anderson, Rupal Hatkar, Sasha Blay, David Chen, Ana Novokmet, Fabio Fuligni, James Tran, Richard de Borja, Himanshi Agarwal, Larissa Waldman, Lisa M Abegglen, Daniel Albertson, Jonathan L Finlay, Jordan R Hansford, Sam Behjati, Anita Villani, Moritz Gerstung, Ludmil B Alexandrov, Gino R Somers, Joshua D Schiffman, Varda Rotter, David Malkin, Adam Shlien
Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis. Nature communications 14 (1) (2023)
Vallijah Subasri, Nicholas Light, Nisha Kanwar, Jack J Brzezinski, Ping Luo, Jordan R Hansford, Elizabeth Cairney, Carol Portwine, Christine Elser, Jonathan L Finlay, Kim E Nichols, Noa Alon, Ledia Brunga, Jo Anson, Wendy K Kohlmann, Kelvin César de Andrade, Payal P Khincha, Sharon A Savage, Joshua D Schiffman, Rosanna Weksberg, Trevor J Pugh, Anita Villani, Adam Shlien, Anna Goldenberg, David Malkin
Multiple Germline Events Contribute to Cancer Development in Patients with Li-Fraumeni Syndrome. Cancer research communications 3 (5) (2023)
Vallijah Subasri, Nicholas Light, Nisha Kanwar, Jack J Brzezinski, Ping Luo, Jordan R Hansford, Elizabeth Cairney, Carol Portwine, Christine Elser, Jonathan L Finlay, Kim E Nichols, Noa Alon, Ledia Brunga, Jo Anson, Wendy K Kohlmann, Kelvin César de Andrade, Payal P Khincha, Sharon A Savage, Joshua D Schiffman, Rosanna Weksberg, Trevor J Pugh, Anita Villani, Adam Shlien, Anna Goldenberg, David Malkin
Multiple Germline Events Contribute to Cancer Development in Patients with Li-Fraumeni Syndrome. Cancer research communications 3 (5) (2023)
Vallijah Subasri, Nicholas Light, Nisha Kanwar, Jack J Brzezinski, Ping Luo, Jordan R Hansford, Elizabeth Cairney, Carol Portwine, Christine Elser, Jonathan L Finlay, Kim E Nichols, Noa Alon, Ledia Brunga, Jo Anson, Wendy K Kohlmann, Kelvin César de Andrade, Payal P Khincha, Sharon A Savage, Joshua D Schiffman, Rosanna Weksberg, Trevor J Pugh, Anita Villani, Adam Shlien, Anna Goldenberg, David Malkin
Multiple Germline Events Contribute to Cancer Development in Patients with Li-Fraumeni Syndrome. Cancer research communications 3 (5) (2023)
Anirban Das, Nicholas R Fernandez, Adrian B Levine, Vanessa Bianchi, Lucie K Stengs, Jiil Chung, Logine Negm, Jose Rafael Dimayacyac, Yuan Chang, Liana Nobre, Ayse Bahar Ercan, Santiago Sánchez-Ramírez, Sumedha Sudhaman, Melissa Edwards, Larouche Valérie, David Samuel, An Van Damme, David Gass, David S Ziegler, Stefan S Bielack, Carl J Koschmann, Shayna Zelcer, Michal Yalon-Oren, Gadi Abede Campino, Tomasz Sarosiek, Kim E Nichols, Rebecca Loret De Mola, Kevin Bielamowicz, Magnus Sabel, Charlotta A Frojd, Matthew D Wood, Jason M Glover, Yi-Yen Lee, Magimairajan Issai Vanan, Jenny K Adamski, Sébastien Perreault, Omar Chamdine, Magnus Aassved Hjort, Michal Zápotocký, Fernando Carceller, Erin Wright, Ivana Fedorakova, Alexander Lossos, Ryuma Tanaka, Michael Philip Osborn, Deborah T Blumenthal, Melyssa Aronson, Ute Bartels, Annie Huang, Vijay Ramsawami, David Malkin, Adam Shlien, Anita Villani, Peter B Dirks, Trevor J Pugh, Gad A Getz, Yosef E Maruvka, Derek S Tsang, Birgit Betina Ertl-Wagner, Cynthia Hawkins, Eric Bouffet, Daniel A Morgenstern, Uri Tabori
Combined immunotherapy improves outcome for replication repair deficient (RRD) high-grade glioma failing anti-PD1 monotherapy: A report from the International RRD Consortium. Cancer discovery (2023)
