Christopher Daum (Chris Daum, Chris G Daum)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 49

Top Topics

Arabidopsis Thaliana

Respiratory Syndrome Coronavirus

Genome Wide Association Study

Top Venues

Microbiology resource announcements

Nature genetics

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements 13 (2) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Supratim Mukherjee, Patrick Hajek, T B K Reddy, Christopher Daum, I-Min A Chen, Christa Pennacchio, Emiley A Eloe-Fadrosh, Paul Dijkstra, Mary K Firestone, Steven J Blazewicz, Jennifer Pett-Ridge
Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology resource announcements 13 (6) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting. Microbiology resource announcements (2024)
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T B K Reddy, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Miranda Harmon-Smith, Emiley A Eloe-Fadrosh, Nicole Pietrasiak, Jason E Stajich, Erik F Y Hom
Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert. Microbiology resource announcements 13 (3) (2024)
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T B K Reddy, Sara Calhoun, Richard D Hayes, Robin R Rohwer, Zhichao Zhou, Christopher Daum, Alex Copeland, I-Min A Chen, Natalia N Ivanova, Nikos C Kyrpides, Nigel J Mouncey, Tijana Glavina Del Rio, Igor V Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D McMahon, Tanja Woyke, Emiley A Eloe-Fadrosh
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota. Scientific data 11 (1) (2024)
Vayu Maini Rekdal, José Manuel Villalobos-Escobedo, Nabila Rodriguez-Valeron, Mikel Olaizola Garcia, Diego Prado Vásquez, Alexander Rosales, Pia M Sörensen, Edward E K Baidoo, Ana Calheiros de Carvalho, Robert Riley, Anna Lipzen, Guifen He, Mi Yan, Sajeet Haridas, Christopher Daum, Yuko Yoshinaga, Vivian Ng, Igor V Grigoriev, Rasmus Munk, Christofora Hanny Wijaya, Lilis Nuraida, Isty Damayanti, Pablo Cruz-Morales, Jay D Keasling
Neurospora intermedia from a traditional fermented food enables waste-to-food conversion. Nature microbiology (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Günter Theißen, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature genetics 56 (5) (2024)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Danuše Tarkowská, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. bioRxiv : the preprint server for biology (2023)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Danuše Tarkowská, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. bioRxiv : the preprint server for biology (2023)
Jin Zhang, Xiaqin Wang, Hsin-Tzu Wang, Zhenzhen Qiao, Tao Yao, Meng Xie, Breeanna R Urbanowicz, Wei Zeng, Sara S Jawdy, Lee E Gunter, Xiaohan Yang, Olaf Czarnecki, Sharon Regan, Armand Séguin, William Rottmann, Kimberly A Winkeler, Robert W Sykes, Anna Lipzen, Christopher Daum, Kerrie W Barry, Meng-Zhu Lu, Gerald A Tuskan, Wellington Muchero, Jin-Gui Chen
Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus. Plant physiology (2023)
Alice Feurtey, Cécile Lorrain, Megan C McDonald, Andrew W Milgate, Peter S Solomon, Rachael Warren, Guido Puccetti, Gabriel Scalliet, Stefano F F Torriani, Lilian Gout, Thierry C Marcel, Frédéric Suffert, Julien Alassimone, Anna Lipzen, Yuko Yoshinaga, Christopher Daum, Kerrie Barry, Igor V Grigoriev, Stephen B Goodwin, Anne Genissel, Michael F Seidl, Eva Holtgrewe Stukenbrock, Marc-Henri Lebrun, Gerrit H J Kema, Bruce Alan McDonald, Daniel Croll
A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature communications 14 (1) (2023)
Rory J Craig, Sean D Gallaher, Shengqiang Shu, Patrice A Salomé, Jerry W Jenkins, Crysten E Blaby-Haas, Samuel Owen Purvine, Samuel O'Donnell, Kerrie W Barry, Jerry W Jenkins, Daniela Strenkert, Janette Kropat, Christopher Daum, Yuko Yoshinaga, David M Goodstein, Olivier Vallon, Jeremy Schmutz, Sabeeha S Merchant
