Alexej Abyzov

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 36

Top Venues

Nature genetics

bioRxiv : the preprint server for biology

Science (New York, N.Y.)

Nature neuroscience

Mayo Clinic

Northeastern University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Mayo Clinic Jan 05 2014

United States

Assistant Professor of Biomedical Informatics :: Health Sciences Research

Yale University Jan 01 2013 - Jan 05 2014

United States

Research Scientist :: Molecular Biophysics and Biochemistry

Yale University May 05 2008 - Dec 31 2012

United States

PostDoc :: Molecular Biophysics and Biochemistry

Education History

Northeastern University Sep 07 2002 - May 05 2008

United States

PHD :: Biology

Moscow Institute of Physics and Technology Sep 01 2000 - Jun 30 2002

Russia

MSC :: General and Applied Physics

Moscow Institute of Physics and Technology Sep 01 1996 - Jun 30 2000

Russia

BSC :: General and Applied Physics

Publications

Yifan Wang, Liana Fasching, Feinan Wu, Anita Huttner, Sabina Berretta, Rosalinda Roberts, James F Leckman, Alexej Abyzov, Flora M Vaccarino
Interneuron loss and microglia activation by transcriptome analyses in the basal ganglia of Tourette syndrome. bioRxiv : the preprint server for biology (2024)
Yeongjun Jang, Livia Tomasini, Taejeong Bae, Anna Szekely, Flora M Vaccarino, Alexej Abyzov
Transgenerational transmission of post-zygotic mutations suggests symmetric contribution of first two blastomeres to human germline. bioRxiv : the preprint server for biology (2024)
Soraya Scuderi, Tae-Yun Kang, Alexandre Jourdon, Liang Yang, Feinan Wu, Alex Nelson, George M Anderson, Jessica Mariani, Vivekananda Sarangi, Alexej Abyzov, Andre Levchenko, Flora M Vaccarino
Specification of human regional brain lineages using orthogonal gradients of WNT and SHH in organoids. bioRxiv : the preprint server for biology (2024)
Arijit Panda, Milovan Šuvakov, Helga Thorvaldsdottir, Jill P Mesirov, James T Robinson, Alexej Abyzov
Genome-wide analysis and visualization of copy number with CNVpytor in igv.js. Bioinformatics (Oxford, England) 40 (8) (2024)
Yifan Wang, Liana Fasching, Feinan Wu, Anita Huttner, Sabina Berretta, Rosalinda Roberts, James F Leckman, Alexej Abyzov, Flora M Vaccarino
Interneuron loss and microglia activation by transcriptome analyses in the basal ganglia of Tourette syndrome. bioRxiv : the preprint server for biology (2024)
Yeongjun Jang, Livia Tomasini, Taejeong Bae, Anna Szekely, Flora M Vaccarino, Alexej Abyzov
Transgenerational transmission of post-zygotic mutations suggests symmetric contribution of first two blastomeres to human germline. bioRxiv : the preprint server for biology (2024)
Yifan Wang, Liana Fasching, Feinan Wu, Anita Huttner, Sabina Berretta, Rosalinda Roberts, James F Leckman, Alexej Abyzov, Flora M Vaccarino
Interneuron loss and microglia activation by transcriptome analyses in the basal ganglia of Tourette syndrome. bioRxiv : the preprint server for biology (2024)
Arijit Panda, Milovan Šuvakov, Helga Thorvaldsdottir, Jill P Mesirov, James T Robinson, Alexej Abyzov
