Marcel Huntemann

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 28

Top Topics

Arabidopsis Thaliana

Antibiotic Resistance Genes

Microbial Community

Top Venues

Microbiology resource announcements

The ISME journal

Scientific data

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T B K Reddy, Sara Calhoun, Richard D Hayes, Robin R Rohwer, Zhichao Zhou, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Nigel J Mouncey, Tijana Glavina Del Rio, Igor V Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D McMahon, Tanja Woyke, Emiley A Eloe-Fadrosh
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota. Scientific data 11 (1) (2024)
Antonio Pedro Camargo, Lee Call, Simon Roux, Stephen Nayfach, Marcel Huntemann, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Supratim Mukherjee, T B K Reddy, I-Min A Chen, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Tanja Woyke, David A Baltrus, Salvador Castañeda-Barba, María de Toro, Barbara E Funnell, James P J Hall, Aindrila Mukhopadhyay, Eduardo P C Rocha, Thibault Stalder, Eva M Top, Nikos C Kyrpides
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids research (2023)
Antonio Pedro Camargo, Rafael Soares Correa de Souza, Juliana José, Isabel Rodrigues Gerhardt, Ricardo Augusto Dante, Supratim Mukherjee, Marcel Huntemann, Nikos C Kyrpides, Marcelo F Carazzolle, Paulo Arruda
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME journal (2022)
Antonio Pedro Camargo, Rafael Soares Correa de Souza, Juliana José, Isabel Rodrigues Gerhardt, Ricardo Augusto Dante, Supratim Mukherjee, Marcel Huntemann, Nikos C Kyrpides, Marcelo F Carazzolle, Paulo Arruda
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME journal 17 (3) (2022)
Antonio Pedro Camargo, Rafael Soares Correa de Souza, Juliana José, Isabel Rodrigues Gerhardt, Ricardo Augusto Dante, Supratim Mukherjee, Marcel Huntemann, Nikos C Kyrpides, Marcelo F Carazzolle, Paulo Arruda
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME journal (2022)
Antonio Pedro Camargo, Rafael Soares Correa de Souza, Juliana José, Isabel Rodrigues Gerhardt, Ricardo Augusto Dante, Supratim Mukherjee, Marcel Huntemann, Nikos C Kyrpides, Marcelo F Carazzolle, Paulo Arruda
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME journal (2022)
Antonio Pedro Camargo, Rafael Soares Correa de Souza, Juliana José, Isabel Rodrigues Gerhardt, Ricardo Augusto Dante, Supratim Mukherjee, Marcel Huntemann, Nikos C Kyrpides, Marcelo F Carazzolle, Paulo Arruda
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME journal 17 (3) (2022)
I-Min A Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan J Ritter, Cody Webb, Dongying Wu, Neha J Varghese, T B K Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A Eloe-Fadrosh, Nikos C Kyrpides, Natalia N Ivanova
The IMG/M data management and analysis system v.7: content updates and new features. Nucleic acids research (2022)
Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A Boulton, Kerrie Barry, Bánk Beszteri, Corina P D Brussaard, Alicia Clum, Christopher Daum, Emiley A Eloe-Fadrosh, Allison Fong, Brian Foster, Bryce Foster, Michael Ginzburg, Marcel Huntemann, Natalia N Ivanova, Nikos C Kyrpides, Erika Lindquist, Supratim Mukherjee, Krishnaveni Palaniappan, T B K Reddy, Mariam R Rizkallah, Simon Roux, Klaas Timmermans, Susannah G Tringe, Willem H van de Poll, Neha Varghese, Klaus U Valentin, Timothy M Lenton, Igor V Grigoriev, Richard M Leggett, Vincent Moulton, Thomas Mock
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole. Nature communications 12 (1) (2021)
Alicia Clum, Marcel Huntemann, Brian Bushnell, Brian Foster, Bryce Foster, Simon Roux, Patrick P Hajek, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Yuko Yoshinaga, Ronan O'Malley, Rekha Seshadri, Nikos C Kyrpides, Emiley A Eloe-Fadrosh, I-Min A Chen, Alex Copeland, Natalia N Ivanova
DOE JGI Metagenome Workflow. mSystems 6 (3) (2021)
Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel W Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, A David Páez-Espino, I-Min A Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T B K Reddy, Torben Nielsen, Edward Kirton, José P Faria, Janaka N Edirisinghe, Christopher S Henry, Sean P Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M Wood-Charlson, Adam P Arkin, Susannah G Tringe, Axel Visel, null null, Tanja Woyke, Nigel J Mouncey, Natalia N Ivanova, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
Publisher Correction: A genomic catalog of Earth's microbiomes. Nature biotechnology (2020)
Stephen Nayfach, Simon Roux, Rekha Seshadri, Daniel W Udwary, Neha Varghese, Frederik Schulz, Dongying Wu, A David Páez-Espino, I-Min A Chen, Marcel Huntemann, Krishna Palaniappan, Joshua Ladau, Supratim Mukherjee, T B K Reddy, Torben Nielsen, Edward Kirton, José P Faria, Janaka N Edirisinghe, Christopher S Henry, Sean P Jungbluth, Dylan Chivian, Paramvir Dehal, Elisha M Wood-Charlson, Adam P Arkin, Susannah G Tringe, Axel Visel, null null, Tanja Woyke, Nigel J Mouncey, Natalia N Ivanova, Nikos C Kyrpides, Emiley A Eloe-Fadrosh
A genomic catalog of Earth's microbiomes. Nature biotechnology 39 (4) (2020)
Brent Nowinski, Christa B Smith, Courtney M Thomas, Kaitlin Esson, Roman Marin, Christina M Preston, James M Birch, Christopher A Scholin, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Tijana Glavina Del Rio, William B Whitman, Ronald P Kiene, Emiley A Eloe-Fadrosh, Mary Ann Moran
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. Scientific data 6 (1) (2019)
Eva Högfors-Rönnholm, Margarita Lopez-Fernandez, Stephan Christel, Diego Brambilla, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Daniel Lundin, Sten Engblom, Mark Dopson
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials. Scientific data 6 (1) (2019)
Arantxa Peña, Antonio Busquets, Margarita Gomila, Magdalena Mulet, Rosa M Gomila, Elena Garcia-Valdes, T B K Reddy, Marcel Huntemann, Neha Varghese, Natalia Ivanova, I-Min Chen, Markus Göker, Tanja Woyke, Hans-Peter Klenk, Nikos Kyrpides, Jorge Lalucat
High-quality draft genome sequences of Pseudomonas monteilii DSM 14164T, Pseudomonas mosselii DSM 17497T, Pseudomonas plecoglossicida DSM 15088T, Pseudomonas taiwanensis DSM 21245T and Pseudomonas vranovensis DSM 16006T: taxonomic considerations. Access microbiology 1 (10) (2019)
Antonio Pedro Camargo, Rafael Soares Correa de Souza, Patrícia de Britto Costa, Isabel Rodrigues Gerhardt, Ricardo Augusto Dante, Grazielle Sales Teodoro, Anna Abrahão, Hans Lambers, Marcelo Falsarella Carazzolle, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Chris Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paulo Arruda, Rafael Silva Oliveira
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. Scientific data 6 (1) (2019)