Eduardo P C Rocha (Eduardo Pc Rocha)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 62

Top Venues

Nature communications

Nucleic acids research

Proceedings of the National Academy of Sciences of the United States of America

PLoS genetics

Université Versailles Saint-Quentin-en-Yvelines (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Université Versailles Saint-Quentin-en-Yvelines Jan 02 1997

France

PHD

Publications

Kristen D Curry, Feiqiao Brian Yu, Summer E Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P C Rocha, Todd J Treangen
Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs. bioRxiv : the preprint server for biology (2024)
Thibault R Bongiovanni, Casey J Latario, Youn Le Cras, Evan Trus, Sophie Robitaille, Kerry Swartz, Danica Schmidtke, Maxence Vincent, Artemis Kosta, Jan Orth, Florian Stengel, Riccardo Pellarin, Eduardo P C Rocha, Benjamin D Ross, Eric Durand
Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota. Nature communications 15 (1) (2024)
Thibault R Bongiovanni, Casey J Latario, Youn Le Cras, Evan Trus, Sophie Robitaille, Kerry Swartz, Danica Schmidtke, Maxence Vincent, Artemis Kosta, Jan Orth, Florian Stengel, Riccardo Pellarin, Eduardo P C Rocha, Benjamin D Ross, Eric Durand
Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota. Nature communications 15 (1) (2024)
Eugen Pfeifer, Eduardo P C Rocha
Phage-plasmids promote recombination and emergence of phages and plasmids. Nature communications 15 (1) (2024)
Thibault R Bongiovanni, Casey J Latario, Youn Le Cras, Evan Trus, Sophie Robitaille, Kerry Swartz, Danica Schmidtke, Maxence Vincent, Artemis Kosta, Jan Orth, Florian Stengel, Riccardo Pellarin, Eduardo P C Rocha, Benjamin D Ross, Eric Durand
Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota. Nature communications 15 (1) (2024)
Egill Richard, Baptiste Darracq, Eloi Littner, Gael A Millot, Valentin Conte, Thomas Cokelaer, Jan Engelstädter, Eduardo P C Rocha, Didier Mazel, Céline Loot
Belt and braces: Two escape ways to maintain the cassette reservoir of large chromosomal integrons. PLoS genetics 20 (4) (2024)
Rémi Tuffet, Gabriel Carvalho, Anne-Sophie Godeux, Fanny Mazzamurro, Eduardo P C Rocha, Maria-Halima Laaberki, Samuel Venner, Xavier Charpentier
Manipulation of natural transformation by AbaR-type islands promotes fixation of antibiotic resistance in Acinetobacter baumannii . Proceedings of the National Academy of Sciences of the United States of America 121 (39) (2024)
Thibault R Bongiovanni, Casey J Latario, Youn Le Cras, Evan Trus, Sophie Robitaille, Kerry Swartz, Danica Schmidtke, Maxence Vincent, Artemis Kosta, Jan Orth, Florian Stengel, Riccardo Pellarin, Eduardo P C Rocha, Benjamin D Ross, Eric Durand
Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota. Nature communications 15 (1) (2024)
Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Remy A Bonnin, Pilar Domingo-Calap, Eduardo P C Rocha, Olaya Rendueles
Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency. Nature communications 15 (1) (2024)
Egill Richard, Baptiste Darracq, Eloi Littner, Gael A Millot, Valentin Conte, Thomas Cokelaer, Jan Engelstädter, Eduardo P C Rocha, Didier Mazel, Céline Loot
Belt and braces: Two escape ways to maintain the cassette reservoir of large chromosomal integrons. PLoS genetics 20 (4) (2024)
Egill Richard, Baptiste Darracq, Eloi Littner, Claire Vit, Clémence Whiteway, Julia Bos, Florian Fournes, Geneviève Garriss, Valentin Conte, Delphine Lapaillerie, Vincent Parissi, François Rousset, Ole Skovgaard, David Bikard, Eduardo P C Rocha, Didier Mazel, Céline Loot
Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems. Science advances 10 (2) (2024)
Eugen Pfeifer, Eduardo P C Rocha
Phage-plasmids promote recombination and emergence of phages and plasmids. Nature communications 15 (1) (2024)