Genome-wide analysis and visualization of copy number with CNVpytor in igv.js. Bioinformatics (Oxford, England) 40 (8) (2024)
Arijit Panda, Milovan Šuvakov, Helga Thorvaldsdottir, Jill P Mesirov, James T Robinson, Alexej Abyzov
Genome-wide analysis and visualization of copy number with CNVpytor in igv.js. Bioinformatics (Oxford, England) 40 (8) (2024)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
McKinzie A Garrison, Yeongjun Jang, Taejeong Bae, Adriana Cherskov, Sarah B Emery, Liana Fasching, Attila Jones, John B Moldovan, Cindy Molitor, Sirisha Pochareddy, Mette A Peters, Joo-Heon Shin, Yifan Wang, Xiaoxu Yang, Schahram Akbarian, Andrew Chess, Fred H Gage, Joseph G Gleeson, Jeffrey M Kidd, Michael J McConnell, Ryan E Mills, John V Moran, Peter J Park, Nenad Sestan, Alexander Eckehart Urban, Flora M Vaccarino, Christopher A Walsh, Daniel R Weinberger, Sarah J Wheelan, Alexej Abyzov, null null
Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases. Scientific data 10 (1) (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics (2023)
Xiaoxu Yang, Xin Xu, Martin W Breuss, Danny Antaki, Laurel L Ball, Changuk Chung, Jiawei Shen, Chen Li, Renee D George, Yifan Wang, Taejeong Bae, Yuhe Cheng, Alexej Abyzov, Liping Wei, Ludmil B Alexandrov, Jonathan L Sebat, null null, Joseph G Gleeson
Control-independent mosaic single nucleotide variant detection with DeepMosaic. Nature biotechnology (2023)
Xiaowei Zhu, Bo Zhou, Reenal Pattni, Kelly Gleason, Chunfeng Tan, Agnieszka Kalinowski, Steven A Sloan, Anna-Sophie Fiston-Lavier, Jessica Mariani, Dmitri Petrov, Ben A Barres, Laramie E Duncan, Alexej Abyzov, Hannes Vogel, null null, John V Moran, Flora M Vaccarino, Carol A Tamminga, Douglas F Levinson, Alexander Eckehart Urban
Author Correction: Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia. Nature neuroscience (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics (2023)
Davide Capauto, Yifan Wang, Feinan Wu, Scott Norton, Jessica Mariani, Fumitaka Inoue, Gregory E Crawford, null null, Nadav Ahituv, Alexej Abyzov, Flora M Vaccarino
Characterization of enhancer activity in early human neurodevelopment using Massively parallel reporter assay (MPRA) and forebrain organoids. bioRxiv : the preprint server for biology (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
Alexandre Jourdon, Feinan Wu, Jessica Mariani, Davide Capauto, Scott S Norton, Livia Tomasini, Anahita Amiri, Milovan Suvakov, Jeremy D Schreiner, Yeongjun Jang, Arijit Panda, Cindy Khanh Nguyen, Elise M Cummings, Gloria Han, Kelly Powell, Anna Szekely, James Charles McPartland, Kevin Pelphrey, Katarzyna Chawarska, Pamela Ventola, Alexej Abyzov, Flora M Vaccarino
Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis. Nature neuroscience (2023)