Nicholas Light, Mehdi Layeghifard, Ayush Attery, Vallijah Subasri, Matthew Zatzman, Nathaniel D Anderson, Rupal Hatkar, Sasha Blay, David Chen, Ana Novokmet, Fabio Fuligni, James Tran, Richard de Borja, Himanshi Agarwal, Larissa Waldman, Lisa M Abegglen, Daniel Albertson, Jonathan L Finlay, Jordan R Hansford, Sam Behjati, Anita Villani, Moritz Gerstung, Ludmil B Alexandrov, Gino R Somers, Joshua D Schiffman, Varda Rotter, David Malkin, Adam Shlien
Germline TP53 mutations undergo copy number gain years prior to tumor diagnosis. Nature communications 14 (1) (2023)
Federico Comitani, Joshua O Nash, Sarah Cohen-Gogo, Astra I Chang, Timmy T Wen, Anant Maheshwari, Bipasha Goyal, Earvin S Tio, Kevin Tabatabaei, Chelsea Mayoh, Regis Zhao, Ben Ho, Ledia Brunga, John E G Lawrence, Petra Balogh, Adrienne M Flanagan, Sarah A Teichmann, Annie Huang, Vijay Ramsawami, Johann K Hitzler, Jonathan D Wasserman, Rebecca A Gladdy, Brendan C Dickson, Uri Tabori, Mark J Cowley, Sam Behjati, David Malkin, Anita Villani, Meredith S Irwin, Adam Shlien
Diagnostic classification of childhood cancer using multiscale transcriptomics. Nature medicine 29 (3) (2023)
Anita Villani, Scott Davidson, Nisha Kanwar, Winnie W Lo, Yisu Li, Sarah Cohen-Gogo, Fabio Fuligni, Lisa-Monique Edward, Nicholas Light, Mehdi Layeghifard, Ricardo Harripaul, Larissa Waldman, Bailey Gallinger, Federico Comitani, Ledia Brunga, Reid Hayes, Nathaniel D Anderson, Arun K Ramani, Kyoko E Yuki, Sasha Blay, Brittney Johnstone, Cara Inglese, Rawan Hammad, Catherine Goudie, Andrew Shuen, Jonathan D Wasserman, Rosemarie E Venier, Marianne Eliou, Miranda Lorenti, Carol Ann Ryan, Michael Braga, Meagan Gloven-Brown, Jianan Han, Maria Montero, Famida Spatare, James A Whitlock, Stephen W Scherer, Kathy Chun, Martin J Somerville, Cynthia Hawkins, Mohamed Abdelhaleem, Vijay Ramsawami, Gino R Somers, Lianna Kyriakopoulou, Johann K Hitzler, Mary Shago, Daniel A Morgenstern, Uri Tabori, Stephen Meyn, Meredith S Irwin, David Malkin, Adam Shlien
The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations. Nature cancer (2022)
Christopher D Steele, Ammal Abbasi, S M Ashiqul Islam, Amy L Bowes, Azhar Khandekar, Kerstin Haase, Shadi Hames-Fathi, Dolapo Ajayi, Annelien Verfaillie, Pawan Dhami, Alex McLatchie, Matt Lechner, Nicholas Light, Adam Shlien, David Malkin, Andrew Feber, Paula Z Proszek, Tom Lesluyes, Fredrik Mertens, Adrienne M Flanagan, Maxime Tarabichi, Peter Van Loo, Ludmil B Alexandrov, Nischalan Pillay
Signatures of copy number alterations in human cancer. Nature 606 (7916) (2022)
Anirban Das, Sumedha Sudhaman, Daniel A Morgenstern, Ailish Coblentz, Jiil Chung, Simone C Stone, Noor Said Alsafwani, Zhihui Amy Liu, Ola Abu Al Karsaneh, Shirin Soleimani, Hagay Ladany, David Chen, Matthew Zatzman, Vanja Cabric, Liana Nobre, Vanessa Bianchi, Melissa Edwards, Lauren C Sambira Nahum, Ayse Bahar Ercan, Arash Nabbi, Shlomi Constantini, Rina Dvir, Michal Yalon-Oren, Gadi Abebe Campino, Shani Caspi, Valerie Larouche, Alyssa Reddy, Michael Osborn, Gary Mason, Scott Lindhorst, Annika Bronsema, Magimairajan Issai Vanan, Enrico Opocher, Rebecca Loret De Mola, Magnus Sabel, Charlotta Frojd, David Sumerauer, David Samuel, Kristina Cole, Stefano Chiaravalli, Maura Massimino, Patrick Tomboc, David S Ziegler, Ben George, An Van Damme, Nobuko Hijiya, David Gass, Rose B McGee, Oz Mordechai, Daniel C Bowers, Theodore W Laetsch, Alexander Lossos, Deborah T Blumenthal, Tomasz Sarosiek, Lee Yi Yen, Jeffrey Knipstein, Anne E Bendel, Lindsey M Hoffman, Sandra Luna-Fineman, Stefanie Zimmermann, Isabelle Scheers, Kim E Nichols, Michal Zapotocky, Jordan R Hansford, John M Maris, Peter B Dirks, Michael D Taylor, Abhaya V Kulkarni, Manohar Shroff, Derek S Tsang, Anita Villani, Wei Xu, Melyssa Aronson, Carol Durno, Adam Shlien, David Malkin, Gad A Getz, Yosef E Maruvka, Pamela S Ohashi, Cynthia Hawkins, Trevor J Pugh, Eric Bouffet, Uri Tabori