Kristen D Curry, Feiqiao Brian Yu, Summer E Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P C Rocha, Todd J Treangen
Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs. bioRxiv : the preprint server for biology (2024)
Lingchen He, Laura Miguel-Romero, Jonasz B Patkowski, Nasser Alqurainy, Eduardo P C Rocha, Tiago R D Costa, Alfred Fillol-Salom, José R Penadés
Tail assembly interference is a common strategy in bacterial antiviral defenses. Nature communications 15 (1) (2024)
Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Remy A Bonnin, Pilar Domingo-Calap, Eduardo P C Rocha, Olaya Rendueles
Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency. Nature communications 15 (1) (2024)
Egill Richard, Baptiste Darracq, Eloi Littner, Claire Vit, Clémence Whiteway, Julia Bos, Florian Fournes, Geneviève Garriss, Valentin Conte, Delphine Lapaillerie, Vincent Parissi, François Rousset, Ole Skovgaard, David Bikard, Eduardo P C Rocha, Didier Mazel, Céline Loot
Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems. Science advances 10 (2) (2024)
Eugen Pfeifer, Eduardo P C Rocha
Phage-plasmids promote recombination and emergence of phages and plasmids. Nature communications 15 (1) (2024)
Eugen Pfeifer, Eduardo P C Rocha
Phage-plasmids promote recombination and emergence of phages and plasmids. Nature communications 15 (1) (2024)
Thibault R Bongiovanni, Casey J Latario, Youn Le Cras, Evan Trus, Sophie Robitaille, Kerry Swartz, Danica Schmidtke, Maxence Vincent, Artemis Kosta, Jan Orth, Florian Stengel, Riccardo Pellarin, Eduardo P C Rocha, Benjamin D Ross, Eric Durand
Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota. Nature communications 15 (1) (2024)
Manuel Ares-Arroyo, Charles Coluzzi, Jorge A Moura de Sousa, Eduardo P C Rocha
Hijackers, hitchhikers, or co-drivers? The mysteries of mobilizable genetic elements. PLoS biology 22 (8) (2024)
Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Remy A Bonnin, Pilar Domingo-Calap, Eduardo P C Rocha, Olaya Rendueles
Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency. Nature communications 15 (1) (2024)
Kristen D Curry, Feiqiao Brian Yu, Summer E Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P C Rocha, Todd J Treangen
Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs. bioRxiv : the preprint server for biology (2024)
Liam P Shaw, Eduardo P C Rocha, Pauline Hall Barrientos
Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria. Nucleic acids research (2023)
Jorge André Moura de Sousa, Alfred Fillol-Salom, José R Penadés, Eduardo P C Rocha
Identification and characterization of thousands of bacteriophage satellites across bacteria. Nucleic acids research (2023)
Francesca D'Angelo, Eduardo P C Rocha, Olaya Rendueles
The Capsule Increases Susceptibility to Last-Resort Polymyxins, but Not to Other Antibiotics, in Klebsiella pneumoniae. Antimicrobial agents and chemotherapy (2023)
Aida Alonso-Del Valle, Laura Toribio-Celestino, Anna Quirant, Carles Tardio Pi, Javier DelaFuente, Rafael Cantón, Eduardo P C Rocha, Carles Ubeda, Rafael Peña-Miller, Alvaro San Millan
Antimicrobial resistance level and conjugation permissiveness shape plasmid distribution in clinical enterobacteria. Proceedings of the National Academy of Sciences of the United States of America 120 (51) (2023)
Amandine Nucci, Juliette Janaszkiewicz, Eduardo P C Rocha, Olaya Rendueles
Emergence of novel non-aggregative variants under negative frequency-dependent selection in Klebsiella variicola . microLife 4 (2023)
Antonio Pedro Camargo, Lee Call, Simon Roux, Stephen Nayfach, Marcel Huntemann, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Supratim Mukherjee, T B K Reddy, I-Min A Chen, Natalia N Ivanova, Emiley A Eloe-Fadrosh, Tanja Woyke, David A Baltrus, Salvador Castañeda-Barba, María de Toro, Barbara E Funnell, James P J Hall, Aindrila Mukhopadhyay, Eduardo P C Rocha, Thibault Stalder, Eva M Top, Nikos C Kyrpides
