Jin-Gui Chen

ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 42

Top Venues

G3 (Bethesda, Md.)

Biodesign research

Nature communications

Plant physiology

Oak Ridge National Laboratory

Nanjing Agricultural University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Oak Ridge National Laboratory

United States

Staff Scientist; Senior Staff Scientist :: Biosciences Division

University of British Columbia

Canada

Assistant Professor :: Department of Botany

University of North Carolina at Chapel Hill

United States

Postdoctoal Research Associate; Senior Research Associate :: Department of Biology

Warwick HRI

United Kingdom

Royal Society Postdoctoral Fellow :: Department of Cell Physiology

Education History

Nanjing Agricultural University

China

PHD :: Department of Agronomy

Publications

Michael F Nagle, Jialin Yuan, Damanpreet Kaur, Cathleen Ma, Ekaterina Peremyslova, Yuan Jiang, Alexa Niño de Rivera, Sara S Jawdy, Jin-Gui Chen, Kai Feng, Timothy B Yates, Gerald A Tuskan, Wellington Muchero, Li Fuxin, Steven H Strauss
GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa. G3 (Bethesda, Md.) 14 (4) (2024)
Michael F Nagle, Jialin Yuan, Damanpreet Kaur, Cathleen Ma, Ekaterina Peremyslova, Yuan Jiang, Alexa Niño de Rivera, Sara S Jawdy, Jin-Gui Chen, Kai Feng, Timothy B Yates, Gerald A Tuskan, Wellington Muchero, Li Fuxin, Steven H Strauss
GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa. G3 (Bethesda, Md.) (2024)
Mengjun Shu, Timothy B Yates, Cai John, Anne E Harman-Ware, Renee M Happs, Nathan Bryant, Sara S Jawdy, Arthur J Ragauskas, Gerald A Tuskan, Wellington Muchero, Jin-Gui Chen
Providing biological context for GWAS results using eQTL regulatory and co-expression networks in Populus. The New phytologist (2024)
Michael F Nagle, Jialin Yuan, Damanpreet Kaur, Cathleen Ma, Ekaterina Peremyslova, Yuan Jiang, Alexa Niño de Rivera, Sara S Jawdy, Jin-Gui Chen, Kai Feng, Timothy B Yates, Gerald A Tuskan, Wellington Muchero, Li Fuxin, Steven H Strauss
GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa. G3 (Bethesda, Md.) 14 (4) (2024)
Michael F Nagle, Jialin Yuan, Damanpreet Kaur, Cathleen Ma, Ekaterina Peremyslova, Yuan Jiang, Alexa Niño de Rivera, Sara S Jawdy, Jin-Gui Chen, Kai Feng, Timothy B Yates, Gerald A Tuskan, Wellington Muchero, Li Fuxin, Steven H Strauss
GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpa. G3 (Bethesda, Md.) 14 (4) (2024)
Avinash Sreedasyam, Christopher Plott, Md Shakhawat Hossain, John T Lovell, Jerry W Jenkins, Jerry W Jenkins, Christopher Daum, Kerrie Barry, Joseph Carlson, Shengqiang Shu, Jeremy Phillips, Mojgan Amirebrahimi, Matthew Zane, Mei Wang, David Goodstein, Fabian B Haas, Manuel Hiss, Pierre-François Perroud, Sara S Jawdy, Yongil Yang, Rongbin Hu, Jenifer Johnson, Janette Kropat, Sean D Gallaher, Anna Lipzen, Eugene V Shakirov, Xiaoyu Weng, Ivone Torres-Jerez, Brock Weers, Daniel Conde, Marilia R Pappas, Lifeng Liu, Andrew Muchlinski, Hui Jiang, Christine Shyu, Pu Huang, Jose Sebastian, Carol Laiben, Alyssa Medlin, Sankalpi Carey, Alyssa A Carrell, Jin-Gui Chen, Mariano Perales, Kankshita Swaminathan, Isabel Allona, Dario Grattapaglia, Elizabeth A Cooper, Dorothea Tholl, John P Vogel, David J Weston, Xiaohan Yang, Thomas P Brutnell, Elizabeth A Kellogg, Ivan R Baxter, Michael Udvardi, Yuhong Tang, Todd C Mockler, Thomas E Juenger, John E Mullet, Stefan Andreas Rensing, Gerald A Tuskan, Sabeeha S Merchant, Gary Stacey, Jeremy Schmutz
