John P Vogel (John Vogel)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 32

Top Venues

The Plant journal : for cell and molecular biology

Plant physiology

The New phytologist

eLife

University of California Berkeley

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Berkeley

United States

Adjunt Professor :: Plant and Microbial Biology

DOE Joint Genome Institute

United States

Lead Plant Functional Genomics group

Publications

Bryn N K Lopez, Paulo Henrique de Oliveira Ceciliato, Yohei Takahashi, Felipe J Rangel, Evana A Salem, Klara Kernig, Kelly Chow, Li Zhang, Morgana A Sidhom, Christian G Seitz, Tingwen Zheng, Richard Sibout, Debbie L Laudencia-Chingcuanco, Daniel P Woods, James Andrew McCammon, John P Vogel, Julian I Schroeder
CO2 Response Screen in Grass Brachypodium Reveals Key Role of a MAP Kinase in CO2-Triggered Stomatal Closure. Plant physiology (2024)
Joshua H Coomey, Kirk J-M MacKinnon, Ian W McCahill, Bahman Khahani, Pubudu P Handakumbura, Gina M Trabucco, Jessica Mazzola, Nicole A Leblanc, Rithany Kheam, Miriam Hernandez-Romero, Kerrie W Barry, Lifeng Liu, Ji E Lee, John P Vogel, Ronan C O'Malley, James J Chambers, Samuel P Hazen
Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression. Quantitative plant biology 5 (2024)
Miguel Campos, Ernesto Pérez-Collazos, Antonio Díaz-Pérez, Diana Lopez-Alvarez, Ali Oumouloud, Luis Alejandro Jose Mur, John P Vogel, Pilar Catalan
Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei. Molecular ecology (2024)
Bryn N K Lopez, Paulo Henrique de Oliveira Ceciliato, Yohei Takahashi, Felipe J Rangel, Evana A Salem, Klara Kernig, Kelly Chow, Li Zhang, Morgana A Sidhom, Christian G Seitz, Tingwen Zheng, Richard Sibout, Debbie L Laudencia-Chingcuanco, Daniel P Woods, James Andrew McCammon, John P Vogel, Julian I Schroeder
CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure. Plant physiology 196 (1) (2024)
Bryn N K Lopez, Paulo Henrique de Oliveira Ceciliato, Yohei Takahashi, Felipe J Rangel, Evana A Salem, Klara Kernig, Kelly Chow, Li Zhang, Morgana A Sidhom, Christian G Seitz, Tingwen Zheng, Richard Sibout, Debbie L Laudencia-Chingcuanco, Daniel P Woods, James Andrew McCammon, John P Vogel, Julian I Schroeder
CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure. Plant physiology 196 (1) (2024)
Joshua H Coomey, Kirk J-M MacKinnon, Ian W McCahill, Bahman Khahani, Pubudu P Handakumbura, Gina M Trabucco, Jessica Mazzola, Nicole A Leblanc, Rithany Kheam, Miriam Hernandez-Romero, Kerrie W Barry, Lifeng Liu, Ji E Lee, John P Vogel, Ronan C O'Malley, James J Chambers, Samuel P Hazen
Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression. Quantitative plant biology 5 (2024)
Avinash Sreedasyam, Christopher Plott, Md Shakhawat Hossain, John T Lovell, Jerry W Jenkins, Jerry W Jenkins, Christopher Daum, Kerrie Barry, Joseph Carlson, Shengqiang Shu, Jeremy Phillips, Mojgan Amirebrahimi, Matthew Zane, Mei Wang, David Goodstein, Fabian B Haas, Manuel Hiss, Pierre-François Perroud, Sara S Jawdy, Yongil Yang, Rongbin Hu, Jenifer Johnson, Janette Kropat, Sean D Gallaher, Anna Lipzen, Eugene V Shakirov, Xiaoyu Weng, Ivone Torres-Jerez, Brock Weers, Daniel Conde, Marilia R Pappas, Lifeng Liu, Andrew Muchlinski, Hui Jiang, Christine Shyu, Pu Huang, Jose Sebastian, Carol Laiben, Alyssa Medlin, Sankalpi Carey, Alyssa A Carrell, Jin-Gui Chen, Mariano Perales, Kankshita Swaminathan, Isabel Allona, Dario Grattapaglia, Elizabeth A Cooper, Dorothea Tholl, John P Vogel, David J Weston, Xiaohan Yang, Thomas P Brutnell, Elizabeth A Kellogg, Ivan R Baxter, Michael Udvardi, Yuhong Tang, Todd C Mockler, Thomas E Juenger, John E Mullet, Stefan Andreas Rensing, Gerald A Tuskan, Sabeeha S Merchant, Gary Stacey, Jeremy Schmutz
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic acids research (2023)
Li Lei, Sean P Gordon, Lifeng Liu, Nir Sade, John T Lovell, Maria Del Mar Rubio Wilhelmi, Vasanth Singan, Avinash Sreedasyam, Rachel Hestrin, Jeremy Phillips, Bryan T Hernandez, Kerrie Barry, Shengqiang Shu, Jerry W Jenkins, Jeremy Schmutz, David M Goodstein, Roger Thilmony, Eduardo Blumwald, John P Vogel
