Juergen Cox (Jürgen Cox, J Cox)

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 25

Top Topics

Ultra High Performance Liquid Chromatography

Top Venues

Nature biotechnology

Journal of proteome research

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

R Gray Huffman, Andrew Leduc, Christoph Wichmann, Marco Di Gioia, Francesco Borriello, Harrison Specht, Jason Derks, Saad Khan, Luke Khoury, Edward Emmott, Aleksandra A Petelski, David H Perlman, Juergen Cox, Ivan Zanoni, Nikolai Slavov
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics. Nature methods (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Pavel Sinitcyn, Alicia L Richards, Robert J Weatheritt, Dain R Brademan, Harald Marx, Evgenia Shishkova, Jesse G Meyer, Alexander S Hebert, Michael S Westphall, Benjamin J Blencowe, Juergen Cox, Joshua J Coon
Global detection of human variants and isoforms by deep proteome sequencing. Nature biotechnology (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Oliver Kardell, Christine von Toerne, Juliane Merl-Pham, Ann-Christine König, Marcel Blindert, Teresa K Barth, Julia Mergner, Christina Ludwig, Johanna Tüshaus, Stephan Eckert, Stephan A Müller, Stephan Breimann, Pieter Giesbertz, Alexander Maximilian Bernhardt, Lisa Schweizer, Vincent Albrecht, Daniel Teupser, Axel Imhof, Bernhard Kuster, Stefan F Lichtenthaler, Matthias Mann, Juergen Cox, Stefanie M Hauck
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens. Journal of proteome research (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Béla P Frohn, Tobias Härtel, Juergen Cox, Petra Schwille
Tracing back variations in archaeal ESCRT-based cell division to protein domain architectures. PloS one 17 (3) (2022)
Fredrik Trulsson, Vyacheslav Akimov, Mihaela Robu, Nila van Overbeek, David Aureliano Pérez Berrocal, Rashmi G Shah, Juergen Cox, Girish M Shah, Blagoy Blagoev, Alfred C O Vertegaal
Deubiquitinating enzymes and the proteasome regulate preferential sets of ubiquitin substrates. Nature communications 13 (1) (2022)
Şule Yılmaz, Florian Busch, Nagarjuna Nagaraj, Juergen Cox
Accurate and Automated High-Coverage Identification of Chemically Cross-Linked Peptides with MaxLynx. Analytical chemistry 94 (3) (2022)
Juergen Cox
Prediction of peptide mass spectral libraries with machine learning. Nature biotechnology (2022)
Pavel Sinitcyn, Hamid Hamzeiy, Favio Salinas Soto, Daniel Itzhak, Frank McCarthy, Christoph Wichmann, Martin Steger, Uli Ohmayer, Ute Distler, Stephanie Kaspar-Schoenefeld, Nikita Prianichnikov, Şule Yılmaz, Jan Daniel Rudolph, Stefan Tenzer, Yasset Perez Riverol, Nagarjuna Nagaraj, Sean J Humphrey, Juergen Cox
MaxDIA enables library-based and library-free data-independent acquisition proteomics. Nature biotechnology (2021)
Franziska R Traube, Dilara Özdemir, Hanife Sahin, Constanze Scheel, Andrea F Glück, Anna S Geserich, Sabine Oganesian, Sarantos Kostidis, Katharina Iwan, René Rahimoff, Grazia Giorgio, Markus Müller, Fabio Spada, Martin Biel, Juergen Cox, Martin A Giera, Stylianos Michalakis, Thomas Carell
Redirected nuclear glutamate dehydrogenase supplies Tet3 with α-ketoglutarate in neurons. Nature communications 12 (1) (2021)
Frido Welker, Jazmín Ramos-Madrigal, Petra Gutenbrunner, Meaghan Mackie, Shivani Tiwary, Rosa Rakownikow Jersie-Christensen, Cristina Chiva, Marc R Dickinson, Martin Kuhlwilm, Marc de Manuel, Pere Gelabert, María Martinón-Torres, Ann Margvelashvili, Juan Luis Arsuaga, Eudald Carbonell, Tomas Marques-Bonet, Kirsty Penkman, Eduard Sabidó, Juergen Cox, Jesper Velgaard Olsen, David Lordkipanidze, Fernando Racimo, Carles Lalueza-Fox, José María Bermúdez de Castro, Eske Willerslev, Enrico Cappellini
