Brenda J Andrews (Brenda Andrews)

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 39

Top Topics

Machine Learning

Saccharomyces Cerevisiae

Top Venues

Molecular systems biology

bioRxiv : the preprint server for biology

G3 (Bethesda, Md.)

This page only lists publications with an associated author ORCID identifier.

Publications

Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Adam D Longhurst, Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N Ward, Ian R Jones, Vivek Narayan, Frances V Hundley, Arshia Zernab Hassan, Charles Boone, Chad L Myers, Yin Shen, Vijay Ramani, Brenda J Andrews, David P Toczyski
The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2. bioRxiv : the preprint server for biology (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology (2024)
Nikki Bialy, Frank Alber, Brenda J Andrews, Michael Angelo, Brian J Beliveau, Lacramioara Bintu, Alistair Nicol Boettiger, Ulrike Boehm, Claire M Brown, Mahmoud Bukar Maina, James J Chambers, Beth A Cimini, Kevin W Eliceiri, Rachel Errington, Orestis Faklaris, Nathalie Gaudreault, Ronald N Germain, Wojtek J Goscinski, David Grünwald, Michael Halter, Dorit Hanein, John W Hickey, Judith Lacoste, Alex Laude, Emma Lundberg, Jian Ma, Leonel Malacrida, Josh Moore, Glyn Nelson, Elizabeth Kathleen Neumann, Roland Nitschke, Shuichi Onami, Jaime A Pimentel, Anne L Plant, Andrea J Radtke, Bikash Sabata, Denis Schapiro, Johannes Schöneberg, Jeffrey M Spraggins, Damir Sudar, Wouter-Michiel Vierdag, Niels Volkmann, Carolina Wählby, Siyuan Steven Wang, Ziv Rafael Yaniv, Caterina Strambio-De-Castilla
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data. ArXiv (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Adam D Longhurst, Kyle Wang, Harsha Garadi Suresh, Mythili Ketavarapu, Henry N Ward, Ian R Jones, Vivek Narayan, Frances V Hundley, Arshia Zernab Hassan, Charles Boone, Chad L Myers, Yin Shen, Vijay Ramani, Brenda J Andrews, David P Toczyski
The PRC2.1 Subcomplex Opposes G1 Progression through Regulation of CCND1 and CCND2. bioRxiv : the preprint server for biology (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: A Central Repository for Visualizing and Mining High-Content Cell Imaging Projects. Genetics (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: A Central Repository for Visualizing and Mining High-Content Cell Imaging Projects. Genetics (2024)
Anastasiia Razdaibiedina, Alexander V Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: Self-supervised Approach for Protein Functional Annotation from Single-Cell Imaging Data. bioRxiv : the preprint server for biology (2023)
Sylvia Varland, Rui Duarte Silva, Ine Kjosås, Alexandra Faustino, Annelies Bogaert, Maximillian Billmann, Hadi Boukhatmi, Barbara Kellen, Michael Costanzo, Adrian Drazic, Camilla Osberg, Katherine Chan, Xiang Zhang, Amy Hin Yan Tong, Simonetta Andreazza, Juliette J Lee, Lyudmila Nedyalkova, Matej Ušaj, Alexander J Whitworth, Brenda J Andrews, Jason Moffat, Chad L Myers, Kris Gevaert, Charles Boone, Rui Gonçalo Martinho, Thomas Arnesen
N-terminal acetylation shields proteins from degradation and promotes age-dependent motility and longevity. Nature communications 14 (1) (2023)
Anastasiia Razdaibiedina, Alexander V Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: Self-supervised Approach for Protein Functional Annotation from Single-Cell Imaging Data. bioRxiv : the preprint server for biology (2023)
Anastasiia Razdaibiedina, Alexander V Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: Self-supervised Approach for Protein Functional Annotation from Single-Cell Imaging Data. bioRxiv : the preprint server for biology (2023)
Mahfuzur Rahman, Maximillian Billmann, Michael Costanzo, Michael Aregger, Amy H Y Tong, Katherine Chan, Henry Neil Ward, Kevin R Brown, Brenda J Andrews, Charles Boone, Jason Moffat, Chad L Myers
A method for benchmarking genetic screens reveals a predominant mitochondrial bias. Molecular systems biology 17 (5) (2022)
Yuko Arita, Griffin Kim, Zhijian Li, Helena Friesen, Gina Turco, Rebecca Y Wang, Dale Climie, Matej Usaj, Manuel Hotz, Emily H Stoops, Anastasia Baryshnikova, Charles Boone, David Botstein, Brenda J Andrews, R Scott McIsaac
A genome-scale yeast library with inducible expression of individual genes. Molecular systems biology 17 (6) (2022)
