Athanasios Typas

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 30

Top Topics

Escherichia Coli

Microbial Community

Antimicrobial Resistance

Obsessive Compulsive Disorder

Top Venues

Molecular systems biology

Nature microbiology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Iskander Khusainov, Natalie Romanov, Camille V Goemans, Beata Turoňová, Christian E Zimmerli, Sonja Welsch, Julian D Langer, Athanasios Typas, Martin Beck
Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction. Nature communications 15 (1) (2024)
Jacob Bobonis, Alessio Ling Jie Yang, Carlos Geert Pieter Voogdt, Athanasios Typas
TAC-TIC, a high-throughput genetics method to identify triggers or blockers of bacterial toxin-antitoxin systems. Nature protocols 19 (8) (2024)
Iskander Khusainov, Natalie Romanov, Camille V Goemans, Beata Turoňová, Christian E Zimmerli, Sonja Welsch, Julian D Langer, Athanasios Typas, Martin Beck
Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction. Nature communications 15 (1) (2024)
Iskander Khusainov, Natalie Romanov, Camille V Goemans, Beata Turoňová, Christian E Zimmerli, Sonja Welsch, Julian D Langer, Athanasios Typas, Martin Beck
Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction. Nature communications 15 (1) (2024)
Iskander Khusainov, Natalie Romanov, Camille V Goemans, Beata Turoňová, Christian E Zimmerli, Sonja Welsch, Julian D Langer, Athanasios Typas, Martin Beck
Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction. Nature communications 15 (1) (2024)
Jacob Bobonis, Alessio Ling Jie Yang, Carlos Geert Pieter Voogdt, Athanasios Typas
TAC-TIC, a high-throughput genetics method to identify triggers or blockers of bacterial toxin-antitoxin systems. Nature protocols (2024)
Elisabetta Cacace, Vladislav Kim, Vallo Varik, Michael Knopp, Manuela Tietgen, Amber Brauer-Nikonow, Kemal Inecik, André Mateus, Alessio Milanese, Marita Torrissen Mårli, Karin Mitosch, Joel Selkrig, Ana Rita Brochado, Oscar Paul Kuipers, Morten Kjos, Georg Zeller, Mikhail M Savitski, Stephan Göttig, Wolfgang Huber, Athanasios Typas
Systematic analysis of drug combinations against Gram-positive bacteria. Nature microbiology (2023)
Sander Wuyts, Renato Jc Alves, Maria Zimmermann-Kogadeeva, Suguru Nishijima, Sonja Blasche, Marja Driessen, Philipp E Geyer, Rajna Hercog, Ece Kartal, Lisa Maier, Johannes B Müller, Sarela Garcia Santamarina, Thomas Sebastian Benedikt Schmidt, Daniel C Sevin, Anja Telzerow, Peter V Treit, Tobias Wenzel, Athanasios Typas, Kiran Raosaheb Patil, Matthias Mann, Michael Kuhn, Peer Bork
Consistency across multi-omics layers in a drug-perturbed gut microbial community. Molecular systems biology (2023)
Patrick Müller, Jacobo de la Cuesta-Zuluaga, Michael Kuhn, Maral Baghai Arassi, Tim Treis, Sonja Blasche, Michael Zimmermann, Peer Bork, Kiran Raosaheb Patil, Athanasios Typas, Sarela Garcia-Santamarina, Lisa Maier
High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities. Nature protocols (2023)
Oihane Irazoki, Josy Ter Beek, Laura Alvarez, André Mateus, Remy Colin, Athanasios Typas, Mikhail M Savitski, Victor Sourjik, Ronnie P-A Berntsson, Felipe Cava
D-amino acids signal a stress-dependent run-away response in Vibrio cholerae. Nature microbiology (2023)
Karin Mitosch, Martin Beyß, Panagiotis L Kastritis, Bernhard Drotleff, Katharina Nöh, Theodore Alexandrov, Kiran Raosaheb Patil, Athanasios Typas