The dental proteome of Homo antecessor. Nature 580 (7802) (2020)
Sung-Huan Yu, Pelagia Kyriakidou, Juergen Cox
Isobaric Matching between Runs and Novel PSM-Level Normalization in MaxQuant Strongly Improve Reporter Ion-Based Quantification. Journal of proteome research 19 (10) (2020)
Franziska Brüning, Sara B Noya, Tanja Bange, Stella Koutsouli, Jan Daniel Rudolph, Shiva K Tyagarajan, Juergen Cox, Matthias Mann, Steven A Brown, Maria S Robles
Sleep-wake cycles drive daily dynamics of synaptic phosphorylation. Science (New York, N.Y.) 366 (6462) (2020)
Jan Daniel Rudolph, Juergen Cox
A Network Module for the Perseus Software for Computational Proteomics Facilitates Proteome Interaction Graph Analysis. Journal of proteome research 18 (5) (2019)
Pavel Sinitcyn, Shivani Tiwary, Jan Rudolph, Petra Gutenbrunner, Christoph Wichmann, Şule Yılmaz, Hamid Hamzeiy, Favio Salinas, Juergen Cox
MaxQuant goes Linux. Nature methods 15 (6) (2019)
Frédéric Frottin, Florian Schueder, S Tiwary, R Gupta, R Körner, T Schlichthaerle, Juergen Cox, Ralf Jungmann, F Ulrich Hartl, Mark S Hipp
The nucleolus functions as a phase-separated protein quality control compartment. Science (New York, N.Y.) 365 (6451) (2019)
Claudio Iacobucci, Christine Piotrowski, Ruedi Aebersold, Bruno C Amaral, Philip Andrews, Katja Bernfur, Christoph H Borchers, Nicolas I Brodie, James E Bruce, Yong Cao, Stéphane Chaignepain, Juan D Chavez, Stéphane Claverol, Juergen Cox, Trisha Davis, Gianluca Degliesposti, Meng-Qiu Dong, Nufar Edinger, Cecilia Emanuelsson, Marina Gay, Michael Götze, Francisco Gomes-Neto, Fabio César Gozzo, Craig Gutierrez, Caroline Haupt, Albert J R Heck, Franz Herzog, Lan Huang, Michael R Hoopmann, Nir Kalisman, Oleg Klykov, Zdeněk Kukačka, Fan Liu, Michael J MacCoss, Karl Mechtler, Ravit Mesika, Robert L Moritz, Nagarjuna Nagaraj, Victor Nesati, Ana G C Neves-Ferreira, Robert Ninnis, Petr Novák, Francis J O'Reilly, Matthias Pelzing, Evgeniy Petrotchenko, Lolita Piersimoni, Manolo Plasencia, Tara Louise Pukala, Kasper Dyrberg Rand, Juri Rappsilber, Dana Reichmann, Carolin Sailer, Chris P Sarnowski, Richard A Scheltema, Carla Schmidt, David C Schriemer, Yi Shi, J Mark Skehel, Moriya Slavin, Frank Sobott, Victor Solis-Mezarino, Heike Stephanowitz, Florian Stengel, Christian E Stieger, Esben Trabjerg, Michael Trnka, Marta Vilaseca, Rosa Viner, Yufei Xiang, Sule Yilmaz, Alex Zelter, Daniel Ziemianowicz, Alexander Leitner, Andrea Sinz
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. Analytical chemistry 91 (11) (2019)
Christoph Wichmann, Florian Meier, Sebastian Virreira Winter, Andreas-David Brunner, Juergen Cox, Matthias Mann
MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides. Molecular & cellular proteomics : MCP 18 (5) (2019)
Shivani Tiwary, Roie Levy, Petra Gutenbrunner, Favio Salinas Soto, Krishnan K Palaniappan, Laura Deming, Marc Berndl, Arthur Brant, Peter Cimermancic, Juergen Cox
High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis. Nature methods 16 (6) (2019)
Sebastian Virreira Winter, Florian Meier, Christoph Wichmann, Juergen Cox, Matthias Mann, Rüdiger Klein
EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification. Nature methods 15 (7) (2018)