Lars Barquist

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 62

Top Venues

Nucleic acids research

Nature microbiology

RNA (New York, N.Y.)

mSystems

University of Würzburg

University of Cambridge (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Würzburg

Germany

Junior Professor :: Faculty of Medicine

Helmholtz Institute for RNA-based Infection Research Jan 01 2018

Germany

Group Leader

University of Würzburg - Dec 31 2017

Germany

Postdoc :: Institute for Molecular Infection Biology

European Bioinformatics Institute

United Kingdom

Visitor

Wellcome Trust Sanger Institute

United Kingdom

Doctoral Student

University of California Berkeley

United States

Specialist :: Bioengineering

National Evolutionary Synthesis Center

United States

Student Developer

Education History

University of Cambridge

United Kingdom

PHD :: Wellcome Trust Sanger Institute

Publications

Yanying Yu, Sandra Gawlitt, Lisa Barros de Andrade E Sousa, Erinc Merdivan, Marie Piraud, Chase L Beisel, Lars Barquist
Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration. Genome biology 25 (1) (2024)
Willow Kion-Crosby, Lars Barquist
Network depth affects inference of gene sets from bacterial transcriptomes using denoising autoencoders. Bioinformatics advances 4 (1) (2024)
Willow Kion-Crosby, Lars Barquist
Network depth affects inference of gene sets from bacterial transcriptomes using denoising autoencoders. Bioinformatics advances 4 (1) (2024)
Laura Jenniches, Charlotte Michaux, Linda Popella, Sarah Reichardt, Jörg Vogel, Alexander J Westermann, Lars Barquist
Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan J Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity. Nature microbiology (2024)
Fatemeh A Ghomi, Jakob J Jung, Gemma C Langridge, Amy K Cain, Christine J Boinett, Moataz Abd El Ghany, Derek J Pickard, Robert A Kingsley, Nicholas R Thomson, Julian Parkhill, Paul P Gardner, Lars Barquist
High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality. mBio (2024)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan J Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity. Nature microbiology 9 (4) (2024)
Yanying Yu, Sandra Gawlitt, Lisa Barros de Andrade E Sousa, Erinc Merdivan, Marie Piraud, Chase L Beisel, Lars Barquist
Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration. Genome biology 25 (1) (2024)
Sandra Gawlitt, Scott P Collins, Yanying Yu, Samuel A Blackman, Lars Barquist, Chase L Beisel
Expanding the flexibility of base editing for high-throughput genetic screens in bacteria. Nucleic acids research 52 (7) (2024)
Sandra Gawlitt, Scott P Collins, Yanying Yu, Samuel A Blackman, Lars Barquist, Chase L Beisel
Expanding the flexibility of base editing for high-throughput genetic screens in bacteria. Nucleic acids research 52 (7) (2024)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan J Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity. Nature microbiology 9 (4) (2024)
Geraldine J Sullivan, Lars Barquist, Amy K Cain
A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria. mSystems 9 (4) (2024)
Willow Kion-Crosby, Lars Barquist
Network depth affects inference of gene sets from bacterial transcriptomes using denoising autoencoders. Bioinformatics advances 4 (1) (2024)
Geraldine J Sullivan, Lars Barquist, Amy K Cain
A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria. mSystems (2024)
Chandradhish Ghosh, Linda Popella, V Dhamodharan, Jakob Jung, Julia Dietzsch, Lars Barquist, Claudia Höbartner, Jörg Vogel
A comparative analysis of peptide-delivered antisense antibiotics using diverse nucleotide mimics. RNA (New York, N.Y.) 30 (6) (2024)
Chandradhish Ghosh, Linda Popella, V Dhamodharan, Jakob Jung, Julia Dietzsch, Lars Barquist, Claudia Höbartner, Jörg Vogel
A side-by-side comparison of peptide-delivered antisense antibiotics employing different nucleotide mimics. RNA (New York, N.Y.) (2024)
Laura Jenniches, Charlotte Michaux, Linda Popella, Sarah Reichardt, Jörg Vogel, Alexander J Westermann, Lars Barquist
Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Elena Vialetto, Solange Miele, Moran G Goren, Jiaqi Yu, Yanying Yu, Daphne Collias, Beatriz Beamud, Lisa Osbelt, Marta Lourenço, Till Strowig, Sylvain Brisse, Lars Barquist, Qimron Udi, David Bikard, Chase L Beisel
Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial activity. Nucleic acids research 52 (10) (2024)
Elena Vialetto, Solange Miele, Moran G Goren, Jiaqi Yu, Yanying Yu, Daphne Collias, Beatriz Beamud, Lisa Osbelt, Marta Lourenço, Till Strowig, Sylvain Brisse, Lars Barquist, Qimron Udi, David Bikard, Chase L Beisel
Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial activity. Nucleic acids research (2024)
