Pedro Beltrao (P Beltrao)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 74

Top Topics

Genome Wide Association

Saccharomyces Cerevisiae

Top Venues

Molecular systems biology

Nature structural & molecular biology

Nature genetics

The Journal of cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Jürgen Jänes, Marc Müller, Senthil Selvaraj, Diogo Manoel, James Stephenson, Catarina Gonçalves, Aleix Lafita, Benjamin Polacco, Kirsten Obernier, Kaur Alasoo, Manuel C Lemos, Nevan Krogan, Maria Martin, Luis R Saraiva, David Burke, Pedro Beltrao
Predicted mechanistic impacts of human protein missense variants. bioRxiv : the preprint server for biology (2024)
Jürgen Jänes, Pedro Beltrao
Deep learning for protein structure prediction and design-progress and applications. Molecular systems biology (2024)
Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Alison K Gillingham, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A Cowley, Luise Nagel, Basavraj Khanppnavar, Tetiana Serdiuk, Pedro Beltrao, Volodymyr M Korkhov, Sean Munro, Roland Riek, Natalie de Souza, Paola Picotti
Systematic identification of structure-specific protein-protein interactions. Molecular systems biology 20 (6) (2024)
Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Alison K Gillingham, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A Cowley, Luise Nagel, Basavraj Khanppnavar, Tetiana Serdiuk, Pedro Beltrao, Volodymyr M Korkhov, Sean Munro, Roland Riek, Natalie de Souza, Paola Picotti
Systematic identification of structure-specific protein-protein interactions. Molecular systems biology 20 (6) (2024)
Jürgen Jänes, Pedro Beltrao
Deep learning for protein structure prediction and design-progress and applications. Molecular systems biology 20 (3) (2024)
Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Alison K Gillingham, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A Cowley, Luise Nagel, Basavraj Khanppnavar, Tetiana Serdiuk, Pedro Beltrao, Volodymyr M Korkhov, Sean Munro, Roland Riek, Natalie de Souza, Paola Picotti
Systematic identification of structure-specific protein-protein interactions. Molecular systems biology (2024)
Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Alison K Gillingham, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A Cowley, Luise Nagel, Basavraj Khanppnavar, Tetiana Serdiuk, Pedro Beltrao, Volodymyr M Korkhov, Sean Munro, Roland Riek, Natalie de Souza, Paola Picotti
Systematic identification of structure-specific protein-protein interactions. Molecular systems biology 20 (6) (2024)
Pedro Beltrao
The power of scientific collaborations and the future of structural biology. Nature structural & molecular biology (2024)
Jürgen Jänes, Marc Müller, Senthil Selvaraj, Diogo Manoel, James Stephenson, Catarina Gonçalves, Aleix Lafita, Benjamin Polacco, Kirsten Obernier, Kaur Alasoo, Manuel C Lemos, Nevan Krogan, Maria Martin, Luis R Saraiva, David Burke, Pedro Beltrao
Predicted mechanistic impacts of human protein missense variants. bioRxiv : the preprint server for biology (2024)
Jürgen Jänes, Marc Müller, Senthil Selvaraj, Diogo Manoel, James Stephenson, Catarina Gonçalves, Aleix Lafita, Benjamin Polacco, Kirsten Obernier, Kaur Alasoo, Manuel C Lemos, Nevan Krogan, Maria Martin, Luis R Saraiva, David Burke, Pedro Beltrao
Predicted mechanistic impacts of human protein missense variants. bioRxiv : the preprint server for biology (2024)
Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Alison K Gillingham, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A Cowley, Luise Nagel, Basavraj Khanppnavar, Tetiana Serdiuk, Pedro Beltrao, Volodymyr M Korkhov, Sean Munro, Roland Riek, Natalie de Souza, Paola Picotti