The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum. G3 (Bethesda, Md.) (2023)
Ruben Sancho, Luis A Inda, Antonio Díaz-Pérez, David L Des Marais, Sean P Gordon, John P Vogel, Joanna Lusinska, Robert Hasterok, Bruno Contreras-Moreira, Pilar Catalan
Tracking the ancestry of known and 'ghost' homeologous subgenomes in model grass Brachypodium polyploids. The Plant journal : for cell and molecular biology 109 (6) (2022)
Qiuhong Wu, Yu Cui, Xuejiao Jin, Guoxin Wang, Lijie Yan, Chenchen Zhong, Meihua Yu, Wenli Li, Yong Wang, Ling Wang, Hao Wang, Chen Dang, Xinyu Zhang, Yongxing Chen, Panpan Zhang, Xiaofei Zhao, Jiajie Wu, Daolin Fu, Lanqin Xia, Eviatar Nevo, John P Vogel, Naxin Huo, Da-Wei Li, Yong Qiang Gu, Andrew O Jackson, Yongliang Zhang, Zhiyong Liu
The CC-NB-LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein. The New phytologist 236 (6) (2022)
Yongjie Meng, Kartikye Varshney, Norbert Incze, Eszter Badics, Muhammad Kamran, Sabrina F Davies, Larissa M F Oppermann, Kévin Magne, Marion Dalmais, Abdelhafid Bendahmane, Richard Sibout, John P Vogel, Debbie L Laudencia-Chingcuanco, Charles S Bond, Vilmos Soós, Caroline Gutjahr, Mark T Waters
KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular-mycorrhizal symbiosis in Brachypodium distachyon. The Plant journal : for cell and molecular biology 109 (6) (2022)
Kebede T Muleta, Terry Felderhoff, Noah D Winans, Rachel Walstead, Jean Rigaud Charles, J Scott Armstrong, Sujan Mamidi, Christopher Plott, John P Vogel, Peggy G Lemaux, Todd C Mockler, Jerry W Jenkins, Jeremy Schmutz, Gael Pressoir, Geoffrey P Morris
The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange. Science advances 8 (6) (2022)
Weiqi Kuang, Stefan Sanow, Jana M Kelm, Mark Müller-Linow, Peter Andeer, Dietrich Kohlheyer, Trent R Northen, John P Vogel, Michelle Watt, Borjana Arsova
N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon. Journal of experimental botany 73 (15) (2022)
Benjamin J Cole, Dominique Bergmann, Crysten E Blaby-Haas, Ian K Blaby, Kristofer E Bouchard, Siobhan M Brady, Doina Ciobanu, Devin Coleman-Derr, Samuel Leiboff, Jenny C Mortimer, Tatsuya Nobori, Seung Y Rhee, Jeremy Schmutz, Blake A Simmons, Anup K Singh, Neelima Sinha, John P Vogel, Ronan C O'Malley, Axel Visel, Diane E Dickel
Plant single-cell solutions for energy and the environment. Communications biology 4 (1) (2021)
Natalia Borowska-Zuchowska, Ales Kovařík, Ewa Robaszkiewicz, Metin Tuna, Gulsemin Savas Tuna, Sean Gordon, John P Vogel, Robert Hasterok
The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum. The Plant journal : for cell and molecular biology 103 (5) (2020)
Daniel P Woods, Yinxin Dong, Frédéric Bouché, Kevin Mayer, Leah Varner, Thomas S Ream, Nicholas Thrower, Curtis Wilkerson, Amy Cartwright, Richard Sibout, Debbie L Laudencia-Chingcuanco, John P Vogel, Richard M Amasino
Mutations in the predicted DNA polymerase subunit POLD3 result in more rapid flowering of Brachypodium distachyon. The New phytologist 227 (6) (2020)
Sean P Gordon, Bruno Contreras-Moreira, Joshua J Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S Tartaglio, Adam Session, Joel A Martin, Amy Cartwright, Andrew Katz, Vasanth R Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H Doonan, Luis Alejandro Jose Mur, Chris Plott, Jerry W Jenkins, Samuel P Hazen, Scott J Lee, Shengqiang Shu, David M Goodstein, Daniel S Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P Vogel
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature communications 11 (1) (2020)
Vanessa L Brisson, Jennifer E Schmidt, Trent R Northen, John P Vogel, Amélie C M Gaudin
Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil. Scientific reports 9 (1) (2019)
Pubudu P Handakumbura, Bryan A Stanfill, Albert Rivas-Ubach, Dan Fortin, John P Vogel, Christer Jansson
Metabotyping as a Stopover in Genome-to-Phenome Mapping. Scientific reports 9 (1) (2019)