Clarence Hue Lok Yeung, Nil Sahin, Brenda J Andrews
Phenomics approaches to understand genetic networks and gene function in yeast. Biochemical Society transactions 50 (2) (2022)
Shinsuke Ohnuki, Itsuki Ogawa, Kaori Itto-Nakama, Fachuang Lu, Ashish Ranjan, Mehdi Kabbage, Abraham Abera Gebre, Masao Yamashita, Sheena C Li, Yoko Yashiroda, Satoshi Yoshida, Takeo Usui, Jeff S Piotrowski, Brenda J Andrews, Charles Boone, Grant W Brown, John Ralph, Yoshikazu Ohya
High-throughput platform for yeast morphological profiling predicts the targets of bioactive compounds. NPJ systems biology and applications 8 (1) (2022)
Michelle M Conti, Julie M Ghizzoni, Ana Gil-Bona, Wen Wang, Michael Costanzo, Rui Li, Mackenzie J Flynn, Julie Lihua Zhu, Chad L Myers, Charles Boone, Brenda J Andrews, Jennifer A Benanti
Repression of essential cell cycle genes increases cellular fitness. PLoS genetics 18 (8) (2022)
Michael Costanzo, Jing Hou, Vincent Messier, Justin Nelson, Mahfuzur Rahman, Benjamin VanderSluis, Wen Wang, Carles Pons, Catherine Ross, Matej Usaj, Bryan-Joseph San Luis, Emira Shuteriqi, Elizabeth N Koch, Patrick Aloy, Chad L Myers, Charles Boone, Brenda J Andrews
Environmental robustness of the global yeast genetic interaction network. Science (New York, N.Y.) 372 (6542) (2021)
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Jason Zi Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Systematic analysis of bypass suppression of essential genes. Molecular systems biology 16 (9) (2021)
Mojca Mattiazzi Usaj, Nil Sahin, Helena Friesen, Carles Pons, Matej Usaj, Myra Paz D Masinas, Ermira Shuteriqi, Aleksei Shkurin, Patrick Aloy, Quaid Morris, Charles Boone, Brenda J Andrews
Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability. Molecular systems biology 16 (2) (2021)
Brenda J Andrews
A decade of G3: Genes|Genomes|Genetics: a unified home for genetics and genomics research. G3 (Bethesda, Md.) 11 (9) (2021)
Grant W Brown, Brenda J Andrews
Setting molecular traps in yeast for identification of anticancer drug targets. Proceedings of the National Academy of Sciences of the United States of America 118 (18) (2021)
Michael Aregger, Keith A Lawson, Maximillian Billmann, Michael Costanzo, Amy H Y Tong, Katherine Chan, Mahfuzur Rahman, Kevin R Brown, Catherine Ross, Matej Usaj, Lucy Nedyalkova, Olga Sizova, Andrea Habsid, Judy Pawling, Zhen-Yuan Lin, Hala Abdouni, Cassandra J Wong, Alexander Weiss, Patricia Mero, James W Dennis, Anne-Claude Gingras, Chad L Myers, Brenda J Andrews, Charles Boone, Jason Moffat
Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism. Nature metabolism 2 (6) (2020)
Elena Kuzmin, Benjamin VanderSluis, Alex N Nguyen Ba, Wen Wang, Elizabeth N Koch, Matej Usaj, Anton Khmelinskii, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Oren Kraus, Amy Tresenrider, Michael Pryszlak, Ming-Che Hu, Brenda Varriano, Michael Costanzo, Michael Knop, Alan M Moses, Chad L Myers, Brenda J Andrews, Charles Boone
Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science (New York, N.Y.) 368 (6498) (2020)
Myra Paz David Masinas, Mojca Mattiazzi Usaj, Matej Usaj, Charles Boone, Brenda J Andrews
TheCellVision.org: A Database for Visualizing and Mining High-Content Cell Imaging Projects. G3 (Bethesda, Md.) 10 (11) (2020)
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N Koch, Carles Pons, Andrius J Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy A Caudy, Daniel I Bolnick, Grant W Brown, Brenda J Andrews, Charles Boone, Chad L Myers
Systematic analysis of complex genetic interactions. Science (New York, N.Y.) 360 (6386) (2018)
Ji-Young Youn, Helena Friesen, Alex N Nguyen Ba, Wendy Liang, Vincent Messier, Mike J Cox, Alan M Moses, Brenda J Andrews
Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library. G3 (Bethesda, Md.) 7 (3) (2017)
Oren Z Kraus, Ben T Grys, Jimmy Ba, Yolanda Chong, Brendan J Frey, Charles Boone, Brenda J Andrews
Automated analysis of high-content microscopy data with deep learning. Molecular systems biology 13 (4) (2017)
Ben T Grys, Dara S Lo, Nil Sahin, Oren Z Kraus, Quaid Morris, Charles Boone, Brenda J Andrews
Machine learning and computer vision approaches for phenotypic profiling. The Journal of cell biology 216 (1) (2016)