Sabeeha S Merchant (Sabeeha Merchant)

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 47

Top Topics

Amyotrophic Lateral Sclerosis

Gene Expression

Arabidopsis Thaliana

Top Venues

bioRxiv : the preprint server for biology

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Tim L Jeffers, Samuel Owen Purvine, Carrie D Nicora, Ryan McCombs, Shivani Upadhyaya, Adrien Stroumza, Ken Whang, Sean D Gallaher, Alice C Dohnalkova, Sabeeha S Merchant, Mary S Lipton, Krishna K Niyogi, Melissa S Roth
Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis. Nature communications 15 (1) (2024)
Marco A Duenas, Rory J Craig, Sean D Gallaher, Jeffrey L Moseley, Sabeeha S Merchant
Leaky ribosomal scanning enables tunable translation of bicistronic ORFs in green algae. bioRxiv : the preprint server for biology (2024)
Marco A Duenas, Rory J Craig, Sean D Gallaher, Jeffrey L Moseley, Sabeeha S Merchant
Leaky ribosomal scanning enables tunable translation of bicistronic ORFs in green algae. bioRxiv : the preprint server for biology (2024)
Sunnyjoy Dupuis, Usha F Lingappa, Xavier Mayali, Eve S Sindermann, Jordan L Chastain, Peter K Weber, Rhona K Stuart, Sabeeha S Merchant
Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction. bioRxiv : the preprint server for biology (2024)
Sunnyjoy Dupuis, Usha F Lingappa, Xavier Mayali, Eve S Sindermann, Jordan L Chastain, Peter K Weber, Rhona K Stuart, Sabeeha S Merchant
Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction. bioRxiv : the preprint server for biology (2024)
Sunnyjoy Dupuis, Usha F Lingappa, Xavier Mayali, Eve S Sindermann, Jordan L Chastain, Peter K Weber, Rhona K Stuart, Sabeeha S Merchant
Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction. bioRxiv : the preprint server for biology (2024)
Tim L Jeffers, Samuel Owen Purvine, Carrie D Nicora, Ryan McCombs, Shivani Upadhyaya, Adrien Stroumza, Ken Whang, Sean D Gallaher, Alice C Dohnalkova, Sabeeha S Merchant, Mary S Lipton, Krishna K Niyogi, Melissa S Roth
Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis. Nature communications 15 (1) (2024)
Xiaoqing Sun, Matthew LaVoie, Paul A Lefebvre, Sean D Gallaher, Anne G Glaesener, Daniela Strenkert, Radhika Mehta, Sabeeha S Merchant, Carolyn D Silflow
Mutation of negative regulatory gene CEHC1 encoding an FBXO3 protein results in normoxic expression of HYDA genes in Chlamydomonas reinhardtii . bioRxiv : the preprint server for biology (2024)
Tim L Jeffers, Samuel Owen Purvine, Carrie D Nicora, Ryan McCombs, Shivani Upadhyaya, Adrien Stroumza, Ken Whang, Sean D Gallaher, Alice C Dohnalkova, Sabeeha S Merchant, Mary S Lipton, Krishna K Niyogi, Melissa S Roth
Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis. Nature communications 15 (1) (2024)
Sunnyjoy Dupuis, Usha F Lingappa, Xavier Mayali, Eve S Sindermann, Jordan L Chastain, Peter K Weber, Rhona K Stuart, Sabeeha S Merchant
Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction. bioRxiv : the preprint server for biology (2024)
Sunnyjoy Dupuis, Usha F Lingappa, Xavier Mayali, Eve S Sindermann, Jordan L Chastain, Peter K Weber, Rhona K Stuart, Sabeeha S Merchant
Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction. bioRxiv : the preprint server for biology (2024)
Sunnyjoy Dupuis, Usha F Lingappa, Xavier Mayali, Eve S Sindermann, Jordan L Chastain, Peter K Weber, Rhona K Stuart, Sabeeha S Merchant
Scarcity of fixed carbon transfer in a model microbial phototroph-heterotroph interaction. bioRxiv : the preprint server for biology (2024)
Nancy A Eckardt, Ralph Bock, Roberta Croce, John Clark Lagarias, Sabeeha S Merchant, Kevin E Redding