Systematic identification of structure-specific protein-protein interactions. Molecular systems biology 20 (6) (2024)
Jürgen Jänes, Pedro Beltrao
Deep learning for protein structure prediction and design-progress and applications. Molecular systems biology 20 (3) (2024)
Jürgen Jänes, Pedro Beltrao
Deep learning for protein structure prediction and design-progress and applications. Molecular systems biology 20 (3) (2024)
Jürgen Jänes, Marc Müller, Senthil Selvaraj, Diogo Manoel, James Stephenson, Catarina Gonçalves, Aleix Lafita, Benjamin Polacco, Kirsten Obernier, Kaur Alasoo, Manuel C Lemos, Nevan Krogan, Maria Martin, Luis R Saraiva, David Burke, Pedro Beltrao
Predicted mechanistic impacts of human protein missense variants. bioRxiv : the preprint server for biology (2024)
Aleš Holfeld, Dina Schuster, Fabian Sesterhenn, Alison K Gillingham, Patrick Stalder, Walther Haenseler, Inigo Barrio-Hernandez, Dhiman Ghosh, Jane Vowles, Sally A Cowley, Luise Nagel, Basavraj Khanppnavar, Tetiana Serdiuk, Pedro Beltrao, Volodymyr M Korkhov, Sean Munro, Roland Riek, Natalie de Souza, Paola Picotti
Systematic identification of structure-specific protein-protein interactions. Molecular systems biology 20 (6) (2024)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Abel Sousa, Aurelien Dugourd, Danish Memon, Borgthor Petursson, Evangelia Petsalaki, Julio Saez-Rodriguez, Pedro Beltrao
Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival. Molecular systems biology 19 (3) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Abel Sousa, Aurelien Dugourd, Danish Memon, Borgthor Petursson, Evangelia Petsalaki, Julio Saez-Rodriguez, Pedro Beltrao
Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival. Molecular systems biology (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics (2023)
Abel Sousa, Aurelien Dugourd, Danish Memon, Borgthor Petursson, Evangelia Petsalaki, Julio Saez-Rodriguez, Pedro Beltrao
Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival. Molecular systems biology 19 (3) (2023)
Luca Stefanucci, Janine H Collins, Matthew Christopher Sims, Iñigo Barrio-Hernandez, Luanluan Sun, Oliver S Burren, Livia Perfetto, Isobel Bender, Tiffany J Callahan, Kathryn Fleming, Jose Antonio Guerrero, Henning Hermjakob, Maria Jesus Martin, James David Stephenson, Kalpana Panneerselvam, Slavé Petrovski, Pablo Porras, Peter Nick Robinson, Quanli Wang, Xavier Watkins, Mattia Frontini, Roman A Laskowski, Pedro Beltrao, Emanuele Di Angelantonio, Keith Gomez, Michael A Laffan, Willem Hendrik Ouwehand, Andrew D Mumford, Kathleen Freson, Keren Jacqueline Carss, Kate Downes, Nicholas S Gleadall, Karyn Megy, Elspeth A Bruford, Dragana Vuckovic
The effects of pathogenic variants for inherited hemostasis disorders in 140,214 UK Biobank participants. Blood (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Kornélia Szebényi, Inigo Barrio-Hernandez, George M Gibbons, Luca Biasetti, Claire Troakes, Pedro Beltrao, András Lakatos
A human proteogenomic-cellular framework identifies KIF5A as a modulator of astrocyte process integrity with relevance to ALS. Communications biology 6 (1) (2023)
Abel Sousa, Aurelien Dugourd, Danish Memon, Borgthor Petursson, Evangelia Petsalaki, Julio Saez-Rodriguez, Pedro Beltrao
Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival. Molecular systems biology 19 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Inigo Barrio-Hernandez, Jingi Yeo, Jürgen Jänes, Milot Mirdita, Cameron L M Gilchrist, Tanita Wein, Mihaly Varadi, Sameer Velankar, Pedro Beltrao, Martin Steinegger
