Dmitri I Svergun (Dmitri Svergun, D I Svergun)

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 37

Top Topics

Plasmodium Falciparum

Crystal Structure

Top Venues

Journal of applied crystallography

Science advances

Nature communications

The Journal of biological chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Clement E Blanchet, Adam R Round, Haydyn D T Mertens, Kartik Ayyer, Melissa Ann Graewert, Salah Awel, Daniel Franke, Katerina Dörner, Sasa Bajt, Richard Bean, Tânia F Custódio, Raphael de Wijn, Juncheng E, Alessandra Henkel, Andrey Gruzinov, Cy Michael Jeffries, Yoonhee Kim, Henry J Kirkwood, Marco Kloos, Juraj Knoška, Jayanath C P Koliyadu, Romain Letrun, Christian Löw, Jana Makroczyova, Abhishek Mall, Rob Meijers, Gisel Esperanza Pena Murillo, Dominik Oberthür, Ekaterina Round, Carolin Seuring, Marcin Sikorski, Patrik Vagovic, Joana Valerio, Tamme Wollweber, Yulong Zhuang, Joachim Schulz, Heinrich Haas, Henry N Chapman, Adrian P Mancuso, Dmitri I Svergun
Form factor determination of biological molecules with X-ray free electron laser small-angle scattering (XFEL-SAS). Communications biology 6 (1) (2023)
Mariana Sacerdoti, Lissy Z F Gross, Andrew M Riley, Karin Zehnder, Abhijeet Ghode, Sebastián Klinke, Ganesh Srinivasan Anand, Kristina A Paris, Angelika Winkel, Amanda Katherina Herbrand, H Yasmin Godage, Gyles E Cozier, Evelyn Süß, Jörg O Schulze, Daniel Pastor-Flores, Mariela Bollini, María Victoria Cappellari, Dmitri I Svergun, Melissa Ann Graewert, Pedro F Aramendia, Alejandro E Leroux, Barry V L Potter, Carlos Jaime Camacho, Ricardo M Biondi
Modulation of the substrate specificity of the kinase PDK1 by distinct conformations of the full-length protein. Science signaling 16 (789) (2023)
Gabriela Guédez, Gabriele Loers, Cy Michael Jeffries, Sandra Kozak, Rob Meijers, Dmitri I Svergun, Melitta Schachner, Christian Löw
X-ray structure and function of fibronectin domains two and three of the neural cell adhesion molecule L1. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 37 (3) (2023)
Gabriela Guédez, Gabriele Loers, Cy Michael Jeffries, Sandra Kozak, Rob Meijers, Dmitri I Svergun, Melitta Schachner, Christian Löw
X-ray structure and function of fibronectin domains two and three of the neural cell adhesion molecule L1. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 37 (3) (2023)
Goksin Liu, Erhan Ekmen, Farzaneh Jalalypour, Haydyn D T Mertens, Cy Michael Jeffries, Dmitri I Svergun, Ali Rana Atilgan, Canan Atilgan, Zehra Sayers
Conformational multiplicity of bacterial ferric binding protein revealed by small angle x-ray scattering and molecular dynamics calculations. The Journal of chemical physics 158 (8) (2023)
Christophe Rouillon, Niels Schneberger, Haotian Chi, Katja Blumenstock, Stefano Da Vela, Katrin Ackermann, Jonas Moecking, Martin F Peter, Wolfgang Boenigk, Reinhard Seifert, Bela Ernest Bode, Jonathan L Schmid-Burgk, Dmitri I Svergun, Matthias Geyer, Malcolm F White, Gregor Hagelueken
Antiviral signaling by a cyclic nucleotide activated CRISPR protease. Nature (2022)
Stefan R Marsden, Hein J Wijma, Michael K F Mohr, Inês Justo, Peter Leon Hagedoorn, Jesper Laustsen, Cy M Jeffries, Dmitri I Svergun, Luuk Mestrom, Duncan G G McMillan, Isabel Bento, Ulf Hanefeld
Substrate Induced Movement of the Metal Cofactor between Active and Resting State. Angewandte Chemie (International ed. in English) 61 (49) (2022)