Changuk Chung, Xiaoxu Yang, Taejeong Bae, Keng Ioi Vong, Swapnil Mittal, Catharina Donkels, H Westley Phillips, Zhen Li, Ashley P L Marsh, Martin W Breuss, Laurel L Ball, Camila Araújo Bernardino Garcia, Renee D George, Jing Gu, Mingchu Xu, Chelsea Barrows, Kiely N James, Valentina Stanley, Anna S Nidhiry, Sami Khoury, Gabrielle Howe, Emily Riley, Xin Xu, Brett Copeland, Yifan Wang, Se-Hoon Kim, Hoon-Chul Kang, Andreas Schulze-Bonhage, Carola A Haas, Horst Urbach, Marco Prinz, David D Limbrick, Christina A Gurnett, Matthew D Smyth, Shifteh Sattar, Mark Nespeca, David D Gonda, Katsumi Imai, Yukitoshi Takahashi, Hsin-Hung Chen, Jin-Wu Tsai, Valerio Conti, Renzo Guerrini, Orrin Devinsky, Wilson Araújo da Silva Junior, Helio R Machado, Gary W Mathern, Alexej Abyzov, Sara Baldassari, Stéphanie Baulac, null null, null null, Joseph G Gleeson
Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development. Nature genetics 55 (2) (2023)
Alexandre Jourdon, Feinan Wu, Jessica Mariani, Davide Capauto, Scott S Norton, Livia Tomasini, Anahita Amiri, Milovan Suvakov, Jeremy D Schreiner, Yeongjun Jang, Arijit Panda, Cindy Khanh Nguyen, Elise M Cummings, Gloria Han, Kelly Powell, Anna Szekely, James Charles McPartland, Kevin Pelphrey, Katarzyna Chawarska, Pamela Ventola, Alexej Abyzov, Flora M Vaccarino
Author Correction: Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis. Nature neuroscience (2023)
Taejeong Bae, Liana Fasching, Yifan Wang, Joo-Heon Shin, Milovan Šuvakov, Yeongjun Jang, Scott S Norton, Caroline Dias, Jessica Mariani, Alexandre Jourdon, Feinan Wu, Arijit Panda, Reenal Pattni, Yasmine Chahine, Rebecca Yeh, Rosalinda C Roberts, Anita Huttner, Joel E Kleinman, Thomas M Hyde, Richard E Straub, Christopher A Walsh, null null, Alexander Eckehart Urban, James Frederick Leckman, Daniel R Weinberger, Flora M Vaccarino, Alexej Abyzov
Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability. Science (New York, N.Y.) 377 (6605) (2022)
Connor Yanchus, Kristen L Drucker, Thomas M Kollmeyer, Ricky Tsai, Warren Winick-Ng, Minggao Liang, Ahmad Malik, Judy Pawling, Silvana B De Lorenzo, Asma Ali, Paul A Decker, Matt L Kosel, Arijit Panda, Khalid N Al-Zahrani, Lingyan Jiang, Jared W L Browning, Chris Lowden, Michael Geuenich, J Javier Hernandez, Jessica T Gosio, Musaddeque Ahmed, Sampath Kumar Loganathan, Jacob Berman, Daniel Trcka, Kulandaimanuvel Antony Michealraj, Jerome Fortin, Brittany Carson, Ethan W Hollingsworth, Sandra Jacinto, Parisa Mazrooei, Lily Zhou, Andrew J Elia, Mathieu Lupien, Housheng Hansen He, Daniel J Murphy, Liguo Wang, Alexej Abyzov, James W Dennis, Philipp G Maass, Kieran Campbell, Michael D Wilson, Daniel H Lachance, Margaret Wrensch, John Wiencke, Tak Wah Mak, Len A Pennacchio, Diane E Dickel, Axel Visel, Jeffrey L Wrana, Michael D Taylor, Gelareh Zadeh, Peter B Dirks, Jeanette E Eckel-Passow, Liliana Attisano, Ana Pombo, Cristiane M Ida, Evgeny Z Kvon, Robert B Jenkins, Daniel Schramek
A noncoding single-nucleotide polymorphism at 8q24 drives IDH1 -mutant glioma formation. Science (New York, N.Y.) 378 (6615) (2022)
Xiaowei Zhu, Bo Zhou, Reenal Pattni, Kelly Gleason, Chunfeng Tan, Agnieszka Kalinowski, Steven A Sloan, Anna-Sophie Fiston-Lavier, Jessica Mariani, Dmitri Petrov, Ben A Barres, Laramie E Duncan, Alexej Abyzov, Hannes Vogel, null null, John V Moran, Flora M Vaccarino, Carol A Tamminga, Douglas F Levinson, Alexander Eckehart Urban