Focus on Photosynthesis. The Plant cell (2024)
Avinash Sreedasyam, Christopher Plott, Md Shakhawat Hossain, John T Lovell, Jerry W Jenkins, Jerry W Jenkins, Christopher Daum, Kerrie Barry, Joseph Carlson, Shengqiang Shu, Jeremy Phillips, Mojgan Amirebrahimi, Matthew Zane, Mei Wang, David Goodstein, Fabian B Haas, Manuel Hiss, Pierre-François Perroud, Sara S Jawdy, Yongil Yang, Rongbin Hu, Jenifer Johnson, Janette Kropat, Sean D Gallaher, Anna Lipzen, Eugene V Shakirov, Xiaoyu Weng, Ivone Torres-Jerez, Brock Weers, Daniel Conde, Marilia R Pappas, Lifeng Liu, Andrew Muchlinski, Hui Jiang, Christine Shyu, Pu Huang, Jose Sebastian, Carol Laiben, Alyssa Medlin, Sankalpi Carey, Alyssa A Carrell, Jin-Gui Chen, Mariano Perales, Kankshita Swaminathan, Isabel Allona, Dario Grattapaglia, Elizabeth A Cooper, Dorothea Tholl, John P Vogel, David J Weston, Xiaohan Yang, Thomas P Brutnell, Elizabeth A Kellogg, Ivan R Baxter, Michael Udvardi, Yuhong Tang, Todd C Mockler, Thomas E Juenger, John E Mullet, Stefan Andreas Rensing, Gerald A Tuskan, Sabeeha S Merchant, Gary Stacey, Jeremy Schmutz
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic acids research (2023)
Daniela Strenkert, Stefan Schmollinger, Srinand Paruthiyil, Bonnie C Brown, Sydnee Green, Catherine M Shafer, Patrice A Salomé, Hosea Nelson, Crysten E Blaby-Haas, Jeffrey L Moseley, Sabeeha S Merchant
Distinct function of Chlamydomonas CTRA-CTR transporters in Cu assimilation and intracellular mobilization. bioRxiv : the preprint server for biology (2023)
Daniela Strenkert, Stefan Schmollinger, Yuntao Hu, Christian Hofmann, Kristen Holbrook, Helen W Liu, Samuel O Purvine, Carrie D Nicora, Si Chen, Mary S Lipton, Trent R Northen, Stephan Clemens, Sabeeha S Merchant
Cysteine: an ancestral Cu binding ligand in green algae? bioRxiv : the preprint server for biology (2023)
Lital Davidi, Sean D Gallaher, Eyal Ben-David, Samuel Owen Purvine, Thomas L Fillmore, Carrie D Nicora, Rory J Craig, Stefan Schmollinger, Sanja Roje, Crysten E Blaby-Haas, Robert P Auber, Jennifer H Wisecaver, Sabeeha S Merchant
Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management. Proceedings of the National Academy of Sciences of the United States of America 120 (30) (2023)
Sunnyjoy Dupuis, Sabeeha S Merchant
Chlamydomonas reinhardtii: a model for photosynthesis and so much more. Nature methods 20 (10) (2023)
Huan Long, Jinhua Fang, Lian Ye, Baolong Zhang, Colleen Hui, Xuan Deng, Sabeeha S Merchant, Kai-Yao Huang
Structural and functional regulation of Chlamydomonas lysosome-related organelles during environmental changes. Plant physiology (2023)
Rory J Craig, Sean D Gallaher, Shengqiang Shu, Patrice A Salomé, Jerry W Jenkins, Crysten E Blaby-Haas, Samuel Owen Purvine, Samuel O'Donnell, Kerrie W Barry, Jerry W Jenkins, Daniela Strenkert, Janette Kropat, Christopher Daum, Yuko Yoshinaga, David M Goodstein, Olivier Vallon, Jeremy Schmutz, Sabeeha S Merchant
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory. The Plant cell 35 (2) (2023)
Colleen Hui, Stefan Schmollinger, Daniela Strenkert, Kristen Holbrook, Hayden R Montgomery, Si Chen, Hosea M Nelson, Peter K Weber, Sabeeha S Merchant
Simple steps to enable reproducibility: culture conditions affecting Chlamydomonas growth and elemental composition. The Plant journal : for cell and molecular biology 111 (4) (2022)
Rory J Craig, Sean D Gallaher, Shengqiang Shu, Patrice Salomé, Jerry W Jenkins, Crysten E Blaby-Haas, Samuel O Purvine, Samuel O'Donnell, Kerrie Barry, Jane Grimwood, Daniela Strenkert, Janette Kropat, Chris Daum, Yuko Yoshinaga, David M Goodstein, Olivier Vallon, Jeremy Schmutz, Sabeeha S Merchant