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic acids research (2023)
Tao Yao, Jin Zhang, Timothy B Yates, Him K Shrestha, Nancy L Engle, Raphael Ployet, Cai John, Kai Feng, William Patrick Bewg, Margot S S Chen, Haiwei Lu, Scott A Harding, Zhenzhen Qiao, Sara S Jawdy, Mengjun Shu, Wenya Yuan, Khadijeh Mozaffari, Anne E Harman-Ware, Renee M Happs, Larry M York, Brad M Binder, Yuko Yoshinaga, Christopher Daum, Timothy J Tschaplinski, Paul E Abraham, Chung-Jui Tsai, Kerrie Barry, Anna Lipzen, Jeremy Schmutz, Gerald A Tuskan, Jin-Gui Chen, Wellington Muchero
Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus. The New phytologist (2023)
Miaomiao Li, Tao Yao, Wanru Lin, Will E Hinckley, Mary Galli, Wellington Muchero, Andrea Gallavotti, Jin-Gui Chen, Shao-Shan Carol Huang
Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors. Nature communications 14 (1) (2023)
Guoliang Yuan, Yang Liu, Tao Yao, Wellington Muchero, Jin-Gui Chen, Gerald A Tuskan, Xiaohan Yang
eYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa × P. deltoides Clone '52-225'. Plants (Basel, Switzerland) 12 (8) (2023)
Guoliang Yuan, Yang Liu, Tao Yao, Wellington Muchero, Jin-Gui Chen, Gerald A Tuskan, Xiaohan Yang
eYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa × P. deltoides Clone '52-225'. Plants (Basel, Switzerland) 12 (8) (2023)
Him K Shrestha, Tao Yao, Zhenzhen Qiao, Wellington Muchero, Robert L Hettich, Jin-Gui Chen, Paul E Abraham
Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza Colonization. Cells 12 (7) (2023)
Degao Liu, Dan Tang, Meng Xie, Jin Zhang, Longmei Zhai, Jiangping Mao, Chao Luo, Anna Lipzen, Yu Zhang, Emily Savage, Guoliang Yuan, Hao-Bo Guo, Dimiru Tadesse, Rongbin Hu, Sara S Jawdy, Hua Cheng, Linling Li, Huseyin Yer, Miranda M Clark, Huayu Sun, Jiyuan Shi, Roshani Budhathoki, Rahul Kumar, Troy Kamuda, Yanjun Li, Christa Pennacchio, Kerrie W Barry, Jeremy Schmutz, Rajiv J Berry, Wellington Muchero, Jin-Gui Chen, Yi Li, Gerald A Tuskan, Xiaohan Yang
Agave REVEILLE1 regulates the onset and release of seasonal dormancy in Populus. Plant physiology 191 (3) (2023)
Jin Zhang, Xiaqin Wang, Hsin-Tzu Wang, Zhenzhen Qiao, Tao Yao, Meng Xie, Breeanna R Urbanowicz, Wei Zeng, Sara S Jawdy, Lee E Gunter, Xiaohan Yang, Olaf Czarnecki, Sharon Regan, Armand Séguin, William Rottmann, Kimberly A Winkeler, Robert W Sykes, Anna Lipzen, Christopher Daum, Kerrie W Barry, Meng-Zhu Lu, Gerald A Tuskan, Wellington Muchero, Jin-Gui Chen
Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus. Plant physiology (2023)
Miaomiao Li, Tao Yao, Wanru Lin, Will E Hinckley, Mary Galli, Wellington Muchero, Andrea Gallavotti, Jin-Gui Chen, Shao-Shan Carol Huang
Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors. Nature communications 14 (1) (2023)
Brennan Hyden, Dana L Carper, Paul E Abraham, Guoliang Yuan, Tao Yao, Leo Baumgart, Yu Zhang, Cindy Chen, Ronan C O'Malley, Jin-Gui Chen, Xiaohan Yang, Robert L Hettich, Gerald A Tuskan, Lawrence B Smart
Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination. Plant direct 7 (11) (2023)
Miaomiao Li, Tao Yao, Wanru Lin, Will E Hinckley, Mary Galli, Wellington Muchero, Andrea Gallavotti, Jin-Gui Chen, Shao-Shan Carol Huang
Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors. Nature communications 14 (1) (2023)
Guoliang Yuan, Yang Liu, Tao Yao, Wellington Muchero, Jin-Gui Chen, Gerald A Tuskan, Xiaohan Yang
eYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa × P. deltoides Clone '52-225'. Plants (Basel, Switzerland) 12 (8) (2023)
Miaomiao Li, Tao Yao, Wanru Lin, Will E Hinckley, Mary Galli, Wellington Muchero, Andrea Gallavotti, Jin-Gui Chen, Shao-Shan Carol Huang
Double DAP-seq uncovered synergistic DNA binding of interacting bZIP transcription factors. Nature communications 14 (1) (2023)
Guoliang Yuan, Yang Liu, Tao Yao, Wellington Muchero, Jin-Gui Chen, Gerald A Tuskan, Xiaohan Yang
eYGFPuv-Assisted Transgenic Selection in Populus deltoides WV94 and Multiplex Genome Editing in Protoplasts of P. trichocarpa × P. deltoides Clone '52-225'. Plants (Basel, Switzerland) 12 (8) (2023)
Raja S Payyavula, Raghuram Badmi, Sara S Jawdy, Miguel Rodriguez, Lee Gunter, Robert W Sykes, Kimberly A Winkeler, Cassandra M Collins, William H Rottmann, Jin-Gui Chen, Xiaohan Yang, Gerald A Tuskan, Udaya C Kalluri
Biomass formation and sugar release efficiency of Populus modified by altered expression of a NAC transcription factor. Plant direct 6 (8) (2022)
Degao Liu, Dan Tang, Meng Xie, Jin Zhang, Longmei Zhai, Jiangping Mao, Chao Luo, Anna Lipzen, Yu Zhang, Emily Savage, Guoliang Yuan, Hao-Bo Guo, Dimiru Tadesse, Rongbin Hu, Sara S Jawdy, Hua Cheng, Linling Li, Huseyin Yer, Miranda M Clark, Huayu Sun, Jiyuan Shi, Roshani Budhathoki, Rahul Kumar, Troy Kamuda, Yanjun Li, Christa Pennacchio, Kerrie W Barry, Jeremy Schmutz, Rajiv J Berry, Wellington Muchero, Jin-Gui Chen, Yi Li, Gerald A Tuskan, Xiaohan Yang
Agave REVEILLE1 regulates the onset and release of seasonal dormancy in Populus. Plant physiology (2022)
Xiao-Li Hu, Haiwei Lu, Md Mahmudul Hassan, Jin Zhang, Guoliang Yuan, Paul E Abraham, Him K Shrestha, Manuel I Villalobos Solis, Jin-Gui Chen, Timothy J Tschaplinski, Mitchel J Doktycz, Gerald A Tuskan, Zong-Ming Max Cheng, Xiaohan Yang
Advances and perspectives in discovery and functional analysis of small secreted proteins in plants. Horticulture research 8 (1) (2021)
Zhenzhen Qiao, Timothy B Yates, Him K Shrestha, Nancy L Engle, Amy Flanagan, Jennifer L Morrell-Falvey, Yali Sun, Timothy J Tschaplinski, Paul E Abraham, Jessy Labbé, Zeng-Yu Wang, Robert L Hettich, Gerald A Tuskan, Wellington Muchero, Jin-Gui Chen
Towards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor-like kinase. Plant biotechnology journal 19 (12) (2021)
Xiaohan Yang, Degao Liu, Haiwei Lu, David J Weston, Jin-Gui Chen, Wellington Muchero, Stanton Martin, Yang Liu, Md Mahmudul Hassan, Guoliang Yuan, Udaya C Kalluri, Timothy J Tschaplinski, Julie C Mitchell, Stan D Wullschleger, Gerald A Tuskan
Biological Parts for Plant Biodesign to Enhance Land-Based Carbon Dioxide Removal. Biodesign research 2021 (2021)
Guoliang Yuan, Haiwei Lu, Dan Tang, Md Mahmudul Hassan, Yi Li, Jin-Gui Chen, Gerald A Tuskan, Xiaohan Yang
Expanding the application of a UV-visible reporter for transient gene expression and stable transformation in plants. Horticulture research 8 (1) (2021)
Guoliang Yuan, Md Mahmudul Hassan, Degao Liu, Sung Don Lim, Won Cheol Yim, John C Cushman, Kasey Markel, Patrick M Shih, Haiwei Lu, David J Weston, Jin-Gui Chen, Timothy J Tschaplinski, Gerald A Tuskan, Xiaohan Yang