Machine learning reveals bilateral distribution of somatic L1 insertions in human neurons and glia. Nature neuroscience 24 (2) (2021)
Sara Bizzotto, Yanmei Dou, Javier Ganz, Ryan N Doan, Minseok Kwon, Craig L Bohrson, Sonia Nan Kim, Taejeong Bae, Alexej Abyzov, null null, Peter J Park, Christopher A Walsh
Landmarks of human embryonic development inscribed in somatic mutations. Science (New York, N.Y.) 371 (6535) (2021)
Liana Fasching, Yeongjun Jang, Simone Tomasi, Jeremy Schreiner, Livia Tomasini, Melanie V Brady, Taejeong Bae, Vivekananda Sarangi, Nikolaos Vasmatzis, Yifan Wang, Anna Szekely, Thomas V Fernandez, James F Leckman, Alexej Abyzov, Flora M Vaccarino
Early developmental asymmetries in cell lineage trees in living individuals. Science (New York, N.Y.) 371 (6535) (2021)
Yifan Wang, Taejeong Bae, Jeremy Thorpe, Maxwell A Sherman, Attila G Jones, Sean Cho, Kenneth Daily, Yanmei Dou, Javier Ganz, Alon Galor, Irene Lobon, Reenal Pattni, Chaggai Rosenbluh, Simone Tomasi, Livia Tomasini, Xiaoxu Yang, Bo Zhou, Schahram Akbarian, Laurel L Ball, Sara Bizzotto, Sarah B Emery, Ryan Doan, Liana Fasching, Yeongjun Jang, David Juan, Esther Lizano, Lovelace J Luquette, John B Moldovan, Rujuta Narurkar, Matthew T Oetjens, Rachel E Rodin, Shobana Sekar, Joo Heon Shin, Eduardo Soriano, Richard E Straub, Weichen Zhou, Andrew Chess, Joseph G Gleeson, Tomas Marquès-Bonet, Peter J Park, Mette A Peters, Jonathan Pevsner, Christopher A Walsh, Daniel R Weinberger, null null, Flora M Vaccarino, John V Moran, Alexander E Urban, Jeffrey M Kidd, Ryan E Mills, Alexej Abyzov
Comprehensive identification of somatic nucleotide variants in human brain tissue. Genome biology 22 (1) (2021)
Vivekananda Sarangi, Alexandre Jourdon, Taejeong Bae, Arijit Panda, Flora Vaccarino, Alexej Abyzov
SCELLECTOR: ranking amplification bias in single cells using shallow sequencing. BMC bioinformatics 21 (1) (2020)
Bo Zhou, Steve S Ho, Stephanie U Greer, Xiaowei Zhu, John M Bell, Joseph G Arthur, Noah Spies, Xianglong Zhang, Seunggyu Byeon, Reenal Pattni, Noa Ben-Efraim, Michael S Haney, Rajini Rani Haraksingh, Giltae Song, Hanlee P Ji, Dimitri Perrin, Wing H Wong, Alexej Abyzov, Alexander Eckehart Urban
Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562. Genome research 29 (3) (2019)
Anahita Amiri, Gianfilippo Coppola, Soraya Scuderi, Feinan Wu, Tanmoy Roychowdhury, Fuchen Liu, Sirisha Pochareddy, Yurae Shin, Alexias Safi, Lingyun Song, Ying Zhu, André M M Sousa, null null, Mark B Gerstein, Gregory E Crawford, Nenad Sestan, Alexej Abyzov, Flora M Vaccarino
Transcriptome and epigenome landscape of human cortical development modeled in organoids. Science (New York, N.Y.) 362 (6420) (2019)
Taejeong Bae, Livia Tomasini, Jessica Mariani, Bo Zhou, Tanmoy Roychowdhury, Daniel Franjic, Mihovil Pletikos, Reenal Pattni, Bo-Juen Chen, Elisa Venturini, Bridget Riley-Gillis, Nenad Sestan, Alexander Eckehart Urban, Alexej Abyzov, Flora M Vaccarino
Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis. Science (New York, N.Y.) 359 (6375) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Alexej Abyzov