Hannele Ruohola-Baker (Cole A DeForest, H Ruohola-Baker, Yuliang Wang)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 25

Top Topics

Binding Protein

Embryonic Stem Cells

Editorial Comment

Top Venues

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Xinru Wang, Jordi Guillem-Marti, Saurav Kumar, David S Lee, Daniel Cabrerizo-Aguado, Rachel Werther, Kevin Alexander Estrada Alamo, Yan Ting Zhao, Adam Nguyen, Irina Kopyeva, Buwei Huang, Jing Li, Yuxin Hao, Xinting Li, Aritza Brizuela-Velasco, Analisa N Murray, Cole A DeForest, Timothy A Springer, Hannele Ruohola-Baker, Jonathan A Cooper, Melody G Campbell, Jose Maria Manero, Maria-Pau Ginebra, Jose Maria Manero, Maria-Pau Ginebra, Julien S Baker
De Novo Design of Integrin α5β1 Modulating Proteins for Regenerative Medicine. bioRxiv : the preprint server for biology (2024)
Xinru Wang, Jordi Guillem-Marti, Saurav Kumar, David S Lee, Daniel Cabrerizo-Aguado, Rachel Werther, Kevin Alexander Estrada Alamo, Yan Ting Zhao, Adam Nguyen, Irina Kopyeva, Buwei Huang, Jing Li, Yuxin Hao, Xinting Li, Aritza Brizuela-Velasco, Analisa Murray, Stacey Gerben, Analisa N Murray, Cole A DeForest, Timothy A Springer, Hannele Ruohola-Baker, Jonathan A Cooper, Melody G Campbell, Jose Maria Manero, Maria-Pau Ginebra, Julien S Baker
De Novo Design of Integrin α5β1 Modulating Proteins for Regenerative Medicine. bioRxiv : the preprint server for biology (2024)
Xinru Wang, Jordi Guillem-Marti, Saurav Kumar, David S Lee, Daniel Cabrerizo-Aguado, Rachel Werther, Kevin Alexander Estrada Alamo, Yan Ting Zhao, Adam Nguyen, Irina Kopyeva, Buwei Huang, Jing Li, Yuxin Hao, Xinting Li, Aritza Brizuela-Velasco, Analisa Murray, Stacey Gerben, Analisa N Murray, Cole A DeForest, Timothy A Springer, Hannele Ruohola-Baker, Jonathan A Cooper, Melody G Campbell, Jose Maria Manero, Maria-Pau Ginebra, Julien S Baker
De Novo Design of Integrin α5β1 Modulating Proteins for Regenerative Medicine. bioRxiv : the preprint server for biology (2024)
Xinru Wang, Jordi Guillem-Marti, Saurav Kumar, David S Lee, Daniel Cabrerizo-Aguado, Rachel Werther, Kevin Alexander Estrada Alamo, Yan Ting Zhao, Adam Nguyen, Irina Kopyeva, Buwei Huang, Jing Li, Yuxin Hao, Xinting Li, Aritza Brizuela-Velasco, Analisa Murray, Stacey Gerben, Analisa N Murray, Cole A DeForest, Timothy A Springer, Hannele Ruohola-Baker, Jonathan A Cooper, Melody G Campbell, Jose Maria Manero, Maria-Pau Ginebra, Julien S Baker
De Novo Design of Integrin α5β1 Modulating Proteins for Regenerative Medicine. bioRxiv : the preprint server for biology (2024)
Isaac D Lutz, Shunzhi Wang, Christoffer H Norn, Alexis Courbet, Andrew J Borst, Yan Ting Zhao, Annie M Dosey, Longxing Cao, Jinwei Xu, Elizabeth M Leaf, Catherine Treichel, Patrisia Litvicov, Zhe Li, Alexander D Goodson, Paula Rivera-Sánchez, Ana-Maria Bratovianu, Minkyung Baek, Neil P King, Hannele Ruohola-Baker, Julien S Baker
Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.) 380 (6642) (2023)
Natasha I Edman, Rachel L Redler, Ashish Phal, Thomas Schlichthaerle, Sanjay R Srivatsan, Ali Etemadi, Seong An, Andrew Favor, Devon Ehnes, Zhe Li, Florian Praetorius, Max Gordon, Wei Yang, Brian Coventry, Derrick R Hicks, Longxing Cao, Neville Bethel, Piper Heine, Analisa N Murray, Stacey Gerben, Lauren Carter, Marcos Miranda, Babak Negahdari, Sangwon Lee, Cole Trapnell, Lance Stewart, Damian C Ekiert, Joseph Schlessinger, Jay Shendure, Gira Bhabha, Hannele Ruohola-Baker, David Baker
Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies. bioRxiv : the preprint server for biology (2023)
Isaac D Lutz, Shunzhi Wang, Christoffer H Norn, Alexis Courbet, Andrew J Borst, Yan Ting Zhao, Annie M Dosey, Longxing Cao, Jinwei Xu, Elizabeth M Leaf, Catherine Treichel, Patrisia Litvicov, Zhe Li, Alexander D Goodson, Paula Rivera-Sánchez, Ana-Maria Bratovianu, Minkyung Baek, Neil P King, Hannele Ruohola-Baker, Julien S Baker
Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.) 380 (6642) (2023)
Isaac D Lutz, Shunzhi Wang, Christoffer H Norn, Alexis Courbet, Andrew J Borst, Yan Ting Zhao, Annie M Dosey, Longxing Cao, Jinwei Xu, Elizabeth M Leaf, Catherine Treichel, Patrisia Litvicov, Zhe Li, Alexander D Goodson, Paula Rivera-Sánchez, Ana-Maria Bratovianu, Minkyung Baek, Neil P King, Hannele Ruohola-Baker, Julien S Baker
Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.) 380 (6642) (2023)
Isaac D Lutz, Shunzhi Wang, Christoffer H Norn, Alexis Courbet, Andrew J Borst, Yan Ting Zhao, Annie M Dosey, Longxing Cao, Jinwei Xu, Elizabeth M Leaf, Catherine Treichel, Patrisia Litvicov, Zhe Li, Alexander D Goodson, Paula Rivera-Sánchez, Ana-Maria Bratovianu, Minkyung Baek, Neil P King, Hannele Ruohola-Baker, Julien S Baker
Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.) 380 (6642) (2023)
Isaac D Lutz, Shunzhi Wang, Christoffer H Norn, Alexis Courbet, Andrew J Borst, Yan Ting Zhao, Annie M Dosey, Longxing Cao, Jinwei Xu, Elizabeth M Leaf, Catherine Treichel, Patrisia Litvicov, Zhe Li, Alexander D Goodson, Paula Rivera-Sánchez, Ana-Maria Bratovianu, Minkyung Baek, Neil P King, Hannele Ruohola-Baker, Julien S Baker
Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.) 380 (6642) (2023)
Isaac D Lutz, Shunzhi Wang, Christoffer H Norn, Alexis Courbet, Andrew J Borst, Yan Ting Zhao, Annie M Dosey, Longxing Cao, Jinwei Xu, Elizabeth M Leaf, Catherine Treichel, Patrisia Litvicov, Zhe Li, Alexander D Goodson, Paula Rivera-Sánchez, Ana-Maria Bratovianu, Minkyung Baek, Neil P King, Hannele Ruohola-Baker, Julien S Baker
Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.) 380 (6642) (2023)
Isaac D Lutz, Shunzhi Wang, Christoffer H Norn, Alexis Courbet, Andrew J Borst, Yan Ting Zhao, Annie M Dosey, Longxing Cao, Jinwei Xu, Elizabeth M Leaf, Catherine Treichel, Patrisia Litvicov, Zhe Li, Alexander D Goodson, Paula Rivera-Sánchez, Ana-Maria Bratovianu, Minkyung Baek, Neil P King, Hannele Ruohola-Baker, Julien S Baker
Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.) 380 (6642) (2023)
Logeshwaran Somasundaram, Nanditaa Balachandar, Julie Mathieu, Hannele Ruohola-Baker
Molecular Regulators of Embryonic Diapause and Cancer Diapause-like State. Cells 11 (19) (2022)
Andrew C Hunt, James Brett Case, Young-Jun Park, Longxing Cao, Kejia Wu, Alexandra C Walls, Zhuoming Liu, John E Bowen, Andy Hsien-Wei Yeh, Shally Saini, Louisa Helms, Yan Ting Zhao, Tien-Ying Hsiang, Tyler N Starr, Inna Goreshnik, Lisa Kozodoy, Lauren Carter, Rashmi Ravichandran, Lydia B Green, Wadim L Matochko, Christy A Thomson, Bastian Vögeli, Antje Krüger, Laura A VanBlargan, Rita E Chen, Baoling Ying, Adam L Bailey, Natasha M Kafai, Scott E Boyken, Ajasja Ljubetič, Natasha I Edman, George Ueda, Cameron M Chow, Max Johnson, Amin Addetia, Mary-Jane Navarro, Nuttada Panpradist, Michael Gale, Benjamin S Freedman, Jesse D Bloom, Hannele Ruohola-Baker, Sean P J Whelan, Lance J Stewart, Michael S. Diamond, David J Veesler, Michael C Jewett, Julien S Baker
Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice. Science translational medicine 14 (646) (2022)
Longxing Cao, Brian Coventry, Inna Goreshnik, Buwei Huang, William Sheffler, Joon Sung Park, Kevin M Jude, Iva Marković, Rameshwar U Kadam, Koen H G Verschueren, Kenneth Verstraete, Scott Thomas Russell Walsh, Nathaniel Bennett, Ashish Phal, Aerin Yang, Lisa Kozodoy, Michelle DeWitt, Lora K Picton, Lauren Miller, Eva-Maria Strauch, Nicholas D DeBouver, Allison Pires, Asim K Bera, Samer Halabiya, Bradley Hammerson, Wei Yang, Steffen Bernard, Lance J Stewart, Ian A Wilson, Hannele Ruohola-Baker, Joseph Schlessinger, Sangwon Lee, Savvas N Savvides, K Christopher Garcia, Julien S Baker