A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella. PLoS biology 21 (8) (2023)
Vinita Periwal, Stefan Bassler, Sergej Andrejev, Natalia Gabrielli, Kaustubh Raosaheb Patil, Athanasios Typas, Kiran Raosaheb Patil
Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs. PLoS computational biology 18 (4) (2022)
Jacob Bobonis, Karin Mitosch, André Mateus, Nicolai Karcher, George Kritikos, Joel Selkrig, Matylda Zietek, Vivian Monzon, Birgit Pfalz, Sarela Garcia-Santamarina, Marco Galardini, Anna Sueki, Callie Kobayashi, Frank Stein, Alex Bateman, Georg Zeller, Mikhail M Savitski, Johanna R Elfenbein, Helene L Andrews-Polymenis, Athanasios Typas
Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems. Nature 609 (7925) (2022)
Jolanda Verheul, Adam Lodge, Hamish C L Yau, Xiaolong Liu, Gabriela Boelter, Xinwei Liu, Alexandra S Solovyova, Athanasios Typas, Manuel Banzhaf, Waldemar Vollmer, Tanneke den Blaauwen
Early midcell localization of Escherichia coli PBP4 supports the function of peptidoglycan amidases. PLoS genetics 18 (5) (2022)
Lisa Maier, Camille V Goemans, Jakob Wirbel, Michael Kuhn, Claudia Eberl, Mihaela Pruteanu, Patrick Müller, Sarela Garcia Santamarina, Elisabetta Cacace, Boyao Zhang, Cordula Gekeler, Tisya Banerjee, Exene Erin Anderson, Alessio Milanese, Ulrike Loeber, Sofia Kirke Forslund-Startceva, Kiran Raosaheb Patil, Michael Zimmermann, Bärbel Stecher, Georg Zeller, Peer Bork, Athanasios Typas
Unravelling the collateral damage of antibiotics on gut bacteria. Nature 599 (7883) (2021)
André Mateus, Nils Kurzawa, Isabelle Becher, Sindhuja Sridharan, Dominic Helm, Frank Stein, Athanasios Typas, Mikhail M Savitski
Thermal proteome profiling for interrogating protein interactions. Molecular systems biology 16 (3) (2021)
Cristina Viéitez, Bede Phillip Busby, David Ochoa, André Mateus, Danish Memon, Marco Galardini, Umut Yildiz, Matteo Trovato, Areeb Jawed, Alexander G Geiger, Michaela Oborská-Oplová, Clement M Potel, Sibylle C Vonesch, Chelsea Szu Tu, Mohammed Shahraz, Frank Stein, Lars M Steinmetz, Vikram G Panse, Kyung-Min Noh, Mikhail M Savitski, Athanasios Typas, Pedro Beltrao
High-throughput functional characterization of protein phosphorylation sites in yeast. Nature biotechnology (2021)
Michael Zimmermann, Kiran Raosaheb Patil, Athanasios Typas, Lisa Maier
Towards a mechanistic understanding of reciprocal drug-microbiome interactions. Molecular systems biology 17 (3) (2021)
Clément M Potel, Nils Kurzawa, Isabelle Becher, Athanasios Typas, André Mateus, Mikhail M Savitski
Impact of phosphorylation on thermal stability of proteins. Nature methods 18 (7) (2021)
Joel Selkrig, Megan Lynn Stanifer, André Mateus, Karin Mitosch, Inigo Barrio-Hernandez, Mandy Rettel, Heeyoung Kim, Carlos G P Voogdt, Philipp Walch, Carmon Kee, Nils Kurzawa, Frank Stein, Clément Potel, Anna Jarzab, Bernhard Kuster, Ralf F W Bartenschlager, Steeve Boulant, Pedro Beltrao, Athanasios Typas, Mikhail M Savitski
SARS-CoV-2 infection remodels the host protein thermal stability landscape. Molecular systems biology 17 (2) (2021)
Martina Kluenemann, Sergej Andrejev, Sonja Blasche, André Mateus, Panagiotis L Kastritis, Saravanan Devendran, Johanna Vappiani, Bernd Simon, Timothy A Scott, Eleni Kafkia, Dimitrios Konstantinidis, Katharina Zirngibl, Eleonora Mastrorilli, Manuel Banzhaf, Marie-Therese Mackmull, Felix Hövelmann, Leo Nesme, Ana Rita Brochado, Lisa Maier, Thomas Bock, Vinita Periwal, Manjeet Kumar, Yongkyu Kim, Melanie Tramontano, Carsten Schultz, Martin Beck, Janosch Hennig, Michael Zimmermann, Daniel C Sévin, Filipe Cabreiro, Mikhail M Savitski, Peer Bork, Athanasios Typas, Kiran Raosaheb Patil
