I-Min A Chen (I-Min Chen)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 18

Top Topics

Microbial Community

Loop Mediated Isothermal Amplification

Arabidopsis Thaliana

Top Venues

Microbiology resource announcements

Nucleic acids research

Database : the journal of biological databases and curation

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Fotis A Baltoumas, Evangelos Karatzas, Sirui Liu, Sergey Ovchinnikov, Yorgos Sofianatos, I-Min A Chen, Nikos C Kyrpides, Georgios A Pavlopoulos
NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes. Nucleic acids research (2023)
Supratim Mukherjee, Galina Ovchinnikova, Dimitri Stamatis, Cindy Tianqing Li, I-Min A Chen, Nikos C Kyrpides, T B K Reddy
Standardized naming of microbiome samples in Genomes OnLine Database. Database : the journal of biological databases and curation 2023 (2023)
Supratim Mukherjee, Galina Ovchinnikova, Dimitri Stamatis, Cindy Tianqing Li, I-Min A Chen, Nikos C Kyrpides, T B K Reddy
Standardized naming of microbiome samples in Genomes OnLine Database. Database : the journal of biological databases and curation 2023 (2023)
Supratim Mukherjee, Galina Ovchinnikova, Dimitri Stamatis, Cindy Tianqing Li, I-Min A Chen, Nikos C Kyrpides, T B K Reddy
Standardized naming of microbiome samples in Genomes OnLine Database. Database : the journal of biological databases and curation 2023 (2023)
Antonio Pedro Camargo, Lee Call, Simon Roux, Stephen Nayfach, Marcel Huntemann, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Supratim Mukherjee, T B K Reddy, I-Min A Chen, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Tanja Woyke, David A Baltrus, Salvador Castañeda-Barba, María de Toro, Barbara E Funnell, James P J Hall, Aindrila Mukhopadhyay, Eduardo P C Rocha, Thibault Stalder, Eva M Top, Nikos C Kyrpides
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids research (2023)
Antonio Pedro Camargo, Stephen Nayfach, I-Min A Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan J Ritter, T B K Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y Neches, Tanja Woyke, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Simon Roux
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. Nucleic acids research (2022)
Supratim Mukherjee, Dimitri Stamatis, Cindy Tianqing Li, Galina Ovchinnikova, Jon Bertsch, Jagadish Chandrabose Sundaramurthi, Mahathi Kandimalla, Paul A Nicolopoulos, Alessandro Favognano, I-Min A Chen, Nikos C Kyrpides, T B K Reddy
Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9. Nucleic acids research (2022)
I-Min A Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan J Ritter, Cody Webb, Dongying Wu, Neha J Varghese, T B K Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Natalia N Ivanova
The IMG/M data management and analysis system v.7: content updates and new features. Nucleic acids research (2022)
Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel W Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, A David Páez-Espino, I-Min A Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T B K Reddy, Torben Nielsen, Edward Kirton, José P Faria, Janaka N Edirisinghe, Christopher S Henry, Sean P Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M Wood-Charlson, Adam P Arkin, Susannah G Tringe, Axel Visel, null null, Tanja Woyke, Nigel J Mouncey, Natalia N Ivanova, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
Publisher Correction: A genomic catalog of Earth's microbiomes. Nature biotechnology (2020)
Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel W Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, A David Páez-Espino, I-Min A Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T B K Reddy, Torben Nielsen, Edward Kirton, José P Faria, Janaka N Edirisinghe, Christopher S Henry, Sean P Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M Wood-Charlson, Adam P Arkin, Susannah G Tringe, Axel Visel, null null, Tanja Woyke, Nigel J Mouncey, Natalia N Ivanova, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
A genomic catalog of Earth's microbiomes. Nature biotechnology 39 (4) (2020)