The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory. The Plant cell (2022)
Keegan L J Pham, Stefan Schmollinger, Sabeeha S Merchant, Daniela Strenkert
Chlamydomonas ATX1 is essential for Cu distribution to multiple cupro-enzymes and maintenance of biomass in conditions demanding cupro-enzyme-dependent metabolic pathways. Plant direct 6 (2) (2022)
Daniela Strenkert, Asli Yildirim, Juying Yan, Yuko Yoshinaga, Matteo Pellegrini, Ronan C O'Malley, Sabeeha S Merchant, James G Umen
The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle. The Plant journal : for cell and molecular biology 112 (2) (2022)
Daniela Strenkert, Matthew Mingay, Stefan Schmollinger, Cindy Chen, Ronan C O'Malley, Sabeeha S Merchant
An optimized ChIP-Seq framework for profiling histone modifications in Chromochloris zofingiensis . Plant direct 6 (3) (2022)
Rory J Craig, Sean D Gallaher, Shengqiang Shu, Patrice Salomé, Jerry W Jenkins, Crysten E Blaby-Haas, Samuel O Purvine, Samuel O'Donnell, Kerrie Barry, Jane Grimwood, Daniela Strenkert, Janette Kropat, Chris Daum, Yuko Yoshinaga, David M Goodstein, Olivier Vallon, Jeremy Schmutz, Sabeeha S Merchant
The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory. The Plant cell (2022)
Patrice A Salomé, Sabeeha S Merchant
Co-expression networks in Chlamydomonas reveal significant rhythmicity in batch cultures and empower gene function discovery. The Plant cell 33 (4) (2021)
Juliane Neupert, Sean D Gallaher, Yinghong Lu, Daniela Strenkert, Na'ama Segal, Rouhollah Barahimipour, Sorel T Fitz-Gibbon, Michael Schroda, Sabeeha S Merchant, Ralph Bock
Publisher Correction: An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonasis. Nature communications 12 (1) (2021)
Oscar A Campos, Narsis Attar, Chen Cheng, Maria Vogelauer, Nathan V Mallipeddi, Stefan Schmollinger, Nedas Matulionis, Heather R Christofk, Sabeeha S Merchant, Siavash K Kurdistani
A pathogenic role for histone H3 copper reductase activity in a yeast model of Friedreich's ataxia. Science advances 7 (51) (2021)
Stefan Schmollinger, Si Chen, Daniela Strenkert, Colleen Hui, Martina Ralle, Sabeeha S Merchant
Single-cell visualization and quantification of trace metals in Chlamydomonas lysosome-related organelles. Proceedings of the National Academy of Sciences of the United States of America 118 (16) (2021)
Sean D Gallaher, Rory J Craig, Iniyan Ganesan, Samuel Owen Purvine, Sean R McCorkle, Jerry W Jenkins, Daniela Strenkert, Lital Davidi, Melissa S Roth, Tim L Jeffers, Mary S Lipton, Krishna K Niyogi, Jeremy Schmutz, Steven M Theg, Crysten E Blaby-Haas, Sabeeha S Merchant
Widespread polycistronic gene expression in green algae. Proceedings of the National Academy of Sciences of the United States of America 118 (7) (2021)
Feiyang Ma, Patrice A Salomé, Sabeeha S Merchant, Matteo Pellegrini
Single-cell RNA sequencing of batch Chlamydomonas cultures reveals heterogeneity in their diurnal cycle phase. The Plant cell 33 (4) (2021)
Narsis Attar, Oscar A Campos, Maria Vogelauer, Chen Cheng, Yong Xue, Stefan Schmollinger, Lukasz Salwinski, Nathan V Mallipeddi, Brandon A Boone, Linda Yen, Sichen Yang, Shannon Zikovich, Jade Dardine, Michael F Carey, Sabeeha S Merchant, Siavash K Kurdistani
The histone H3-H4 tetramer is a copper reductase enzyme. Science (New York, N.Y.) 369 (6499) (2020)
Juliane Neupert, Sean D Gallaher, Yinghong Lu, Daniela Strenkert, Na'ama Segal, Rouhollah Barahimipour, Sorel T Fitz-Gibbon, Michael Schroda, Sabeeha S Merchant, Ralph Bock