Mihaly Varadi, Sreenath Nair, Ian Sillitoe, Gerardo Tauriello, Stephen Anyango, Stefan Bienert, Clemente Borges, Mandar S Deshpande, Tim Green, Demis Hassabis, Andras Hatos, Tamás Hegedűs, Maarten L Hekkelman, Robbie P Joosten, John M Jumper, Agata Laydon, Dmitry S Molodenskiy, Damiano Piovesan, Edoardo Salladini, Steven L Salzberg, Markus J Sommer, Martin Steinegger, Erzsebet Suhajda, Dmitri I Svergun, Luiggi Tenorio-Ku, Silvio C E Tosatto, Kathryn Tunyasuvunakool, Andrew Mark Waterhouse, Augustin Žídek, Torsten Schwede, Christine A Orengo, Sameer Velankar
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. GigaScience 11 (2022)
Ivan Corbeski, Xiaohu Guo, Bruna V Eckhardt, Domenico Fasci, Wouter Wiegant, Melissa A Graewert, Kees Vreeken, Hans Wienk, Dmitri I Svergun, Albert J R Heck, Haico van Attikum, Rolf Boelens, Titia K Sixma, Francesca Mattiroli, Hugo van Ingen
Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF. Science advances 8 (30) (2022)
Jill Trewhella, Patrice Vachette, Jan Bierma, Clement E Blanchet, Emre Brookes, Srinivas Chakravarthy, Leonie Chatzimagas, Thomas E Cleveland, Nathan Philip Cowieson, Ben Crossett, Anthony P Duff, Daniel Franke, Frank Gabel, Richard E Gillilan, Melissa Ann Graewert, Alexander Grishaev, J Mitchell Guss, Michal Hammel, Jesse B Hopkins, Qingqui Huang, Jochen S Hub, Greg L Hura, Thomas C Irving, Cy Michael Jeffries, Cheol Jeong, Nigel M Kirby, Susan Krueger, Anne Martel, Tsutomu Matsui, Na Li, Javier Pérez, Lionel Porcar, Thierry Prangé, Ivan Rajkovic, Mattia Rocco, Daniel J Rosenberg, Timothy M Ryan, Soenke Seifert, Hiroshi Sekiguchi, Dmitri I Svergun, Susana C M Teixeira, Aurelien Thureau, Thomas M Weiss, Andrew E Whitten, Kathleen Wood, Xiaobing Zuo
A round-robin approach provides a detailed assessment of biomolecular small-angle scattering data reproducibility and yields consensus curves for benchmarking. Acta crystallographica. Section D, Structural biology 78 (Pt 11) (2022)
Karen Manalastas-Cantos, Petr Valeryevich Konarev, Nelly R Hajizadeh, Alexey G Kikhney, Maxim V Petoukhov, Dmitry S Molodenskiy, Alejandro Panjkovich, Haydyn D T Mertens, Andrey Gruzinov, Clemente Borges, Cy Michael Jeffries, Dmitri I Svergun, Daniel Franke
ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis. Journal of applied crystallography 54 (Pt 1) (2021)
Andrey Yu Gruzinov, Martin A Schroer, Karen Manalastas-Cantos, Alexey G Kikhney, Nelly R Hajizadeh, Florian Schulz, Daniel Franke, Dmitri I Svergun, Clement E Blanchet
Anomalous SAXS at P12 beamline EMBL Hamburg: instrumentation and applications. Journal of synchrotron radiation 28 (Pt 3) (2021)
Fabio Lapenta, Jana Aupič, Marco Vezzoli, Žiga Strmšek, Stefano Da Vela, Dmitri I Svergun, José María Carazo, Roberto Melero, Roman Jerala
Self-assembly and regulation of protein cages from pre-organised coiled-coil modules. Nature communications 12 (1) (2021)
Dietmar Christian Florian Wieland, Martin A Schroer, Andrey Yu Gruzinov, Clement E Blanchet, Cy Michael Jeffries, Dmitri I Svergun
ASAXS measurements on ferritin and apoferritin at the bioSAXS beamline P12 (PETRA III, DESY). Journal of applied crystallography 54 (Pt 3) (2021)
Fabio Lapenta, Jana Aupič, Marco Vezzoli, Žiga Strmšek, Stefano Da Vela, Dmitri I Svergun, José María Carazo, Roberto Melero, Roman Jerala
Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules. Nature communications 12 (1) (2021)
Boris Krichel, Ganesh Bylapudi, Christina Schmidt, Clement Blanchet, Robin Schubert, Lea Brings, Martin Köhler, Renato Zenobi, Dmitri I Svergun, Kristina Lorenzen, Ramakanth Madhugiri, John Ziebuhr, Charlotte Uetrecht