Clustering-predicted structures at the scale of the known protein universe. Nature (2023)
Kornélia Szebényi, Inigo Barrio-Hernandez, George M Gibbons, Luca Biasetti, Claire Troakes, Pedro Beltrao, András Lakatos
A human proteogenomic-cellular framework identifies KIF5A as a modulator of astrocyte process integrity with relevance to ALS. Communications biology 6 (1) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology (2023)
Inigo Barrio-Hernandez, Jeremy Schwartzentruber, Anjali Shrivastava, Noemi Del-Toro, Asier Gonzalez, Qian Zhang, Edward Mountjoy, Daniel Suveges, David Ochoa, Maya Ghoussaini, Glyn Bradley, Henning Hermjakob, Sandra E Orchard, Ian Dunham, Carl A Anderson, Pablo Porras, Pedro Beltrao
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Nature genetics 55 (3) (2023)
Belinda Wang, Rasika Vartak, Yefim Zaltsman, Zun Zar Chi Naing, Kelsey M Hennick, Benjamin J Polacco, Ali Bashir, Manon Eckhardt, Mehdi Bouhaddou, Jiewei Xu, Nawei Sun, Micaela Lasser, Yuan Zhou, Keelan Z Guiley, Una Chan, Julia A Kaye, Prachi Khare, Sam Drake, Vanessa Drury, David Francis Burke, Silvano Gonzalez, Sahar Alkhairy, Reuben Thomas, Stephanie Lam, Montana Morris, Ethel Bader, Meghan Seyler, Tierney Baum, Rebecca Krasnoff, Sheng Wang, Presley Pham, Juan Arbalaez, Dexter Pratt, Shivali Chag, Thomas Rolland, Thomas Bourgeron, Steven Finkbeiner, Sourav Bandyopadhyay, Trey Ideker, Pedro Beltrao, Nadir Moohmood, Helen Rankin Willsey, Kirsten Obernier, Tomasz Jan Nowakowski, Ruth Hüttenhain, Matthew W State, A Jeremy Willsey, Nevan J Krogan
A foundational atlas of autism protein interactions reveals molecular convergence. bioRxiv : the preprint server for biology (2023)
Kornélia Szebényi, Inigo Barrio-Hernandez, George M Gibbons, Luca Biasetti, Claire Troakes, Pedro Beltrao, András Lakatos
A human proteogenomic-cellular framework identifies KIF5A as a modulator of astrocyte process integrity with relevance to ALS. Communications biology 6 (1) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
David Francis Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S Dunham, Pascal Albanese, Andrew Keller, Richard A Scheltema, James E Bruce, Alexander Leitner, Petras J Kundrotas, Pedro Beltrao, Arne Elofsson
Towards a structurally resolved human protein interaction network. Nature structural & molecular biology 30 (2) (2023)
Abel Sousa, Aurelien Dugourd, Danish Memon, Borgthor Petursson, Evangelia Petsalaki, Julio Saez-Rodriguez, Pedro Beltrao
Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival. Molecular systems biology 19 (3) (2023)
Grant A King, Rahel Wettstein, Joseph M Varberg, Keerthana Chetlapalli, Madison E Walsh, Ludovic C J Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L Jaspersen, Joao Matos, Elçin Ünal
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. The Journal of cell biology 222 (2) (2022)
Grant A King, Rahel Wettstein, Joseph M Varberg, Keerthana Chetlapalli, Madison E Walsh, Ludovic C J Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L Jaspersen, Joao Matos, Elçin Ünal
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. The Journal of cell biology 222 (2) (2022)
Grant A King, Rahel Wettstein, Joseph M Varberg, Keerthana Chetlapalli, Madison E Walsh, Ludovic C J Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L Jaspersen, Joao Matos, Elçin Ünal
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. The Journal of cell biology 222 (2) (2022)
Grant A King, Rahel Wettstein, Joseph M Varberg, Keerthana Chetlapalli, Madison E Walsh, Ludovic C J Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L Jaspersen, Joao Matos, Elçin Ünal
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. The Journal of cell biology 222 (2) (2022)