Biosystems Design to Accelerate C 3 -to-CAM Progression. Biodesign research 2020 (2020)
Xiaohan Yang, June I Medford, Kasey Markel, Patrick M Shih, Henrique C De Paoli, Cong T Trinh, Alistair J McCormick, Raphael Ployet, Steven G Hussey, Alexander A Myburg, Poul Erik Jensen, Md Mahmudul Hassan, Jin Zhang, Wellington Muchero, Udaya C Kalluri, Hengfu Yin, Renying Zhuo, Paul E Abraham, Jin-Gui Chen, David J Weston, Yinong Yang, Degao Liu, Yi Li, Jessy L Labbé, Bing Yang, Jun Hyung Lee, Robert W Cottingham, Stanton Martin, Mengzhu Lu, Timothy J Tschaplinski, Guoliang Yuan, Haiwei Lu, Priya Ranjan, Julie C Mitchell, Stan D Wullschleger, Gerald A Tuskan
Plant Biosystems Design Research Roadmap 1.0. Biodesign research 2020 (2020)
Md Mahmudul Hassan, Guoliang Yuan, Jin-Gui Chen, Gerald A Tuskan, Xiaohan Yang
Prime Editing Technology and Its Prospects for Future Applications in Plant Biology Research. Biodesign research 2020 (2020)
Haiwei Lu, Guoliang Yuan, Steven H Strauss, Timothy J Tschaplinski, Gerald A Tuskan, Jin-Gui Chen, Xiaohan Yang
Reconfiguring Plant Metabolism for Biodegradable Plastic Production. Biodesign research 2020 (2020)
Meng Xie, Jin Zhang, Tao Yao, Anthony C Bryan, Yunqiao Pu, Jessy L Labbé, Dale A Pelletier, Nancy Engle, Jennifer L Morrell-Falvey, Jeremy Schmutz, Arthur J Ragauskas, Timothy J Tschaplinski, Feng Chen, Gerald A Tuskan, Wellington Muchero, Jin-Gui Chen
Arabidopsis C-terminal binding protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33. The New phytologist 228 (5) (2020)
Jessy L Labbé, Wellington Muchero, Olaf Czarnecki, Juan Wang, Xiaoping Wang, Anthony C Bryan, Kaijie Zheng, Yongil Yang, Meng Xie, Jin Zhang, Dongfang Wang, Peter Meidl, Hemeng Wang, Jennifer L Morrell-Falvey, Kevin R Cope, Lucas G S Maia, Jean-Michel Ané, Ritesh Mewalal, Sara S Jawdy, Lee E Gunter, Wendy Schackwitz, Joel A Martin, François Le Tacon, Ting Li, Zhihao Zhang, Priya Ranjan, Erika Lindquist, Xiaohan Yang, Daniel A Jacobson, Timothy J Tschaplinski, Kerrie Barry, Jeremy Schmutz, Jin-Gui Chen, Gerald A Tuskan
Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase. Nature plants 5 (7) (2019)
Jin Zhang, Meng Xie, Mi Li, Jinhua Ding, Yunqiao Pu, Anthony C Bryan, William Rottmann, Kimberly A Winkeler, Cassandra M Collins, Vasanth Singan, Erika A Lindquist, Sara S Jawdy, Lee E Gunter, Nancy L Engle, Xiaohan Yang, Kerrie Barry, Timothy J Tschaplinski, Jeremy Schmutz, Gerald A Tuskan, Wellington Muchero, Jin-Gui Chen
Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus. Plant biotechnology journal 18 (3) (2019)
Yongil Yang, Chang Geun Yoo, William Rottmann, Kimberly A Winkeler, Cassandra M Collins, Lee E Gunter, Sara S Jawdy, Xiaohan Yang, Yunqiao Pu, Arthur J Ragauskas, Gerald A Tuskan, Jin-Gui Chen
PdWND3A, a wood-associated NAC domain-containing protein, affects lignin biosynthesis and composition in Populus. BMC plant biology 19 (1) (2019)
Kaikai Zhu, Xiaolong Wang, Jinyi Liu, Jun Tang, Qunkang Cheng, Jin-Gui Chen, Zong-Ming Max Cheng
The grapevine kinome: annotation, classification and expression patterns in developmental processes and stress responses. Horticulture research 5 (2018)