Hallmarks of Alpha- and Betacoronavirus non-structural protein 7+8 complexes. Science advances 7 (10) (2021)
Luise Linsenmeier, Behnam Mohammadi, Mohsin Shafiq, Karl J Frontzek, Julia Bär, Amulya Nidhi Shrivastava, Markus Damme, Feizhi Song, Alexander Schwarz, Stefano Da Vela, Tania Massignan, Sebastian Jung, Angela Correia, Matthias Schmitz, Berta Puig, Simone Hornemann, Inga Zerr, Jörg Tatzelt, Emiliano Biasini, Paul Saftig, Michaela Schweizer, Dmitri I Svergun, Ladan Amin, Federica Mazzola, Luca Varani, Simrika Thapa, Sabine Gilch, Hermann M Schatzl, David A Harris, Antoine Triller, Marina Mikhaylova, Adriano Aguzzi, Hermann Clemens Altmeppen, Markus Glatzel
Ligands binding to the prion protein induce its proteolytic release with therapeutic potential in neurodegenerative proteinopathies. Science advances 7 (48) (2021)
Javier Lizarrondo, David P Klebl, Stephan Niebling, Marc Abella, Martin A Schroer, Haydyn D T Mertens, Katharina Veith, Roland Thuenauer, Dmitri I Svergun, Michal Skruzny, Frank Sobott, Stephen P Muench, Maria M Garcia Alai
Structure of the endocytic adaptor complex reveals the basis for efficient membrane anchoring during clathrin-mediated endocytosis. Nature communications 12 (1) (2021)
Petr V Konarev, Dmitri I Svergun
Limitations of the iterative electron density reconstruction algorithm from solution scattering data. Nature methods 18 (3) (2021)
Petr Valeryevich Konarev, Melissa A Graewert, Cy Michael Jeffries, Masakazu Fukuda, Taisiia A Cheremnykh, Vladimir V Volkov, Dmitri I Svergun
EFAMIX, a tool to decompose inline chromatography SAXS data from partially overlapping components. Protein science : a publication of the Protein Society (2021)
Yury L Ryzhykau, Philipp S Orekhov, Maksim I Rulev, Alexey V Vlasov, Igor A Melnikov, Dmytro A Volkov, Mikhail Yu Nikolaev, Dmitrii V Zabelskii, Tatiana N Murugova, Vladimir V Chupin, Andrey V Rogachev, Andrey Yu Gruzinov, Dmitri I Svergun, Martha E Brennich, Ivan Yu Gushchin, Montserrat Soler-Lopez, Arne Bothe, Georg Büldt, Gordon A Leonard, Martin Engelhard, Aleksandr I Kuklin, Valentin I Gordeliy
Molecular model of a sensor of two-component signaling system. Scientific reports 11 (1) (2021)
Petr Valeryevich Konarev, Andrey Yu Gruzinov, Haydyn D T Mertens, Dmitri I Svergun
Restoring structural parameters of lipid mixtures from small-angle X-ray scattering data. Journal of applied crystallography 54 (Pt 1) (2021)
Komal Soni, Georg Kempf, Karen Manalastas-Cantos, Astrid Hendricks, Dirk Flemming, Julien Guizetti, Bernd Simon, Friedrich Frischknecht, Dmitri I Svergun, Klemens Wild, Irmgard Sinning
Structural analysis of the SRP Alu domain from Plasmodium falciparum reveals a non-canonical open conformation. Communications biology 4 (1) (2021)
Antonio Sponga, Joan L Arolas, Thomas C Schwarz, Cy Michael Jeffries, Ariadna Rodriguez Chamorro, Julius Kostan, Andrea Ghisleni, Friedel Drepper, Anton Polyansky, Euripedes De Almeida Ribeiro, Miriam Pedron, Anna Zawadzka-Kaźmierczuk, Georg Mlynek, Thomas Peterbauer, Pierantonio Doto, Claudia Schreiner, Eneda Hollerl, Borja Mateos, Leonhard Geist, Georgine Faulkner, Wiktor Koźmiński, Dmitri I Svergun, Bettina Warscheid, Bojan Zagrovic, Mathias Gautel, Robert Konrat, Kristina Djinovic-Carugo
Order from disorder in the sarcomere: FATZ forms a fuzzy but tight complex and phase-separated condensates with α-actinin. Science advances 7 (22) (2021)
Janine Mia Lahey-Rudolph, Robert Schönherr, Cy Michael Jeffries, Clément E Blanchet, Juliane Boger, Ana Sofia Ferreira Ramos, Winnie Maria Riekehr, Dimitris-Panagiotis Triandafillidis, Alexandros Valmas, Irene Margiolaki, Dmitri I Svergun, Lars Redecke
