Krishna K Niyogi (K K Niyogi)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 55

Top Topics

Gene Expression

Arabidopsis Thaliana

Top Venues

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Science (New York, N.Y.)

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Roberta Croce, Elizabete Carmo-Silva, Young B Cho, Maria Ermakova, Jeremy Harbinson, Tracy Lawson, Alistair J McCormick, Krishna K Niyogi, Donald R Ort, Dhruv Patel-Tupper, Paolo Pesaresi, Christine A Raines, Andreas P M Weber, Xin-Guang Zhu
Perspectives on improving photosynthesis to increase crop yield. The Plant cell (2024)
Dhruv Patel-Tupper, Armen Kelikian, Anna Leipertz, Nina Maryn, Michelle Tjahjadi, Nicholas G Karavolias, Myeong-Je Cho, Krishna K Niyogi
Multiplexed CRISPR-Cas9 mutagenesis of rice PSBS1 noncoding sequences for transgene-free overexpression. Science advances 10 (23) (2024)
Tim L Jeffers, Samuel Owen Purvine, Carrie D Nicora, Ryan McCombs, Shivani Upadhyaya, Adrien Stroumza, Ken Whang, Sean D Gallaher, Alice C Dohnalkova, Sabeeha S Merchant, Mary S Lipton, Krishna K Niyogi, Melissa S Roth
Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis. Nature communications 15 (1) (2024)
Christopher W Gee, Johan Andersen-Ranberg, Ethan Boynton, Rachel Z Rosen, Danielle Jorgens, Patricia Grob, Hoi-Ying N Holman, Krishna K Niyogi
Implicating the red body of Nannochloropsis in forming the recalcitrant cell wall polymer algaenan. Nature communications 15 (1) (2024)
Christopher W Gee, Johan Andersen-Ranberg, Ethan Boynton, Rachel Z Rosen, Danielle Jorgens, Patricia Grob, Hoi-Ying N Holman, Krishna K Niyogi
Implicating the red body of Nannochloropsis in forming the recalcitrant cell wall polymer algaenan. Nature communications 15 (1) (2024)
Mimi Broderson, Krishna K Niyogi, Masakazu Iwai
Macroscale structural changes of thylakoid architecture during high light acclimation in Chlamydomonas reinhardtii. Photosynthesis research (2024)
Nicolas Grosjean, Estella F Yee, Desigan Kumaran, Kriti Chopra, Macon Abernathy, Sandeep Biswas, James Byrnes, Dale F Kreitler, Jan-Fang Cheng, Agnidipta Ghosh, Steven C Almo, Masakazu Iwai, Krishna K Niyogi, Himadri B Pakrasi, Ritimukta Sarangi, Hubertus J J van Dam, Lin Yang, Ian K Blaby, Crysten E Blaby-Haas
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nature communications 15 (1) (2024)
Nicolas Grosjean, Estella F Yee, Desigan Kumaran, Kriti Chopra, Macon Abernathy, Sandeep Biswas, James Byrnes, Dale F Kreitler, Jan-Fang Cheng, Agnidipta Ghosh, Steven C Almo, Masakazu Iwai, Krishna K Niyogi, Himadri B Pakrasi, Ritimukta Sarangi, Hubertus J J van Dam, Lin Yang, Ian K Blaby, Crysten E Blaby-Haas
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nature communications 15 (1) (2024)
Tim L Jeffers, Samuel Owen Purvine, Carrie D Nicora, Ryan McCombs, Shivani Upadhyaya, Adrien Stroumza, Ken Whang, Sean D Gallaher, Alice C Dohnalkova, Sabeeha S Merchant, Mary S Lipton, Krishna K Niyogi, Melissa S Roth
Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis. Nature communications 15 (1) (2024)
Dhruv Patel-Tupper, Armen Kelikian, Anna Leipertz, Nina Maryn, Michelle Tjahjadi, Nicholas G Karavolias, Myeong-Je Cho, Krishna K Niyogi
Multiplexed CRISPR-Cas9 mutagenesis of rice PSBS1 noncoding sequences for transgene-free overexpression. Science advances 10 (23) (2024)
Tim L Jeffers, Samuel Owen Purvine, Carrie D Nicora, Ryan McCombs, Shivani Upadhyaya, Adrien Stroumza, Ken Whang, Sean D Gallaher, Alice C Dohnalkova, Sabeeha S Merchant, Mary S Lipton, Krishna K Niyogi, Melissa S Roth
Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis. Nature communications 15 (1) (2024)
Christopher W Gee, Johan Andersen-Ranberg, Ethan Boynton, Rachel Z Rosen, Danielle Jorgens, Patricia Grob, Hoi-Ying N Holman, Krishna K Niyogi
Implicating the red body of Nannochloropsis in forming the recalcitrant cell wall polymer algaenan. Nature communications 15 (1) (2024)
Dhruv Patel-Tupper, Armen Kelikian, Anna Leipertz, Nina Maryn, Michelle Tjahjadi, Nicholas G Karavolias, Myeong-Je Cho, Krishna K Niyogi
Multiplexed CRISPR-Cas9 mutagenesis of rice PSBS1 noncoding sequences for transgene-free overexpression. Science advances 10 (23) (2024)
Nicolas Grosjean, Estella F Yee, Desigan Kumaran, Kriti Chopra, Macon Abernathy, Sandeep Biswas, James Byrnes, Dale F Kreitler, Jan-Fang Cheng, Agnidipta Ghosh, Steven C Almo, Masakazu Iwai, Krishna K Niyogi, Himadri B Pakrasi, Ritimukta Sarangi, Hubertus J J van Dam, Lin Yang, Ian K Blaby, Crysten E Blaby-Haas
A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nature communications 15 (1) (2024)
Amanda P De Souza, Steven J Burgess, Lynn Doran, Lusya Manukyan, Jeffrey Hansen, Nina Maryn, Lauribel Leonelli, Krishna K Niyogi, Stephen P Long
Response to Comments on "Soybean photosynthesis and crop yield is improved by accelerating recovery from photoprotection". Science (New York, N.Y.) 379 (6634) (2023)
Amanda P De Souza, Steven J Burgess, Lynn Doran, Lusya Manukyan, Jeffrey Hansen, Nina Maryn, Lauribel Leonelli, Krishna K Niyogi, Stephen P Long
Response to Comments on "Soybean photosynthesis and crop yield is improved by accelerating recovery from photoprotection". Science (New York, N.Y.) 379 (6634) (2023)
Amanda P De Souza, Steven J Burgess, Lynn Doran, Lusya Manukyan, Jeffrey Hansen, Nina Maryn, Lauribel Leonelli, Krishna K Niyogi, Stephen P Long
Response to Comments on "Soybean photosynthesis and crop yield is improved by accelerating recovery from photoprotection". Science (New York, N.Y.) 379 (6634) (2023)
Christopher R Baker, Dhruv Patel-Tupper, Benjamin J Cole, Lindsey G Ching, Oliver Dautermann, Armen C Kelikian, Cayci Allison, Julie Pedraza, Julie Sievert, Aivett Bilbao, Joon-Yong Lee, Young-Mo Kim, Jennifer E Kyle, Kent J Bloodsworth, Vanessa Paurus, Kim K Hixson, Robert Hutmacher, Jeffery A Dahlberg, Peggy G Lemaux, Krishna K Niyogi
Metabolomic, photoprotective, and photosynthetic acclimatory responses to post-flowering drought in sorghum. Plant direct 7 (11) (2023)
Audrey Short, Thomas P Fay, Thien Crisanto, Ratul Mangal, Krishna K Niyogi, David T Limmer, Graham R Fleming
Kinetics of the xanthophyll cycle and its role in photoprotective memory and response. Nature communications 14 (1) (2023)
Giorgio Perin, Alessandra Bellan, Tim Michelberger, Dagmar Lyska, Setsuko Wakao, Krishna K Niyogi, Tomas Morosinotto
Modulation of xanthophyll cycle impacts biomass productivity in the marine microalga Nannochloropsis . Proceedings of the National Academy of Sciences of the United States of America 120 (25) (2023)
Jing Tsong Teh, Verena Leitz, Victoria J C Holzer, Daniel Neusius, Giada Marino, Tobias Meitzel, José G García-Cerdán, Rachel M Dent, Krishna K Niyogi, Peter Geigenberger, Joerg Nickelsen
NTRC regulates CP12 to activate Calvin-Benson cycle during cold acclimation. Proceedings of the National Academy of Sciences of the United States of America 120 (33) (2023)