Grant A King, Rahel Wettstein, Joseph M Varberg, Keerthana Chetlapalli, Madison E Walsh, Ludovic C J Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L Jaspersen, Joao Matos, Elçin Ünal
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. The Journal of cell biology 222 (2) (2022)
Alistair S Dunham, Pedro Beltrao
Exploring amino acid functions in a deep mutational landscape. Molecular systems biology 17 (7) (2022)
Mehmet Akdel, Douglas E V Pires, Eduard Porta Pardo, Jürgen Jänes, Arthur O Zalevsky, Bálint Mészáros, Patrick Bryant, Lydia L Good, Roman A Laskowski, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Petras Kundrotas, Victoria Ruiz Serra, Carlos Henrique Miranda, Alistair S Dunham, David Francis Burke, Neera Borkakoti, Sameer Velankar, Adam Frost, Jérôme Basquin, Kresten Lindorff-Larsen, Alex Bateman, Andrey V Kajava, Alfonso Valencia, Sergey Ovchinnikov, Janani Durairaj, David Benjamin Ascher, Janet M Thornton, Norman E Davey, Amelie Stein, Arne Elofsson, Tristan I Croll, Pedro Beltrao
A structural biology community assessment of AlphaFold2 applications. Nature structural & molecular biology 29 (11) (2022)
Grant A King, Rahel Wettstein, Joseph M Varberg, Keerthana Chetlapalli, Madison E Walsh, Ludovic C J Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L Jaspersen, Joao Matos, Elçin Ünal
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. The Journal of cell biology 222 (2) (2022)
Grant A King, Rahel Wettstein, Joseph M Varberg, Keerthana Chetlapalli, Madison E Walsh, Ludovic C J Gillet, Claudia Hernández-Armenta, Pedro Beltrao, Ruedi Aebersold, Sue L Jaspersen, Joao Matos, Elçin Ünal
Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. The Journal of cell biology 222 (2) (2022)
Liam Gaziano, Claudia Giambartolomei, Alexandre C Pereira, Anna Gaulton, Daniel C Posner, Sonja A Swanson, Yuk-Lam Ho, Sudha K Iyengar, Nicole M Kosik, Marijana Vujkovic, David R Gagnon, A Patrícia Bento, Inigo Barrio-Hernandez, Lars Rönnblom, Niklas Hagberg, Christian Lundtoft, Claudia Langenberg, Maik Pietzner, Dennis Valentine, Stefano Gustincich, Gian Gaetano Tartaglia, Elias Allara, Praveen Surendran, Stephen Burgess, Jing Hua Zhao, James E Peters, Bram Peter Prins, Emanuele Di Angelantonio, Poornima Devineni, Yunling Shi, Kristine E Lynch, Scott L DuVall, Helene Garcon, Lauren O Thomann, Jin J Zhou, Bryan R Gorman, Jennifer E Huffman, Christopher J O'Donnell, Philip S Tsao, Jean C Beckham, Saiju Pyarajan, Sumitra Muralidhar, Grant D Huang, Rachel Ramoni, Pedro Beltrao, John Danesh, Adriana M Hung, Kyong-Mi Chang, Yan V Sun, Jacob Joseph, Andrew R Leach, Todd L Edwards, Kelly Cho, J Michael Gaziano, Adam S Butterworth, Juan P Casas, null null
Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19. Nature medicine 27 (4) (2021)
Cristina Viéitez, Bede Phillip Busby, David Ochoa, André Mateus, Danish Memon, Marco Galardini, Umut Yildiz, Matteo Trovato, Areeb Jawed, Alexander G Geiger, Michaela Oborská-Oplová, Clement M Potel, Sibylle C Vonesch, Chelsea Szu Tu, Mohammed Shahraz, Frank Stein, Lars M Steinmetz, Vikram G Panse, Kyung-Min Noh, Mikhail M Savitski, Athanasios Typas, Pedro Beltrao
High-throughput functional characterization of protein phosphorylation sites in yeast. Nature biotechnology (2021)
Jeremy A Schwartzentruber, Sarah Cooper, Jimmy Z Liu, Inigo Barrio-Hernandez, Erica Bello, Natushiko Kumasaka, Adam M H Young, Robin J M Franklin, Toby Johnson, Karol Estrada, Daniel J Gaffney, Pedro Beltrao, Andrew R Bassett
Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes. Nature genetics 53 (3) (2021)