An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonas. Nature communications 11 (1) (2020)
Patrice A Salomé, Sabeeha S Merchant
A Series of Fortunate Events: Introducing Chlamydomonas as a Reference Organism. The Plant cell 31 (8) (2019)
Sabeeha S Merchant, Nancy A Eckardt, Nancy Winchester
The Plant Cell Celebrates 30 Years of Publishing the Best Work in Plant Biology . The Plant cell 31 (1) (2019)
Melissa S Roth, Sean D Gallaher, Daniel J Westcott, Masakazu Iwai, Katherine B Louie, Maria Mueller, Andreas Walter, Fatima Foflonker, Benjamin P Bowen, Nassim N Ataii, Junha Song, Jian-Hua Chen, Crysten E Blaby-Haas, Carolyn A Larabell, Manfred Auer, Trent R Northen, Sabeeha S Merchant, Krishna K Niyogi
Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. The Plant cell 31 (3) (2019)
Shyamal Mosalaganti, Jan Kosinski, Sahradha Albert, Miroslava Schaffer, Daniela Strenkert, Patrice A Salomé, Sabeeha S Merchant, Jürgen M Plitzko, Wolfgang Baumeister, Benjamin D Engel, Martin Beck
In situ architecture of the algal nuclear pore complex. Nature communications 9 (1) (2018)
Nancy A Eckardt, Mary Williams, Sabeeha S Merchant
The Plant Cell Welcomes Assistant Features Editors. The Plant cell 30 (1) (2018)
Sean D Gallaher, Sorel T Fitz-Gibbon, Daniela Strenkert, Samuel Owen Purvine, Matteo Pellegrini, Sabeeha S Merchant
High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates. The Plant journal : for cell and molecular biology 93 (3) (2018)
Tyler M Wittkopp, Stefan Schmollinger, Shai I Saroussi, Wei Hu, Weiqing Zhang, Qiuling Fan, Sean D Gallaher, Michael T Leonard, Eric Soubeyrand, Gilles J Basset, Sabeeha S Merchant, Arthur R Grossman, Deqiang Duanmu, John Clark Lagarias
Bilin-Dependent Photoacclimation in Chlamydomonas reinhardtii. The Plant cell 29 (11) (2017)
Nancy A Eckardt, Sabeeha S Merchant
Journal Impact: Brave New World. The Plant cell 29 (9) (2017)
Sabeeha S Merchant, Nancy A Eckardt
The Plant Cell Begins Opt-in Publishing of Peer Review Reports. The Plant cell 28 (10) (2016)
Sean D Gallaher, Sorel T Fitz-Gibbon, Anne G Glaesener, Matteo Pellegrini, Sabeeha S Merchant
Chlamydomonas Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation, Identifies True Strain Histories, and Enables Strain-Specific Studies. The Plant cell 27 (9) (2015)
Sabeeha S Merchant
The plant cell in the new age of scientific publishing. The Plant cell 27 (2) (2015)
David Lopez, Takashi Hamaji, Janette Kropat, Peter DeHoff, Marco Morselli, Liudmilla Rubbi, Sorel T Fitz-Gibbon, Sean D Gallaher, Sabeeha S Merchant, James G Umen, Matteo Pellegrini
Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle. Plant physiology 169 (4) (2015)
James Matt Zones, Ian K Blaby, Sabeeha S Merchant, James G Umen
High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation. The Plant cell 27 (10) (2015)
Rikard Fristedt, Andrei Herdean, Crysten E Blaby-Haas, Fikret Mamedov, Sabeeha S Merchant, Robert L Last, Björn Lundin
PHOTOSYSTEM II PROTEIN33, a protein conserved in the plastid lineage, is associated with the chloroplast thylakoid membrane and provides stability to photosystem II supercomplexes in Arabidopsis. Plant physiology 167 (2) (2014)
Stefan Schmollinger, Timo Mühlhaus, Nanette R Boyle, Ian K Blaby, David Casero, Tabea Mettler, Jeffrey L Moseley, Janette Kropat, Frederik Sommer, Daniela Strenkert, Dorothea Hemme, Matteo Pellegrini, Arthur R Grossman, Mark Stitt, Michael Schroda, Sabeeha S Merchant
Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism. The Plant cell 26 (4) (2014)