Nicholas G Karavolias, Dhruv Patel-Tupper, Kyungyong Seong, Michelle Tjahjadi, Gloria-Alexandra Gueorguieva, Jaclyn Tanaka, Ana Gallegos Cruz, Samantha Liebermann, Lillian Litvak, Douglas Dahlbeck, Myeong-Je Cho, Krishna K Niyogi, Brian J Staskawicz
Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance. Plant physiology (2023)
Roberto Espinoza-Corral, Masakazu Iwai, Tomáš Zavřel, Sigal Lechno-Yossef, Markus Sutter, Jan Cerveny, Krishna K Niyogi, Cheryl A Kerfeld
Phycobilisome protein ApcG interacts with photosystem II and regulates energy transfer in Synechocystis. Plant physiology (2023)
Amanda P De Souza, Steven J Burgess, Lynn Doran, Lusya Manukyan, Jeffrey Hansen, Nina Maryn, Lauribel Leonelli, Krishna K Niyogi, Stephen P Long
Response to Comments on "Soybean photosynthesis and crop yield is improved by accelerating recovery from photoprotection". Science (New York, N.Y.) 379 (6634) (2023)
Christopher R Baker, Jean Christophe Cocuron, Ana Paula Alonso, Krishna K Niyogi
Time-resolved systems analysis of the induction of high photosynthetic capacity in Arabidopsis during acclimation to high light. The New phytologist (2023)
Setsuko Wakao, Krishna K Niyogi
Chlamydomonas as a model for reactive oxygen species signaling and thiol redox regulation in the green lineage. Plant physiology 187 (2) (2022)
Friedrich Fauser, Josep Vilarrasa-Blasi, Masayuki Onishi, Silvia Ramundo, Weronika Patena, Matthew Millican, Jacqueline Osaki, Charlotte Philp, Matthew Nemeth, Patrice A Salomé, Xiaobo Li, Setsuko Wakao, Rick G Kim, Yuval Kaye, Arthur R Grossman, Krishna K Niyogi, Sabeeha S Merchant, Sean R Cutler, Peter Walter, José R Dinneny, Martin C Jonikas, Robert E Jinkerson
Systematic characterization of gene function in the photosynthetic alga Chlamydomonas reinhardtii. Nature genetics 54 (5) (2022)
Amanda P De Souza, Steven J Burgess, Lynn Doran, Jeffrey Hansen, Lusya Manukyan, Nina Maryn, Dhananjay Gotarkar, Lauriebeth Leonelli, Krishna K Niyogi, Stephen P Long
Soybean photosynthesis and crop yield are improved by accelerating recovery from photoprotection. Science (New York, N.Y.) 377 (6608) (2022)
Collin J Steen, Adrien Burlacot, Audrey H Short, Krishna K Niyogi, Graham R Fleming
Interplay between LHCSR proteins and state transitions governs the NPQ response in Chlamydomonas during light fluctuations. Plant, cell & environment 45 (8) (2022)
Douglas J Orr, Alice K J Robijns, Christopher R Baker, Krishna K Niyogi, Elizabete Carmo-Silva
Dynamics of Rubisco regulation by sugar phosphate derivatives and their phosphatases. Journal of experimental botany (2022)
Audrey H Short, Thomas P Fay, Thien Crisanto, Johanna Hall, Collin J Steen, Krishna K Niyogi, David T Limmer, Graham R Fleming
Xanthophyll-cycle based model of the rapid photoprotection of Nannochloropsis in response to regular and irregular light/dark sequences. The Journal of chemical physics 156 (20) (2022)
Setsuko Wakao, Patrick M Shih, Katharine Guan, Wendy Schackwitz, Joshua Ye, Dhruv Patel-Tupper, Robert M Shih, Rachel M Dent, Mansi Chovatia, Aditi Sharma, Joel Martin, Chia-Lin Wei, Krishna K Niyogi
Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. PLoS genetics 17 (9) (2021)
Cheyenne M Anderson, Erin M Mattoon, Ningning Zhang, Eric Becker, William McHargue, Jiani Yang, Dhruv Patel-Tupper, Oliver Dautermann, Scott A M McAdam, Tonantzin Tarin, Sunita Pathak, Tom J Avenson, Jeffrey Berry, Maxwell Braud, Krishna K Niyogi, Margaret Wilson, Dmitri A Nusinow, Rodrigo Vargas, Kirk James Czymmek, Andrea L Eveland, Ru Zhang