Wellington Muchero, Kelsey L Sondreli, Jin-Gui Chen, Breeanna R Urbanowicz, Jin Zhang, Vasanth Singan, Yongil Yang, Robert S Brueggeman, Juan Franco-Coronado, Nivi Abraham, Jeong-Yeh Yang, Kelley W Moremen, Alexandra J Weisberg, Jeff H Chang, Erika Lindquist, Kerrie Barry, Priya Ranjan, Sara Jawdy, Jeremy Schmutz, Gerald A Tuskan, Jared Michael LeBoldus
Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree. Proceedings of the National Academy of Sciences of the United States of America 115 (45) (2018)
Meng Xie, Wellington Muchero, Anthony C Bryan, Kelsey Yee, Hao-Bo Guo, Jin Zhang, Timothy J Tschaplinski, Vasanth R Singan, Erika A Lindquist, Raja S Payyavula, Jaime Barros-Rios, Richard A Dixon, Nancy L Engle, Robert W Sykes, Mark F Davis, Sara S Jawdy, Lee E Gunter, Olivia A Thompson, Stephen P DiFazio, Luke M Evans, Kim Winkeler, Cassandra M Collins, Jeremy Schmutz, Hong Guo, Udaya C Kalluri, Miguel Rodriguez, Kai Feng, Jin-Gui Chen, Gerald A Tuskan
A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in Populus. The Plant cell 30 (7) (2018)
Anthony C Bryan, Jin Zhang, Jianjun Guo, Priya Ranjan, Vasanth Singan, Kerrie Barry, Jeremy Schmutz, Deborah Weighill, Daniel Jacobson, Sara Jawdy, Gerald A Tuskan, Jin-Gui Chen, Wellington Muchero
A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein. G3 (Bethesda, Md.) 8 (8) (2018)
Hainan Tian, Xianling Wang, Hongyan Guo, Yuxin Cheng, Chunjiang Hou, Jin-Gui Chen, Shucai Wang
NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant physiology 174 (4) (2017)
Yongil Yang, Chang Geun Yoo, Kimberly A Winkeler, Cassandra M Collins, Maud A W Hinchee, Sara S Jawdy, Lee E Gunter, Nancy L Engle, Yunqiao Pu, Xiaohan Yang, Timothy J Tschaplinski, Arthur J Ragauskas, Gerald A Tuskan, Jin-Gui Chen
Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus. Biotechnology for biofuels 10 (2017)
Yongil Yang, Chang Geun Yoo, Hao-Bo Guo, William Rottmann, Kimberly A Winkeler, Cassandra M Collins, Lee E Gunter, Sara S Jawdy, Xiaohan Yang, Hong Guo, Yunqiao Pu, Arthur J Ragauskas, Gerald A Tuskan, Jin-Gui Chen
Overexpression of a Domain of Unknown Function 266-containing protein results in high cellulose content, reduced recalcitrance, and enhanced plant growth in the bioenergy crop Populus. Biotechnology for biofuels 10 (2017)
Xiaohan Yang, Rongbin Hu, Hengfu Yin, Jerry Jenkins, Shengqiang Shu, Haibao Tang, Degao Liu, Deborah A Weighill, Won Cheol Yim, Jungmin Ha, Karolina Heyduk, David M Goodstein, Hao-Bo Guo, Robert C Moseley, Elisabeth Fitzek, Sara Jawdy, Zhihao Zhang, Meng Xie, James Hartwell, Jane Grimwood, Ritesh Mewalal, Juan D Beltrán, Susanna F Boxall, Louisa V Dever, Kaitlin J Palla, Rebecca Albion, Travis Garcia, Jesse A Mayer, Sung Don Lim, Ching Man Wai, Paul Peluso, Robert Van Buren, Henrique Cestari De Paoli, Anne M Borland, Hong Guo, Jin-Gui Chen, Wellington Muchero, Yanbin Yin, Daniel A Jacobson, Timothy J Tschaplinski, Robert L Hettich, Ray Ming, Klaus Winter, James H Leebens-Mack, J Andrew C Smith, John C Cushman, Jeremy Schmutz, Gerald A Tuskan
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism. Nature communications 8 (1) (2017)
Yongil Yang, Jessy Labbé, Wellington Muchero, Xiaohan Yang, Sara S Jawdy, Megan Kennedy, Jenifer Johnson, Avinash Sreedasyam, Jeremy Schmutz, Gerald A Tuskan, Jin-Gui Chen
Genome-wide analysis of lectin receptor-like kinases in Populus. BMC genomics 17 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jin-Gui Chen