Lucy G Thorne, Mehdi Bouhaddou, Ann-Kathrin Reuschl, Lorena Zuliani-Alvarez, Benjamin J Polacco, Adrian Pelin, Jyoti Batra, Matthew V X Whelan, Manisha Ummadi, Ajda Rojc, Jane Turner, Kirsten Obernier, Hannes Braberg, Margaret Soucheray, Alicia L Richards, Kuei-Ho Chen, Bhavya Harjai, Danish Memon, Myra Hosmillo, Joseph Hiatt, Aminu S Jahun, Ian G Goodfellow, Jacqueline M Fabius, Kevan M Shokat, Natalia Jura, Kliment A Verba, Mahdad Noursadeghi, Pedro Beltrao, Danielle L Swaney, Adolfo García-Sastre, Clare Jolly, Greg J Towers, Nevan J Krogan
Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant. bioRxiv : the preprint server for biology (2021)
Danish Memon, Inigo Barrio-Hernandez, Pedro Beltrao
Individual COVID-19 disease trajectories revealed by plasma proteomics. EMBO molecular medicine 13 (8) (2021)
Joel Selkrig, Megan Lynn Stanifer, André Mateus, Karin Mitosch, Inigo Barrio-Hernandez, Mandy Rettel, Heeyoung Kim, Carlos G P Voogdt, Philipp Walch, Carmon Kee, Nils Kurzawa, Frank Stein, Clément Potel, Anna Jarzab, Bernhard Kuster, Ralf F W Bartenschlager, Steeve Boulant, Pedro Beltrao, Athanasios Typas, Mikhail M Savitski
SARS-CoV-2 infection remodels the host protein thermal stability landscape. Molecular systems biology 17 (2) (2021)
Aurélien J F Dugourd, Christoph Kuppe, Marco Sciacovelli, Enio Gjerga, Attila Gabor, Kristina B Emdal, Vitor Vieira, Dorte B Bekker-Jensen, Jennifer Kranz, Eric M J Bindels, Ana S H Costa, Abel Sousa, Pedro Beltrao, Miguel Rocha, Jesper Velgaard Olsen, Christian Frezza, Rafael Kramann, Julio Saez-Rodriguez
Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses. Molecular systems biology 17 (1) (2021)
Alejandro Jiménez-Sánchez, Paulina Cybulska, Katherine LaVigne Mager, Simon Koplev, Oliver Cast, Dominique-Laurent Couturier, Danish Memon, Pier Selenica, Ines Nikolovski, Yousef Mazaheri, Yonina Bykov, Felipe C Geyer, Geoffrey Macintyre, Lena Morrill Gavarró, Ruben M Drews, Michael B Gill, Anastasios D Papanastasiou, Ramon E Sosa, Robert A Soslow, Tyler Walther, Ronglai Shen, Dennis S Chi, Kay J Park, Travis Hollmann, Jorge Sergio Reis-Filho, Florian Markowetz, Pedro Beltrao, Hebert Alberto Vargas, Dmitriy Zamarin, James D Brenton, Alexandra Snyder, Britta Weigelt, Evis Sala, Martin L Miller
Unraveling tumor-immune heterogeneity in advanced ovarian cancer uncovers immunogenic effect of chemotherapy. Nature genetics 52 (6) (2020)
Marco Galardini, Olivier Clermont, Alexandra Baron, Bede Phillip Busby, Sara Dion, Sören Schubert, Pedro Beltrao, Erick Denamur
Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study. PLoS genetics 16 (10) (2020)
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney, Tia A Tummino, Ruth Hüttenhain, Robyn M Kaake, Alicia L Richards, Beril Tutuncuoglu, Helene Foussard, Jyoti Batra, Kelsey Haas, Maya Modak, Minkyu Kim, Paige Haas, Benjamin J Polacco, Hannes Braberg, Jacqueline M Fabius, Manon Eckhardt, Margaret Soucheray, Melanie J Bennett, Merve Cakir, Michael J McGregor, Qiongyu Li, Bjoern Meyer, Ferdinand Roesch, Thomas Vallet, Alice Mac Kain, Lisa Miorin, Elena Moreno, Zun Zar Chi Naing, Yuan Zhou, Shiming Peng, Ying Shi, Ziyang Zhang, Wenqi Shen, Ilsa T Kirby, James E Melnyk, John S Chorba, Kevin Lou, Shizhong A Dai, Inigo Barrio-Hernandez, Danish Memon, Claudia Hernandez-Armenta, Jiankun Lyu, Christopher J P Mathy, Tina Perica, Kala Bharath Pilla, Sai J Ganesan, Daniel J Saltzberg, Ramachandran Rakesh, Xi Liu, Sara Brin Rosenthal, Lorenzo Calviello, Srivats Venkataramanan, José M Liboy-Lugo, Yizhu Lin, Xi-Ping Huang, YongFeng Liu, Stephanie A Wankowicz, Markus Bohn, Maliheh Safari, Fatima S Ugur, Cassandra Koh, Nastaran Sadat