Genomic predictors of response to PD-1 inhibition in children with germline DNA replication repair deficiency. Nature medicine 28 (1) (2022)
Anita Villani, Scott Davidson, Nisha Kanwar, Winnie W Lo, Yisu Li, Sarah Cohen-Gogo, Fabio Fuligni, Lisa-Monique Edward, Nicholas Light, Mehdi Layeghifard, Ricardo Harripaul, Larissa Waldman, Bailey Gallinger, Federico Comitani, Ledia Brunga, Reid Hayes, Nathaniel D Anderson, Arun K Ramani, Kyoko E Yuki, Sasha Blay, Brittney Johnstone, Cara Inglese, Rawan Hammad, Catherine Goudie, Andrew Shuen, Jonathan D Wasserman, Rosemarie E Venier, Marianne Eliou, Miranda Lorenti, Carol Ann Ryan, Michael Braga, Meagan Gloven-Brown, Jianan Han, Maria Montero, Famida Spatare, James A Whitlock, Stephen W Scherer, Kathy Chun, Martin J Somerville, Cynthia Hawkins, Mohamed Abdelhaleem, Vijay Ramsawami, Gino R Somers, Lianna Kyriakopoulou, Johann K Hitzler, Mary Shago, Daniel A Morgenstern, Uri Tabori, Stephen Meyn, Meredith S Irwin, David Malkin, Adam Shlien
The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations. Nature cancer 4 (2) (2022)
Matthew Zatzman, Fabio Fuligni, Ryan Ripsman, Tannu Suwal, Federico Comitani, Lisa-Monique Edward, Robert E Denroche, Gun Ho Jang, Faiyaz Notta, Steven Gallinger, Saravana P Selvanathan, Jeffrey A Toretsky, Matthew D Hellmann, Uri Tabori, Annie Huang, Adam Shlien
Widespread hypertranscription in aggressive human cancers. Science advances 8 (47) (2022)
Sarah Cohen-Gogo, Nisha Kanwar, Furqan Shaikh, Reto M Baertschiger, Adam Shlien, David Malkin, Juan Putra, Ailish C Coblentz, Anita Villani, Abha A Gupta, Daniel A Morgenstern
Response to Alpelisib in an Adolescent With PIK3CA -Mutated Metastatic Gastrointestinal Stromal Tumor. JCO precision oncology 6 (2022)
Bilal Marwa, Joerg Krueger, Elizabeth A Stephenson, Scott Davidson, David S Allan, Bartha Maria Knoppers, Ma'n Zawati, Patrick Sullivan, Adam Shlien, David Malkin, Conrad V Fernandez, Anita Villani
Ethical and Analytic Challenges With Genomic Sequencing of Relapsed Hematologic Malignancies Following Allogeneic Hematopoietic Stem-Cell Transplantation. JCO precision oncology 5 (2022)
Anita Villani, Scott Davidson, Nisha Kanwar, Winnie W Lo, Yisu Li, Sarah Cohen-Gogo, Fabio Fuligni, Lisa-Monique Edward, Nicholas Light, Mehdi Layeghifard, Ricardo Harripaul, Larissa Waldman, Bailey Gallinger, Federico Comitani, Ledia Brunga, Reid Hayes, Nathaniel D Anderson, Arun K Ramani, Kyoko E Yuki, Sasha Blay, Brittney Johnstone, Cara Inglese, Rawan Hammad, Catherine Goudie, Andrew Shuen, Jonathan D Wasserman, Rosemarie E Venier, Marianne Eliou, Miranda Lorenti, Carol Ann Ryan, Michael Braga, Meagan Gloven-Brown, Jianan Han, Maria Montero, Famida Spatare, James A Whitlock, Stephen W Scherer, Kathy Chun, Martin J Somerville, Cynthia Hawkins, Mohamed Abdelhaleem, Vijay Ramsawami, Gino R Somers, Lianna Kyriakopoulou, Johann K Hitzler, Mary Shago, Daniel A Morgenstern, Uri Tabori, Stephen Meyn, Meredith S Irwin, David Malkin, Adam Shlien