Elena Vialetto, Solange Miele, Moran G Goren, Jiaqi Yu, Yanying Yu, Daphne Collias, Beatriz Beamud, Lisa Osbelt, Marta Lourenço, Till Strowig, Sylvain Brisse, Lars Barquist, Qimron Udi, David Bikard, Chase L Beisel
Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial activity. Nucleic acids research 52 (10) (2024)
Maximilian Seege, Erich Schöls, Lars Barquist
s CIRCLE-An interactive visual exploration tool for single cell RNA-Seq data. NAR genomics and bioinformatics 6 (3) (2024)
Sandra Gawlitt, Scott P Collins, Yanying Yu, Samuel A Blackman, Lars Barquist, Chase L Beisel
Expanding the flexibility of base editing for high-throughput genetic screens in bacteria. Nucleic acids research (2024)
Yanying Yu, Sandra Gawlitt, Lisa Barros de Andrade E Sousa, Erinc Merdivan, Marie Piraud, Chase L Beisel, Lars Barquist
Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration. Genome biology 25 (1) (2024)
Willow Kion-Crosby, Lars Barquist
Network depth affects inference of gene sets from bacterial transcriptomes using denoising autoencoders. Bioinformatics advances 4 (1) (2024)
Geraldine J Sullivan, Lars Barquist, Amy K Cain
A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria. mSystems 9 (4) (2024)
Elena Vialetto, Solange Miele, Moran G Goren, Jiaqi Yu, Yanying Yu, Daphne Collias, Beatriz Beamud, Lisa Osbelt, Marta Lourenço, Till Strowig, Sylvain Brisse, Lars Barquist, Qimron Udi, David Bikard, Chase L Beisel
Systematic interrogation of CRISPR antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide- and strain-dependent features influencing antimicrobial activity. Nucleic acids research 52 (10) (2024)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan J Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity. Nature microbiology 9 (4) (2024)
Maximilian Seege, Erich Schöls, Lars Barquist
s CIRCLE-An interactive visual exploration tool for single cell RNA-Seq data. NAR genomics and bioinformatics 6 (3) (2024)
Geraldine J Sullivan, Lars Barquist, Amy K Cain
A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria. mSystems 9 (4) (2024)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan J Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity. Nature microbiology 9 (4) (2024)
Chandradhish Ghosh, Linda Popella, V Dhamodharan, Jakob Jung, Julia Dietzsch, Lars Barquist, Claudia Höbartner, Jörg Vogel
A comparative analysis of peptide-delivered antisense antibiotics using diverse nucleotide mimics. RNA (New York, N.Y.) 30 (6) (2024)
Chandradhish Ghosh, Linda Popella, V Dhamodharan, Jakob Jung, Julia Dietzsch, Lars Barquist, Claudia Höbartner, Jörg Vogel
A comparative analysis of peptide-delivered antisense antibiotics employing diverse nucleotide mimics. RNA (New York, N.Y.) (2024)
Yanying Yu, Sandra Gawlitt, Lisa Barros de Andrade E Sousa, Erinc Merdivan, Marie Piraud, Chase L Beisel, Lars Barquist
Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration. Genome biology 25 (1) (2024)
Laura Jenniches, Charlotte Michaux, Linda Popella, Sarah Reichardt, Jörg Vogel, Alexander J Westermann, Lars Barquist
Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Laura Jenniches, Charlotte Michaux, Linda Popella, Sarah Reichardt, Jörg Vogel, Alexander J Westermann, Lars Barquist
Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives. Proceedings of the National Academy of Sciences of the United States of America 121 (14) (2024)
Geraldine J Sullivan, Lars Barquist, Amy K Cain
A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria. mSystems 9 (4) (2024)
Chandradhish Ghosh, Linda Popella, V Dhamodharan, Jakob Jung, Julia Dietzsch, Lars Barquist, Claudia Höbartner, Jörg Vogel
A comparative analysis of peptide-delivered antisense antibiotics using diverse nucleotide mimics. RNA (New York, N.Y.) 30 (6) (2024)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan J Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity. Nature microbiology 9 (4) (2024)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan J Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity. Nature microbiology 9 (4) (2024)
Chandradhish Ghosh, Linda Popella, V Dhamodharan, Jakob Jung, Julia Dietzsch, Lars Barquist, Claudia Höbartner, Jörg Vogel
A comparative analysis of peptide-delivered antisense antibiotics using diverse nucleotide mimics. RNA (New York, N.Y.) 30 (6) (2024)
Jakob J Jung, Linda Popella, Phuong Thao Do, Patrick Pfau, Jörg Vogel, Lars Barquist
Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON webserver. RNA (New York, N.Y.) (2023)
Daniel Ryan, Elise Bornet, Gianluca Prezza, Shuba Varshini Alampalli, Taís Franco de Carvalho, Hannah Felchle, Titus Ebbecke, Regan Hayward, Adam M Deutschbauer, Lars Barquist, Alexander J Westermann
An integrated transcriptomics-functional genomics approach reveals a small RNA that modulates Bacteroides thetaiotaomicron sensitivity to tetracyclines. bioRxiv : the preprint server for biology (2023)