Savar, Quang Dinh Tran, Djoshkun Shengjuler, Sabrina J Fletcher, Michael C O'Neal, Yiming Cai, Jason C J Chang, David J Broadhurst, Saker Klippsten, Phillip P Sharp, Nicole A Wenzell, Duygu Kuzuoglu-Ozturk, Hao-Yuan Wang, Raphael Trenker, Janet M Young, Devin A Cavero, Joseph Hiatt, Theodore L Roth, Ujjwal Rathore, Advait Subramanian, Julia Noack, Mathieu Hubert, Robert M Stroud, Alan D Frankel, Oren S Rosenberg, Kliment A Verba, David A Agard, Melanie Ott, Michael Emerman, Natalia Jura, Mark Von Zastrow, Eric Verdin, Alan Ashworth, Olivier Schwartz, Christophe D'Enfert, Shaeri Mukherjee, Matthew P Jacobson, Harmit Singh Malik, Danica G Fujimori, Trey Ideker, Charles S Craik, Stephen N Floor, Brian K Shoichet, John D Gross, Andrej Sali, Bryan L Roth, Davide Ruggero, Jack Taunton, Tanja Kortemme, Pedro Beltrao, Marco Vignuzzi, Adolfo García-Sastre, Kevan M Shokat, Brian K Shoichet, Nevan J Krogan
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. Nature 583 (7816) (2020)
Marco Galardini, Bede Phillip Busby, Cristina Vieitez, Alistair S Dunham, Athanasios Typas, Pedro Beltrao
The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae. Molecular systems biology 15 (12) (2020)
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Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.) 370 (6521) (2020)
Marta J Strumillo, Michaela Oplová, Cristina Viéitez, David Ochoa, Mohammed Shahraz, Bede Phillip Busby, Richelle Sopko, Romain A Studer, Norbert Perrimon, Vikram G Panse, Pedro Beltrao
Conserved phosphorylation hotspots in eukaryotic protein domain families. Nature communications 10 (1) (2019)
null null, N Del-Toro, M Duesbury, M Koch, L Perfetto, Anjalia Shrivastava, David Ochoa, O Wagih, Janet Piñero, M Kotlyar, Chiara Pastrello, Pedro Beltrao, L I Furlong, Igor Jurisica, Henning Hermjakob, S Orchard, Pablo Porras
Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nature communications 10 (1) (2019)
David Bradley, Pedro Beltrao
Evolution of protein kinase substrate recognition at the active site. PLoS biology 17 (6) (2019)
null null, N Del-Toro, M Duesbury, M Koch, L Perfetto, Anjalia Shrivastava, David Ochoa, O Wagih, Janet Piñero, M Kotlyar, Chiara Pastrello, Pedro Beltrao, L I Furlong, Igor Jurisica, Henning Hermjakob, S Orchard, Pablo Porras
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David Ochoa, Andrew F Jarnuczak, Cristina Viéitez, Maja Gehre, Margaret Soucheray, André Mateus, Askar A Kleefeldt, Anthony Hill, Luz Garcia-Alonso, Frank Stein, Nevan J Krogan, Mikhail M Savitski, Danielle L Swaney, Juan Antonio Vizcaino, Kyung-Min Noh, Pedro Beltrao
The functional landscape of the human phosphoproteome. Nature biotechnology 38 (3) (2019)
Omar Wagih, Marco Galardini, Bede Phillip Busby, Danish Memon, Athanasios Typas, Pedro Beltrao
A resource of variant effect predictions of single nucleotide variants in model organisms. Molecular systems biology 14 (12) (2018)
Emanuel Gonçalves, Zrinka Raguz Nakic, Mattia Zampieri, Omar Wagih, David Ochoa, Uwe Sauer, Pedro Beltrao, Julio Saez-Rodriguez
Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast. PLoS computational biology 13 (1) (2017)
Marco Galardini, Alexandra Koumoutsi, Lucia Herrera-Dominguez, Juan Antonio Cordero-Varela, Anja Telzerow, Omar Wagih, Morgane Wartel, Olivier Clermont, Erick Denamur, Athanasios Typas, Pedro Beltrao
Phenotype inference in an Escherichia coli strain panel. eLife 6 (2017)
David Ochoa, Mindaugas Jonikas, Robert T Lawrence, Bachir El Debs, Joel Selkrig, Athanasios Typas, Judit Villén, Silvia Dm Santos, Pedro Beltrao
An atlas of human kinase regulation. Molecular systems biology 12 (12) (2016)