The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations. Nature cancer 4 (2) (2022)
Anita Villani, Scott Davidson, Nisha Kanwar, Winnie W Lo, Yisu Li, Sarah Cohen-Gogo, Fabio Fuligni, Lisa-Monique Edward, Nicholas Light, Mehdi Layeghifard, Ricardo Harripaul, Larissa Waldman, Bailey Gallinger, Federico Comitani, Ledia Brunga, Reid Hayes, Nathaniel D Anderson, Arun K Ramani, Kyoko E Yuki, Sasha Blay, Brittney Johnstone, Cara Inglese, Rawan Hammad, Catherine Goudie, Andrew Shuen, Jonathan D Wasserman, Rosemarie E Venier, Marianne Eliou, Miranda Lorenti, Carol Ann Ryan, Michael Braga, Meagan Gloven-Brown, Jianan Han, Maria Montero, Famida Spatare, James A Whitlock, Stephen W Scherer, Kathy Chun, Martin J Somerville, Cynthia Hawkins, Mohamed Abdelhaleem, Vijay Ramsawami, Gino R Somers, Lianna Kyriakopoulou, Johann K Hitzler, Mary Shago, Daniel A Morgenstern, Uri Tabori, Stephen Meyn, Meredith S Irwin, David Malkin, Adam Shlien
The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations. Nature cancer 4 (2) (2022)
Anita Villani, Scott Davidson, Nisha Kanwar, Winnie W Lo, Yisu Li, Sarah Cohen-Gogo, Fabio Fuligni, Lisa-Monique Edward, Nicholas Light, Mehdi Layeghifard, Ricardo Harripaul, Larissa Waldman, Bailey Gallinger, Federico Comitani, Ledia Brunga, Reid Hayes, Nathaniel D Anderson, Arun K Ramani, Kyoko E Yuki, Sasha Blay, Brittney Johnstone, Cara Inglese, Rawan Hammad, Catherine Goudie, Andrew Shuen, Jonathan D Wasserman, Rosemarie E Venier, Marianne Eliou, Miranda Lorenti, Carol Ann Ryan, Michael Braga, Meagan Gloven-Brown, Jianan Han, Maria Montero, Famida Spatare, James A Whitlock, Stephen W Scherer, Kathy Chun, Martin J Somerville, Cynthia Hawkins, Mohamed Abdelhaleem, Vijay Ramsawami, Gino R Somers, Lianna Kyriakopoulou, Johann K Hitzler, Mary Shago, Daniel A Morgenstern, Uri Tabori, Stephen Meyn, Meredith S Irwin, David Malkin, Adam Shlien
The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations. Nature cancer 4 (2) (2022)
Nathaniel D Anderson, Yael Babichev, Fabio Fuligni, Federico Comitani, Mehdi Layeghifard, Rosemarie E Venier, Stefan C Dentro, Anant Maheshwari, Sheena Guram, Claire Wunker, J Drew Thompson, Kyoko E Yuki, Huayun Hou, Matthew Zatzman, Nicholas Light, Marcus Q Bernardini, Jay S Wunder, Irene L Andrulis, Peter Ferguson, Albiruni R Abdul Razak, Carol J Swallow, James J Dowling, Rima S Al-Awar, Richard Marcellus, Marjan Rouzbahman, Moritz Gerstung, Daniel Durocher, Ludmil B Alexandrov, Brendan C Dickson, Rebecca A Gladdy, Adam Shlien
Lineage-defined leiomyosarcoma subtypes emerge years before diagnosis and determine patient survival. Nature communications 12 (1) (2021)
Nathaniel D Anderson, Richard J de Borja, Matthew D Young, Fabio Fuligni, Andrej Rosic, Nicola D Roberts, Simon Hajjar, Mehdi Layeghifard, Ana Novokmet, Paul E Kowalski, Matthew Anaka, Scott Davidson, Mehdi Zarrei, Badr Id Said, L Christine Schreiner, Remi Marchand, Joseph Sitter, Nalan Gokgoz, Ledia Brunga, Garrett T Graham, Anthony Fullam, Nischalan Pillay, Jeffrey A Toretsky, Akihiko Yoshida, Tatsuhiro Shibata, Markus Metzler, Gino R Somers, Stephen W Scherer, Adrienne M Flanagan, Peter J Campbell, Joshua D Schiffman, Mary Shago, Ludmil B Alexandrov, Jay S Wunder, Irene L Andrulis, David Malkin, Sam Behjati, Adam Shlien
Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors. Science (New York, N.Y.) 361 (6405) (2018)