High light and temperature reduce photosynthetic efficiency through different mechanisms in the C4 model Setaria viridis. Communications biology 4 (1) (2021)
Simon Alamos, Armando Reimer, Krishna K Niyogi, Hernan G Garcia
Quantitative imaging of RNA polymerase II activity in plants reveals the single-cell basis of tissue-wide transcriptional dynamics. Nature plants 7 (8) (2021)
Sean D Gallaher, Rory J Craig, Iniyan Ganesan, Samuel Owen Purvine, Sean R McCorkle, Jerry W Jenkins, Daniela Strenkert, Lital Davidi, Melissa S Roth, Tim L Jeffers, Mary S Lipton, Krishna K Niyogi, Jeremy Schmutz, Steven M Theg, Crysten E Blaby-Haas, Sabeeha S Merchant
Widespread polycistronic gene expression in green algae. Proceedings of the National Academy of Sciences of the United States of America 118 (7) (2021)
Yandu Lu, Qinhua Gan, Masakazu Iwai, Alessandro Alboresi, Adrien Burlacot, Oliver Dautermann, Hiroko Takahashi, Thien Crisanto, Gilles Peltier, Tomas Morosinotto, Anastasios Melis, Krishna K Niyogi
Role of an ancient light-harvesting protein of PSI in light absorption and photoprotection. Nature communications 12 (1) (2021)
Eric A Arsenault, Yusuke Yoneda, Masakazu Iwai, Krishna K Niyogi, Graham R Fleming
Vibronic mixing enables ultrafast energy flow in light-harvesting complex II. Nature communications 11 (1) (2020)
José G García-Cerdán, Eva M Schmid, Tomomi Takeuchi, Ian McRae, Kent L McDonald, Nichakarn Yordduangjun, Ahmed M Hassan, Patricia Grob, C Shan Xu, Harald F Hess, Daniel A Fletcher, Eva Nogales, Krishna K Niyogi
Chloroplast Sec14-like 1 (CPSFL1) is essential for normal chloroplast development and affects carotenoid accumulation in Chlamydomonas. Proceedings of the National Academy of Sciences of the United States of America 117 (22) (2020)
Alexander P Hertle, José G García-Cerdán, Ute Armbruster, Robert Shih, Jimmy J Lee, Winnie Wong, Krishna K Niyogi
A Sec14 domain protein is required for photoautotrophic growth and chloroplast vesicle formation in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 117 (16) (2020)
Cynthia L Amstutz, Rikard Fristedt, Alex Schultink, Sabeeha S Merchant, Krishna K Niyogi, Alizée Malnoë
An atypical short-chain dehydrogenase-reductase functions in the relaxation of photoprotective qH in Arabidopsis. Nature plants 6 (2) (2020)
Oliver Dautermann, Dagmar Lyska, Johan Andersen-Ranberg, M Becker, Janine Fröhlich-Nowoisky, H Gartmann, L C Krämer, K Mayr, D Pieper, L M Rij, Heidi M L Wipf, Krishna K Niyogi, Martin Lohr
An algal enzyme required for biosynthesis of the most abundant marine carotenoids. Science advances 6 (10) (2020)
Eric A Arsenault, Yusuke Yoneda, Masakazu Iwai, Krishna K Niyogi, Graham R Fleming
The role of mixed vibronic Qy-Qx states in green light absorption of light-harvesting complex II. Nature communications 11 (1) (2020)
Stéphane T Gabilly, Christopher R Baker, Setsuko Wakao, Thien Crisanto, Katharine Guan, Ke Bi, Elodie Guiet, Carmela R Guadagno, Krishna K Niyogi
Regulation of photoprotection gene expression in Chlamydomonas by a putative E3 ubiquitin ligase complex and a homolog of CONSTANS. Proceedings of the National Academy of Sciences of the United States of America 116 (35) (2019)
Melissa S Roth, Daniel J Westcott, Masakazu Iwai, Krishna K Niyogi
Hexokinase is necessary for glucose-mediated photosynthesis repression and lipid accumulation in a green alga. Communications biology 2 (2019)