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids research (2023)
Charles Coluzzi, Martin Guillemet, Fanny Mazzamurro, Marie Touchon, Maxime Godfroid, Guillaume Achaz, Philippe Glaser, Eduardo P C Rocha
Chance favors the prepared genomes: horizontal transfer shapes the emergence of antibiotic resistance mutations in core genes. Molecular biology and evolution (2023)
Manuel Ares-Arroyo, Charles Coluzzi, Eduardo P C Rocha
Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation. Nucleic acids research (2022)
Damien Piel, Maxime Bruto, Yannick Labreuche, François Blanquart, David Goudenège, Rubén Barcia-Cruz, Sabine Chenivesse, Sophie Le Panse, Adèle James, Javier Dubert, Bruno Petton, Erica Lieberman, K Mathias Wegner, Fatima A Hussain, Kathryn M Kauffman, Martin F Polz, David Bikard, Sylvain Gandon, Eduardo P C Rocha, Frédérique Le Roux
Phage-host coevolution in natural populations. Nature microbiology 7 (7) (2022)
Bertrand Néron, Eloi Littner, Matthieu Haudiquet, Amandine Perrin, Jean Cury, Eduardo P C Rocha
IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella. Microorganisms 10 (4) (2022)
Amandine Nucci, Eduardo P C Rocha, Olaya Rendueles
Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits. Nature communications 13 (1) (2022)
Eugen Pfeifer, Remy A Bonnin, Eduardo P C Rocha
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion. mBio 13 (5) (2022)
Charles Coluzzi, Maria Pilar Garcillán-Barcia, Fernando de la Cruz, Eduardo P C Rocha
Evolution of Plasmid Mobility: Origin and Fate of Conjugative and Nonconjugative Plasmids. Molecular biology and evolution 39 (6) (2022)
Eduardo P C Rocha, David Bikard
Microbial defenses against mobile genetic elements and viruses: Who defends whom from what? PLoS biology 20 (1) (2022)
Alonso Felipe-Ruiz, Alberto Marina, Eduardo P C Rocha
Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling. mBio (2022)
Matthieu Haudiquet, Jorge André Moura de Sousa, Marie Touchon, Eduardo P C Rocha
Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1861) (2022)
Nicolas Flaugnatti, Sandrine Isaac, Leonardo F Lemos Rocha, Sandrine Stutzmann, Olaya Rendueles, Candice Stoudmann, Nina Vesel, Marc García-Garcerá, Amandine Buffet, Thibault G Sana, Eduardo P C Rocha, Melanie Blokesch
Human commensal gut Proteobacteria withstand type VI secretion attacks through immunity protein-independent mechanisms. Nature communications 12 (1) (2021)
François Rousset, Jose Cabezas-Caballero, Florence Piastra-Facon, Jesús Fernández-Rodríguez, Olivier Clermont, Erick Denamur, Eduardo P C Rocha, David Bikard
The impact of genetic diversity on gene essentiality within the Escherichia coli species. Nature microbiology 6 (3) (2021)
Jorge A Moura de Sousa, Eugen Pfeifer, Marie Touchon, Eduardo P C Rocha
Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa. Molecular biology and evolution 38 (6) (2021)
Manuel Ares-Arroyo, Eduardo P C Rocha, Bruno Gonzalez Zorn
Evolution of ColE1-like plasmids across γ-Proteobacteria: From bacteriocin production to antimicrobial resistance. PLoS genetics 17 (11) (2021)
Jorge André Moura de Sousa, Eduardo P C Rocha
To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1842) (2021)
Matthieu Haudiquet, Amandine Buffet, Olaya Rendueles, Eduardo P C Rocha
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae. PLoS biology 19 (7) (2021)
Amandine Perrin, Eduardo P C Rocha
PanACoTA: a modular tool for massive microbial comparative genomics. NAR genomics and bioinformatics 3 (1) (2021)
Santiago Redondo-Salvo, Raúl Fernández-López, Raul Ruiz, Luis Vielva, María de Toro, Eduardo P C Rocha, M Pilar Garcillan-Barcia, Fernando de la Cruz
Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids. Nature communications 11 (1) (2020)
Jorge A M de Sousa, Amandine Buffet, Matthieu Haudiquet, Eduardo P C Rocha, Olaya Rendueles
Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation. The ISME journal 14 (12) (2020)
Marc García-Garcerá, Eduardo P C Rocha
Community diversity and habitat structure shape the repertoire of extracellular proteins in bacteria. Nature communications 11 (1) (2020)
Devon Sheppard, Jamie-Lee Berry, Rémi Denise, Eduardo P C Rocha, Steve Matthews, Vladimir Pelicic
The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold. The Journal of biological chemistry 295 (19) (2020)
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Mathieu Dubois, Amandine Perrin, Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Catherine Matias, Christophe Ambroise, Eduardo P C Rocha, David Vallenet
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph. PLoS computational biology 16 (3) (2020)
Marie Touchon, Amandine Perrin, Jorge André Moura de Sousa, Belinda Vangchhia, Samantha Burn, Claire L O'Brien, Erick Denamur, David M Gordon, Eduardo P C Rocha
Phylogenetic background and habitat drive the genetic diversification of Escherichia coli. PLoS genetics 16 (6) (2020)
Tess E Brewer, Mads Albertsen, Arwyn Edwards, Rasmus Hansen Kirkegaard, Eduardo P C Rocha, Noah Fierer
Unlinked rRNA genes are widespread among bacteria and archaea. The ISME journal 14 (2) (2019)
Camille d'Humières, Marie Touchon, Sara Dion, Jean Cury, Amine Ghozlane, Marc Garcia-Garcera, Christiane Bouchier, Laurence Ma, Erick Denamur, Eduardo P C Rocha
A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach. Scientific reports 9 (1) (2019)
Rémi Denise, Sophie Saphia Abby, Eduardo P C Rocha
Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility. PLoS biology 17 (7) (2019)
Phelim Bradley, Henk C den Bakker, Eduardo P C Rocha, Gilean McVean, Zamin Iqbal
Ultrafast search of all deposited bacterial and viral genomic data. Nature biotechnology 37 (2) (2019)
Jorge A Moura de Sousa, Eduardo P C Rocha
Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation. Scientific reports 9 (1) (2019)
Alfred Fillol-Salom, Ahlam Alsaadi, Jorge André Moura de Sousa, Li Zhong, Kevin R Foster, Eduardo P C Rocha, José R Penadés, Hanne Ingmer, Jakob Haaber
Bacteriophages benefit from generalized transduction. PLoS pathogens 15 (7) (2019)
Mélodie Duval, Daniel Dar, Filipe Carvalho, Eduardo P C Rocha, Rotem Sorek, Pascale Cossart
HflXr, a homolog of a ribosome-splitting factor, mediates antibiotic resistance. Proceedings of the National Academy of Sciences of the United States of America 115 (52) (2018)
Camille Clerissi, Marie Touchon, Delphine Capela, Mingxing Tang, Stéphane Cruveiller, Clémence Genthon, Céline Lopez-Roques, Matthew A Parker, Lionel Moulin, Catherine Masson-Boivin, Eduardo P C Rocha
Author Correction: Parallels between experimental and natural evolution of legume symbionts. Nature communications 9 (1) (2018)
Camille Clerissi, Marie Touchon, Delphine Capela, Mingxing Tang, Stéphane Cruveiller, Clémence Genthon, Céline Lopez-Roques, Matthew A Parker, Lionel Moulin, Catherine Masson-Boivin, Eduardo P C Rocha
Parallels between experimental and natural evolution of legume symbionts. Nature communications 9 (1) (2018)
Marc García-Garcerá, Marie Touchon, Sylvain Brisse, Eduardo P C Rocha
Metagenomic assessment of the interplay between the environment and the genetic diversification of Acinetobacter. Environmental microbiology 19 (12) (2017)
Pedro H Oliveira, Marie Touchon, Eduardo P C Rocha
Regulation of genetic flux between bacteria by restriction-modification systems. Proceedings of the National Academy of Sciences of the United States of America 113 (20) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Eduardo P C Rocha (Eduardo Pc Rocha)