Rapid screening of in cellulo grown protein crystals via a small-angle X-ray scattering/X-ray powder diffraction synergistic approach. Journal of applied crystallography 53 (Pt 5) (2020)
Daniel Franke, Nelly R Hajizadeh, Dmitri I Svergun
Simulation of small-angle X-ray scattering data of biological macromolecules in solution. Journal of applied crystallography 53 (Pt 2) (2020)
Daniel P Duarte, Allan J Lamontanara, Giuseppina La Sala, Sukyo Jeong, Yoo-Kyoung Sohn, Alejandro Panjkovich, Sandrine Georgeon, Tim Kükenshöner, Maria Jose Marcaida, Florence Pojer, Marco De Vivo, Dmitri I Svergun, Hak-Sung Kim, Matteo Dal Peraro, Oliver Hantschel
Btk SH2-kinase interface is critical for allosteric kinase activation and its targeting inhibits B-cell neoplasms. Nature communications 11 (1) (2020)
Alexey G Kikhney, Clemente R Borges, Dmitry S Molodenskiy, Cy M Jeffries, Dmitri I Svergun
SASBDB: Towards an automatically curated and validated repository for biological scattering data. Protein science : a publication of the Protein Society 29 (1) (2019)
Panagis Polykretis, Enrico Luchinat, Alessio Bonucci, Andrea Giachetti, Melissa A Graewert, Dmitri I Svergun, Lucia Banci
Conformational characterization of full-length X-chromosome-linked inhibitor of apoptosis protein (XIAP) through an integrated approach. IUCrJ 6 (Pt 5) (2019)
Karen Manalastas-Cantos, Marc Kschonsak, Christian H Haering, Dmitri I Svergun
Solution structure and flexibility of the condensin HEAT-repeat subunit Ycg1. The Journal of biological chemistry 294 (37) (2019)
Gustavo Fuertes, Niccolo Banterle, Kiersten M Ruff, Aritra Chowdhury, Rohit V Pappu, Dmitri I Svergun, Edward Anton Lemke
Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water". Science (New York, N.Y.) 361 (6405) (2018)
Petr V Konarev, Dmitri I Svergun
Direct shape determination of intermediates in evolving macromolecular solutions from small-angle scattering data. IUCrJ 5 (Pt 4) (2018)
Nelly R Hajizadeh, Daniel Franke, Dmitri I Svergun
Integrated beamline control and data acquisition for small-angle X-ray scattering at the P12 BioSAXS beamline at PETRAIII storage ring DESY. Journal of synchrotron radiation 25 (Pt 3) (2018)
Sven Falke, Karsten Dierks, Clement Blanchet, Melissa Graewert, Florent Cipriani, Rob Meijers, Dmitri I Svergun, Christian Betzel
Multi-channel in situ dynamic light scattering instrumentation enhancing biological small-angle X-ray scattering experiments at the PETRA III beamline P12. Journal of synchrotron radiation 25 (Pt 2) (2018)
Anne T Tuukkanen, Alessandro Spilotros, Dmitri I Svergun
Progress in small-angle scattering from biological solutions at high-brilliance synchrotrons. IUCrJ 4 (Pt 5) (2017)
Marco Igor Valencia-Sánchez, Annia Rodríguez-Hernández, Ruben Ferreira, Hugo Aníbal Santamaría-Suárez, Marcelino Arciniega, Anne-Catherine Dock-Bregeon, Dino Moras, Brice Beinsteiner, Haydyn D T Mertens, Dmitri I Svergun, Luis G Brieba, Morten Grøtli, Alfredo Torres-Larios
Structural Insights into the Polyphyletic Origins of Glycyl tRNA Synthetases. The Journal of biological chemistry 291 (28) (2016)
Matthew Dunne, Stefan Leicht, Boris Krichel, Haydyn D T Mertens, Andrew Thompson, Jeroen Krijgsveld, Dmitri I Svergun, Natalia Gómez-Torres, Sonia Garde, Charlotte Uetrecht, Arjan Narbad, Melinda J Mayer, Rob Meijers
Crystal Structure of the CTP1L Endolysin Reveals How Its Activity Is Regulated by a Secondary Translation Product. The Journal of biological chemistry 291 (10) (2015)