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory. The Plant cell 35 (2) (2023)
Alice Feurtey, Cécile Lorrain, Megan C McDonald, Andrew W Milgate, Peter S Solomon, Rachael Warren, Guido Puccetti, Gabriel Scalliet, Stefano F F Torriani, Lilian Gout, Thierry C Marcel, Frédéric Suffert, Julien Alassimone, Anna Lipzen, Yuko Yoshinaga, Christopher Daum, Kerrie Barry, Igor V Grigoriev, Stephen B Goodwin, Anne Genissel, Michael F Seidl, Eva Holtgrewe Stukenbrock, Marc-Henri Lebrun, Gerrit H J Kema, Bruce Alan McDonald, Daniel Croll
A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature communications 14 (1) (2023)
Alice Feurtey, Cécile Lorrain, Megan C McDonald, Andrew W Milgate, Peter S Solomon, Rachael Warren, Guido Puccetti, Gabriel Scalliet, Stefano F F Torriani, Lilian Gout, Thierry C Marcel, Frédéric Suffert, Julien Alassimone, Anna Lipzen, Yuko Yoshinaga, Christopher Daum, Kerrie Barry, Igor V Grigoriev, Stephen B Goodwin, Anne Genissel, Michael F Seidl, Eva Holtgrewe Stukenbrock, Marc-Henri Lebrun, Gerrit H J Kema, Bruce Alan McDonald, Daniel Croll
A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature communications 14 (1) (2023)
Reid Longley, Aaron J Robinson, Julian A Liber, Abigail E Bryson, Demosthenes P Morales, Kurt M LaButti, Robert Riley, Stephen J Mondo, Alan Kuo, Yuko Yoshinaga, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Alessandro Desirò, Patrick S G Chain, Gregory M Bonito
Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi. Communications biology 6 (1) (2023)
Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M R Fürst-Jansen, Armin Dadras, Jaccoline M S Zegers, Tim P Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B Haas, Noe Fernandez Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W Scott Grayburn, Nina Rittmeier, Charlotte Permann, Florian Rümpler, John M Archibald, Danuše Tarkowská, Jeffrey P Mower, Maike Lorenz, Henrik Buschmann, Klaus von Schwartzenberg, Lori Boston, Richard D Hayes, Christopher Daum, Kerrie W Barry, Igor V Grigoriev, Xiyin Wang, Fay-Wei Li, Stefan Andreas Rensing, Julius Ben Ari, Noa Keren, Assaf Mosquna, Andreas Holzinger, Pierre-Marc Delaux, Chi Zhang, Jinling Huang, Marek Mutwil, Jan de Vries, Yanbin Yin
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution. bioRxiv : the preprint server for biology (2023)
Jeffrey A Kimbrel, Joseph Moon, Aram Avila-Herrera, Jose Manuel Martí, James Thissen, Nisha Mulakken, Sarah H Sandholtz, Tyshawn Ferrell, Christopher Daum, Sara Hall, Brent Segelke, Kathryn T Arrildt, Sharon Messenger, Debra A Wadford, Crystal Jaing, Jonathan E Allen, Monica K Borucki
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples. Viruses 14 (12) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Jeffrey A Kimbrel, Joseph Moon, Aram Avila-Herrera, Jose Manuel Martí, James Thissen, Nisha Mulakken, Sarah H Sandholtz, Tyshawn Ferrell, Christopher Daum, Sara Hall, Brent Segelke, Kathryn T Arrildt, Sharon Messenger, Debra A Wadford, Crystal Jaing, Jonathan E Allen, Monica K Borucki
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples. Viruses 14 (12) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry W Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Christopher Plott, Yuko Yoshinga, Christopher Daum, Peng Qi, Kerrie Barry, Anna Lipzen, Luke Berry, Connor Pedersen, Thomas Gottilla, Ashley Foltz, Huihui Yu, Ronan C O'Malley, Chi Zhang, Katrien M Devos, Brandi Sigmon, Bin Yu, Toshihiro Obata, Jeremy Schmutz, Osler A Ortez
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass. Nature communications 13 (1) (2022)
Kathryn J Michel, Dayane Cristina Lima, Hope Hundley, Vasanth R Singan, Yuko Yoshinaga, Christopher Daum, Kerrie W Barry, Karl W Broman, Carol Robin Buell, Natalia de Leon, Shawn M Kaeppler
Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population. Genetics 221 (2) (2022)
Jeffrey A Kimbrel, Joseph Moon, Aram Avila-Herrera, Jose Manuel Martí, James Thissen, Nisha Mulakken, Sarah H Sandholtz, Tyshawn Ferrell, Christopher Daum, Sara Hall, Brent Segelke, Kathryn T Arrildt, Sharon Messenger, Debra A Wadford, Crystal Jaing, Jonathan E Allen, Monica K Borucki
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples. Viruses 14 (12) (2022)
Jeffrey A Kimbrel, Joseph Moon, Aram Avila-Herrera, Jose Manuel Martí, James Thissen, Nisha Mulakken, Sarah H Sandholtz, Tyshawn Ferrell, Christopher Daum, Sara Hall, Brent Segelke, Kathryn T Arrildt, Sharon Messenger, Debra A Wadford, Crystal Jaing, Jonathan E Allen, Monica K Borucki
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples. Viruses 14 (12) (2022)
Jeffrey A Kimbrel, Joseph Moon, Aram Avila-Herrera, Jose Manuel Martí, James Thissen, Nisha Mulakken, Sarah H Sandholtz, Tyshawn Ferrell, Christopher Daum, Sara Hall, Brent Segelke, Kathryn T Arrildt, Sharon Messenger, Debra A Wadford, Crystal Jaing, Jonathan E Allen, Monica K Borucki
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples. Viruses 14 (12) (2022)
Jeffrey A Kimbrel, Joseph Moon, Aram Avila-Herrera, Jose Manuel Martí, James Thissen, Nisha Mulakken, Sarah H Sandholtz, Tyshawn Ferrell, Christopher Daum, Sara Hall, Brent Segelke, Kathryn T Arrildt, Sharon Messenger, Debra A Wadford, Crystal Jaing, Jonathan E Allen, Monica K Borucki
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples. Viruses 14 (12) (2022)
Marc W Van Goethem, Andrew R Osborn, Benjamin P Bowen, Peter F Andeer, Tami L Swenson, Alicia Clum, Robert Riley, Guifen He, Maxim Koriabine, Laura Sandor, Mi Yan, Christopher Daum, Yuko Yoshinaga, Thulani Peter Makhalanyane, Ferran Garcia-Pichel, Axel Visel, Len A Pennacchio, Ronan C O'Malley, Trent R Northen
Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics. Communications biology 4 (1) (2021)
Sara Calhoun, Tisza Ann Szeremy Bell, Lukas R Dahlin, Yuliya Kunde, Kurt M LaButti, Katherine B Louie, Andrea Kuftin, Daniel G C Treen, David Dilworth, Sirma Mihaltcheva, Christopher Daum, Benjamin P Bowen, Trent R Northen, Michael T Guarnieri, Shawn R Starkenburg, Igor V Grigoriev
A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology. Communications biology 4 (1) (2021)
Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A Boulton, Kerrie Barry, Bánk Beszteri, Corina P D Brussaard, Alicia Clum, Christopher Daum, Emiley A Eloe-Fadrosh, Allison Fong, Brian Foster, Bryce Foster, Michael Ginzburg, Marcel Huntemann, Natalia N Ivanova, Nikos C Kyrpides, Erika Lindquist, Supratim Mukherjee, Krishnaveni Palaniappan, T B K Reddy, Mariam R Rizkallah, Simon Roux, Klaas Timmermans, Susannah G Tringe, Willem H van de Poll, Neha Varghese, Klaus U Valentin, Timothy M Lenton, Igor V Grigoriev, Richard M Leggett, Vincent Moulton, Thomas Mock
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole. Nature communications 12 (1) (2021)
Sarah B Carey, Jerry W Jenkins, John T Lovell, Florian Maumus, Avinash Sreedasyam, Adam C Payton, Shengqiang Shu, George P Tiley, Noe Fernandez Pozo, Adam L Healey, Kerrie W Barry, Cindy Chen, Mei Wang, Anna Lipzen, Christopher Daum, Christopher A Saski, Jordan C McBreen, Roth E Conrad, Leslie M Kollar, Sanna Olsson, Sanna Huttunen, Jacob B Landis, J Gordon Burleigh, Norman J Wickett, Matthew G Johnson, Stefan Andreas Rensing, Jerry W Jenkins, Jeremy Schmutz, Stuart F McDaniel
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. Science advances 7 (27) (2021)
Lori B Huberman, Vincent W Wu, David J Kowbel, Juna Lee, Christopher Daum, Igor V Grigoriev, Ronan C O'Malley, N Louise Glass
DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus. Proceedings of the National Academy of Sciences of the United States of America 118 (13) (2021)