Nelle Varoquaux, Benjamin Cole, Cheng Gao, Grady Pierroz, Christopher R Baker, Dhruv Patel-Tupper, Mary Madera, Tim Jeffers, Joy Hollingsworth, Julie Sievert, Yuko Yoshinaga, Judith A Owiti, Vasanth R Singan, Stephanie DeGraaf, Ling Xu, Matthew J Blow, Maria J Harrison, Axel Visel, Christer Jansson, Krishna K Niyogi, Robert Hutmacher, Devin Coleman-Derr, Ronan C O'Malley, John W Taylor, Jeffery Dahlberg, John P Vogel, Peggy G Lemaux, Elizabeth Purdom
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses. Proceedings of the National Academy of Sciences of the United States of America (2019)
José G García-Cerdán, Ariel L Furst, Kent L McDonald, Danja Schünemann, Matthew B Francis, Krishna K Niyogi
A thylakoid membrane-bound and redox-active rubredoxin (RBD1) functions in de novo assembly and repair of photosystem II. Proceedings of the National Academy of Sciences of the United States of America 116 (33) (2019)
Soomin Park, Collin J Steen, Dagmar Lyska, Alexandra L Fischer, Benjamin Endelman, Masakazu Iwai, Krishna K Niyogi, Graham R Fleming
Chlorophyll-carotenoid excitation energy transfer and charge transfer in Nannochloropsis oceanica for the regulation of photosynthesis. Proceedings of the National Academy of Sciences of the United States of America 116 (9) (2019)
Melissa S Roth, Sean D Gallaher, Daniel J Westcott, Masakazu Iwai, Katherine B Louie, Maria Mueller, Andreas Walter, Fatima Foflonker, Benjamin P Bowen, Nassim N Ataii, Junha Song, Jian-Hua Chen, Crysten E Blaby-Haas, Carolyn A Larabell, Manfred Auer, Trent R Northen, Sabeeha S Merchant, Krishna K Niyogi
Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. The Plant cell 31 (3) (2019)
Tyler M Wittkopp, Shai I Saroussi, Wenqiang Yang, Xenie Johnson, Rick G Kim, Mark L Heinnickel, James J Russell, Witchukorn Phuthong, Rachel M Dent, Corey D Broeckling, Graham Peers, Martin Lohr, Francis-André Wollman, Krishna K Niyogi, Arthur R Grossman
GreenCut protein CPLD49 of Chlamydomonas reinhardtii associates with thylakoid membranes and is required for cytochrome b6 f complex accumulation. The Plant journal : for cell and molecular biology 94 (6) (2018)
Masakazu Iwai, Patricia Grob, Anthony T Iavarone, Eva Nogales, Krishna K Niyogi
A unique supramolecular organization of photosystem I in the moss Physcomitrella patens. Nature plants 4 (11) (2018)
Alizée Malnoë, Alex Schultink, Sanya Shahrasbi, Dominique Rumeau, Michel Havaux, Krishna K Niyogi
The Plastid Lipocalin LCNP Is Required for Sustained Photoprotective Energy Dissipation in Arabidopsis. The Plant cell 30 (1) (2017)
Michelle Leuenberger, Jonathan M Morris, Arnold M Chan, Lauriebeth Leonelli, Krishna K Niyogi, Graham R Fleming
Dissecting and modeling zeaxanthin- and lutein-dependent nonphotochemical quenching in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 114 (33) (2017)
Christopher W Gee, Krishna K Niyogi
The carbonic anhydrase CAH1 is an essential component of the carbon-concentrating mechanism in Nannochloropsis oceanica. Proceedings of the National Academy of Sciences of the United States of America 114 (17) (2017)
Melissa S Roth, Shawn J Cokus, Sean D Gallaher, Andreas Walter, David Lopez, Erika Erickson, Benjamin Endelman, Daniel Westcott, Carolyn A Larabell, Sabeeha S Merchant, Matteo Pellegrini, Krishna K Niyogi
Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production. Proceedings of the National Academy of Sciences of the United States of America 114 (21) (2017)
Lauriebeth Leonelli, Matthew D Brooks, Krishna K Niyogi
Engineering the lutein epoxide cycle into Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 114 (33) (2017)