Bioaccumulation of therapeutic drugs by human gut bacteria. Nature 597 (7877) (2021)
Joel Selkrig, Nan Li, Annika Hausmann, Matthew S J Mangan, Matylda Zietek, André Mateus, Jacob Bobonis, Anna Sueki, Haruna Imamura, Bachir El Debs, Gianluca Sigismondo, Bogdan I Florea, Herman S Overkleeft, Nataša Kopitar-Jerala, Boris Turk, Pedro Beltrao, Mikhail M Savitski, Eicke Latz, Wolf-Dietrich Hardt, Jeroen Krijgsveld, Athanasios Typas
Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection. Nature microbiology 5 (9) (2020)
André Mateus, Johannes F Hevler, Jacob Bobonis, Nils Kurzawa, Malay Shah, Karin Mitosch, Camille V Goemans, Dominic Helm, Frank Stein, Athanasios Typas, Mikhail M Savitski
The functional proteome landscape of Escherichia coli. Nature 588 (7838) (2020)
Manuel Banzhaf, Hamish Cl Yau, Jolanda Verheul, Adam Lodge, George Kritikos, André Mateus, Baptiste Cordier, Ann Kristin Hov, Frank Stein, Morgane Wartel, Manuel Pazos, Alexandra S Solovyova, Eefjan Breukink, Sven van Teeffelen, Mikhail M Savitski, Tanneke den Blaauwen, Athanasios Typas, Waldemar Vollmer
Outer membrane lipoprotein NlpI scaffolds peptidoglycan hydrolases within multi-enzyme complexes in Escherichia coli. The EMBO journal 39 (5) (2020)
Marco Galardini, Bede Phillip Busby, Cristina Vieitez, Alistair S Dunham, Athanasios Typas, Pedro Beltrao
The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae. Molecular systems biology 15 (12) (2020)
Sandra Y Wotzka, Markus Kreuzer, Lisa Maier, Markus Arnoldini, Bidong D Nguyen, Alexander O Brachmann, Dorothée Lisa Berthold, Mirjam Zünd, Annika Hausmann, Erik Bakkeren, Daniel Hoces, Ersin Gül, Markus Beutler, Tamas Dolowschiak, Michael Zimmermann, Tobias Fuhrer, Kathrin Moor, Uwe Sauer, Athanasios Typas, Jörn Piel, Médéric Diard, Andrew J Macpherson, Bärbel Stecher, Shinichi Sunagawa, Emma Slack, Wolf-Dietrich Hardt
Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice. Nature microbiology 4 (12) (2019)
André Mateus, Jacob Bobonis, Nils Kurzawa, Frank Stein, Dominic Helm, Johannes Hevler, Athanasios Typas, Mikhail M Savitski
Thermal proteome profiling in bacteria: probing protein state in vivo. Molecular systems biology 14 (7) (2018)
Omar Wagih, Marco Galardini, Bede Phillip Busby, Danish Memon, Athanasios Typas, Pedro Beltrao
A resource of variant effect predictions of single nucleotide variants in model organisms. Molecular systems biology 14 (12) (2018)
Albert Palleja, Kristian H Mikkelsen, Sofia K Forslund, Alireza Kashani, Kristine H Allin, Trine Nielsen, Tue Haldor Hansen, Suisha Liang, Qiang Feng, Chenchen Zhang, Paul Theodor Pyl, Luis Pedro Coelho, Huanming Yang, Jian Wang, Athanasios Typas, Morten F Nielsen, Henrik Bjorn Nielsen, Peer Bork, Jun Wang, Tina Vilsbøll, Torben Hansen, Filip K Krag Knop, Manimozhiyan Arumugam, Oluf Pedersen
Recovery of gut microbiota of healthy adults following antibiotic exposure. Nature microbiology 3 (11) (2018)
Melanie Tramontano, Sergej Andrejev, Mihaela Pruteanu, Martina Klünemann, Michael Kuhn, Marco Galardini, Paula Jouhten, Aleksej Zelezniak, Georg Zeller, Peer Bork, Athanasios Typas, Kiran Raosaheb Patil
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies. Nature microbiology 3 (4) (2018)