Nelle Varoquaux, Benjamin Cole, Cheng Gao, Grady Pierroz, Christopher R Baker, Dhruv Patel-Tupper, Mary Madera, Tim Jeffers, Joy Hollingsworth, Julie Sievert, Yuko Yoshinaga, Judith A Owiti, Vasanth R Singan, Stephanie DeGraaf, Ling Xu, Matthew J Blow, Maria J Harrison, Axel Visel, Christer Jansson, Krishna K Niyogi, Robert Hutmacher, Devin Coleman-Derr, Ronan C O'Malley, John W Taylor, Jeffery Dahlberg, John P Vogel, Peggy G Lemaux, Elizabeth Purdom
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses. Proceedings of the National Academy of Sciences of the United States of America (2019)
Dawn Chiniquy, William Underwood, Jason Corwin, Andrew Ryan, Heidi Szemenyei, Candice C Lim, Solomon H Stonebloom, Devon S Birdseye, John P Vogel, Daniel Kliebenstein, Henrik Vibe Scheller, Shauna Somerville
PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens. The Plant journal : for cell and molecular biology 100 (5) (2019)
Joelle Sasse, Josefine Kant, Benjamin J Cole, Andrew P Klein, Borjana Arsova, Pascal Schläpfer, Jian Gao, Kyle Lewald, Kateryna Zhalnina, Suzanne M Kosina, Benjamin P Bowen, Daniel Treen, John P Vogel, Axel Visel, Michelle Watt, Jeffery L Dangl, Trent R Northen
Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass. The New phytologist 222 (2) (2019)
Sean P Gordon, Joshua J Levy, John P Vogel
PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution. BMC genomics 20 (1) (2019)
Jennifer E Spindel, Jeffery Dahlberg, Matthew Colgan, Joy Hollingsworth, Julie Sievert, Scott H Staggenborg, Robert Hutmacher, Christer Jansson, John P Vogel
Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought. BMC genomics 19 (1) (2018)
Yann Bourgeois, Christoph Stritt, Jean-Claude Walser, Sean P Gordon, John P Vogel, Anne C Roulin
Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon. The Plant journal : for cell and molecular biology 96 (2) (2018)
Devin Lee O'Connor, Samuel Elton, Fabrizio Ticchiarelli, Mon Mandy Hsia, John P Vogel, Ottoline Leyser
Cross-species functional diversity within the PIN auxin efflux protein family. eLife 6 (2017)
Mon Mandy Hsia, Ronan O'Malley, Amy Cartwright, Rita Nieu, Sean P Gordon, Sandra Kelly, Tina G Williams, Delilah F Wood, Yunjun Zhao, Jennifer Bragg, Mark Jordan, Markus Pauly, Joseph R Ecker, Yong Gu, John P Vogel
Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection. The Plant journal : for cell and molecular biology 91 (3) (2017)
Sean P Gordon, Bruno Contreras-Moreira, Daniel P Woods, David L Des Marais, Diane Burgess, Shengqiang Shu, Christoph Stritt, Anne C Roulin, Wendy Schackwitz, Ludmila Tyler, Joel A Martin, Anna Lipzen, Niklas Dochy, Jeremy Phillips, Kerrie Barry, Koen Geuten, Hikmet Budak, Thomas E Juenger, Richard M Amasino, Ana L Caicedo, David M Goodstein, Patrick Davidson, Luis Alejandro Jose Mur, Melania Figueroa, Michael Freeling, Pilar Catalan, John P Vogel
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. Nature communications 8 (1) (2017)
Daniel P Woods, Ryland Bednarek, Frédéric Bouché, Sean P Gordon, John P Vogel, David F Garvin, Richard M Amasino
Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon. Plant physiology 173 (1) (2016)
Michael T Raissig, Emily Abrash, Akhila Bettadapur, John P Vogel, Dominique C Bergmann
Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity. Proceedings of the National Academy of Sciences of the United States of America 113 (29) (2016)
Rubén Rellán Álvarez, Guillaume Lobet, Heike Lindner, Pierre-Luc Pradier, Jose Sebastian, Muh-Ching Yee, Yu Geng, Charlotte Trontin, Therese LaRue, Amanda Schrager-Lavelle, Cara H Haney, Rita Nieu, Julin N Maloof, John P Vogel, José R Dinneny
GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems. eLife 4 (2015)
Vincent Chochois, John P Vogel, Gregory J Rebetzke, Michelle Watt
Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments. Plant physiology 168 (3) (2015)

John P Vogel.css-eqlu8i{font-size:small;padding-left:4px;} (John Vogel)

Publication Activity (10 Years)

Top Topics

Top Venues

John P Vogel (John Vogel)