Design of protein-binding proteins from the target structure alone. Nature 605 (7910) (2022)
Ariel J Ben-Sasson, Joseph L Watson, William Sheffler, Matthew Camp Johnson, Alice Bittleston, Logeshwaran Somasundaram, Justin Decarreau, Fang Jiao, Jiajun Chen, Ioanna Mela, Andrew A Drabek, Sanchez M Jarrett, Stephen C Blacklow, Clemens F Kaminski, Greg L Hura, James J De Yoreo, Justin M Kollman, Hannele Ruohola-Baker, Emmanuel Derivery, Julien S Baker
Design of biologically active binary protein 2D materials. Nature 589 (7842) (2021)
Robby Divine, Ha V Dang, George Ueda, Jorge A Fallas, Ivan Vulovic, William Sheffler, Shally Saini, Yan Ting Zhao, Infencia Xavier Raj, Peter A Morawski, Madeleine F Jennewein, Leah J Homad, Yu-Hsin Wan, Marti R Tooley, Franziska Seeger, Ali Etemadi, Mitchell L Fahning, James Lazarovits, Alexander Roederer, Alexandra C Walls, Lance J Stewart, Mohammadali Mazloomi, Neil P King, Daniel J Campbell, Andrew T McGuire, Leonidas Stamatatos, Hannele Ruohola-Baker, Julie Mathieu, David J Veesler, Julien S Baker
Designed proteins assemble antibodies into modular nanocages. Science (New York, N.Y.) 372 (6537) (2021)
Yan Ting Zhao, Jorge A Fallas, Shally Saini, George Ueda, Logeshwaran Somasundaram, Ziben Zhou, Infencia Xavier Raj, Chunfu Xu, Lauren Carter, Samuel Wrenn, Julie Mathieu, Drew L Sellers, Julien S Baker, Hannele Ruohola-Baker
F-domain valency determines outcome of signaling through the angiopoietin pathway. EMBO reports 22 (12) (2021)
Julien Roy Ishibashi, Riya Keshri, Tommy Henry Taslim, Daniel Kennedy Brewer, Tung Ching Chan, Scott Lyons, Anika Marie McManamen, Ashley Chen, Debra Del Castillo, Hannele Ruohola-Baker
Chemical Genetic Screen in Drosophila Germline Uncovers Small Molecule Drugs That Sensitize Stem Cells to Insult-Induced Apoptosis. Cells 10 (10) (2021)
Hannele Ruohola-Baker, Abdiasis M Hussein, Logeshwaran Somasundaram, Rithika Sankar, Damien Detraux, Julie Mathieu, Hannele Ruohola-Baker
microRNAs Regulating Human and Mouse Naïve Pluripotency. International journal of molecular sciences 20 (23) (2019)
J Mathieu, D Detraux, D Kuppers, Y Wang, C Cavanaugh, S Sidhu, S Levy, A M Robitaille, A Ferreccio, T Bottorff, A McAlister, L Somasundaram, F Artoni, S Battle, R D Hawkins, R T Moon, C B Ware, P J Paddison, Hannele Ruohola-Baker
Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency. Nature communications 10 (1) (2019)
Amy Ferreccio, Julie Mathieu, Logeshwaran Somasundaram, Christopher Cavanaugh, Bryce Sopher, Thomas Bello, Abdiasis M Hussein, Shiri Levy, Savannah Cook, Sonia B Sidhu, Nathan J Palpant, Hans Reinecke, Yuliang Wang, Patrick Paddison, Charles E Murry, Suman Jayadev, Carol B Ware, Hannele Ruohola-Baker
Inducible CRISPR genome editing platform in naive human embryonic stem cells reveals JARID2 function in self-renewal. Cell cycle (Georgetown, Tex.) 17 (5) (2018)
Julie Mathieu, Hannele Ruohola-Baker
Metabolic remodeling during the loss and acquisition of pluripotency. Development (Cambridge, England) 144 (4) (2017)
James D Moody, Shiri Levy, Julie Mathieu, Yalan Xing, Woojin Kim, Cheng Dong, Wolfram Tempel, Aaron M Robitaille, Luke T Dang, Amy Ferreccio, Damien Detraux, Sonia Sidhu, Licheng Zhu, Lauren Carter, Chao Xu, Cristina Valensisi, Yuliang Wang, R David Hawkins, Jinrong Min, Randall T Moon, Stuart H Orkin, David Baker, Hannele Ruohola-Baker
First critical repressive H3K27me3 marks in embryonic stem cells identified using designed protein inhibitor. Proceedings of the National Academy of Sciences of the United States of America 114 (38) (2017)
Sonia B Sidhu, Rebecca E Kreipke, Ondina Palmeira, Connor Dixon, Zachary Goldberg, Hannele Ruohola-Baker
Loss of foxo rescues stem cell aging in Drosophila germ line. eLife 6 (2017)