Ram P Maharjan, Geraldine J Sullivan, Felise G Adams, Bhumika S Shah, Jane Hawkey, Natasha Delgado, Lucie Semenec, Hue Dinh, Liping Li, Francesca L Short, Julian Parkhill, Ian T Paulsen, Lars Barquist, Bart A Eijkelkamp, Amy K Cain
DksA is a conserved master regulator of stress response in Acinetobacter baumannii. Nucleic acids research (2023)
Christian Reuter, Laura Hauf, Fabian Imdahl, Rituparno Sen, Ehsan Vafadarnejad, Philipp Fey, Tamara Finger, Nicola G Jones, Heike Walles, Lars Barquist, Antoine-Emmanuel Saliba, Florian Groeber-Becker, Markus Engstler
Vector-borne Trypanosoma brucei parasites develop in artificial human skin and persist as skin tissue forms. Nature communications 14 (1) (2023)
Charlotte Michaux, Milan Gerovac, Elisabeth E Hansen, Lars Barquist, Jörg Vogel
Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens. microLife 4 (2022)
Christina Homberger, Lars Barquist, Jörg Vogel
Ushering in a new era of single-cell transcriptomics in bacteria. microLife 3 (2022)
Jens Hör, Jakob Jung, Svetlana Ðurica-Mitić, Lars Barquist, Jörg Vogel
INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors. Nucleic acids research (2022)
Yael Yair, Charlotte Michaux, Dvora Biran, Jörg Bernhard, Jörg Vogel, Lars Barquist, Eliora Z Ron
Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli. mSystems 7 (4) (2022)
Falk Ponath, Caroline Tawk, Yan Zhu, Lars Barquist, Franziska Faber, Jörg Vogel
RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum. Nature microbiology 6 (8) (2021)
Chunlei Jiao, Sahil Sharma, Gaurav Dugar, Natalia L Peeck, Thorsten Bischler, Franziska Wimmer, Yanying Yu, Lars Barquist, Christoph Schoen, Oliver Kurzai, Cynthia Mira Sharma, Chase L Beisel
Noncanonical crRNAs derived from host transcripts enable multiplexable RNA detection by Cas9. Science (New York, N.Y.) 372 (6545) (2021)
Bozena Mika-Gospodorz, Suparat Giengkam, Alexander J Westermann, Jantana Wongsantichon, Willow Kion-Crosby, Suthida Chuenklin, Loo Chien Wang, Piyanate Sunyakumthorn, Radoslaw Mikolaj Sobota, Selvakumar Subbian, Jörg Vogel, Lars Barquist, Jeanne Salje
Dual RNA-seq of Orientia tsutsugamushi informs on host-pathogen interactions for this neglected intracellular human pathogen. Nature communications 11 (1) (2020)
Amy K Cain, Lars Barquist, Andrew L Goodman, Ian T Paulsen, Julian Parkhill, Tim van Opijnen
A decade of advances in transposon-insertion sequencing. Nature reviews. Genetics 21 (9) (2020)
Daniel Ryan, Laura Jenniches, Sarah Reichardt, Lars Barquist, Alexander J Westermann
A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron. Nature communications 11 (1) (2020)
Elisa Venturini, Sarah L Svensson, Sandra Maaß, Rick Gelhausen, Florian Eggenhofer, Lei Li, Amy K Cain, Julian Parkhill, Dörte Becher, Rolf Backofen, Lars Barquist, Cynthia Mira Sharma, Alexander J Westermann, Jörg Vogel
A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence. microLife 1 (1) (2020)
Saskia Bauriedl, Milan Gerovac, Nadja Heidrich, Thorsten Bischler, Lars Barquist, Jörg Vogel, Christoph Schoen
The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition. Nature communications 11 (1) (2020)
Lars Barquist
Plugging Small RNAs into the Network. mSystems 5 (3) (2020)
Alysha G Elliott, Johnny X Huang, Søren Neve, Johannes Zuegg, Ingrid A Edwards, Amy K Cain, Christine J Boinett, Lars Barquist, Carina Vingsbo Lundberg, Jason Steen, Mark S Butler, Mehdi Mobli, Kaela M Porter, Mark A T Blaskovich, Sergio Lociuro, Magnus Strandh, Matthew A Cooper
An amphipathic peptide with antibiotic activity against multidrug-resistant Gram-negative bacteria. Nature communications 11 (1) (2020)
Edna M Ondari, Elizabeth J Klemm, Chisomo L Msefula, Moataz Abd El Ghany, Jennifer N Heath, Derek J Pickard, Lars Barquist, Gordon Dougan, Robert A Kingsley, Calman A MacLennan
Rapid transcriptional responses to serum exposure are associated with sensitivity and resistance to antibody-mediated complement killing in invasive Salmonella Typhimurium ST313. Wellcome open research 4 (2019)
Bethany R Jose, Paul P Gardner, Lars Barquist
Transcriptional noise and exaptation as sources for bacterial sRNAs. Biochemical Society transactions 47 (2) (2019)
Nicole E Wheeler, Paul P Gardner, Lars Barquist
Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica. PLoS genetics 14 (5) (2018)
Alexander J Westermann, Lars Barquist, Jörg Vogel
Resolving host-pathogen interactions by dual RNA-seq. PLoS pathogens 13 (2) (2017)
Lars Barquist, Alexander J Westermann, Jörg Vogel
Molecular phenotyping of infection-associated small non-coding RNAs. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 371 (1707) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Lars Barquist