Steven Henikoff (Steve Henikoff)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 51

Top Venues

bioRxiv : the preprint server for biology

eLife

Genome biology

Nature communications

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Harvard University

United States

PHD :: Biochemistry and Molecular Biology

University of Chicago

United States

BSC

Publications

Steven Henikoff, Jorja G Henikoff, Ronald M Paranal, Jacob E Greene, Ye Zheng, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland, Kami Ahmad
Direct measurement of RNA Polymerase II hypertranscription in cancer FFPE samples. bioRxiv : the preprint server for biology (2024)
Steven Henikoff, Jorja G Henikoff, Ronald M Paranal, Jacob E Greene, Ye Zheng, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland, Kami Ahmad
Direct measurement of RNA Polymerase II hypertranscription in cancer FFPE samples. bioRxiv : the preprint server for biology (2024)
Steven Henikoff, Jorja G Henikoff, Ronald M Paranal, Jacob E Greene, Ye Zheng, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland, Kami Ahmad
RNA Polymerase II hypertranscription in cancer FFPE samples. bioRxiv : the preprint server for biology (2024)
Steven Henikoff, Jorja G Henikoff, Ronald M Paranal, Jacob E Greene, Ye Zheng, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland, Kami Ahmad
RNA Polymerase II hypertranscription in cancer FFPE samples. bioRxiv : the preprint server for biology (2024)
Steven Henikoff, Jorja G Henikoff, Ronald M Paranal, Jacob E Greene, Ye Zheng, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland, Kami Ahmad
RNA Polymerase II hypertranscription in cancer FFPE samples. bioRxiv : the preprint server for biology (2024)
Steven Henikoff, Jorja G Henikoff, Ronald M Paranal, Jacob E Greene, Ye Zheng, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland, Kami Ahmad
RNA Polymerase II hypertranscription in cancer FFPE samples. bioRxiv : the preprint server for biology (2024)
Steven Henikoff, Jorja G Henikoff, Ronald M Paranal, Jacob E Greene, Ye Zheng, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland, Kami Ahmad
RNA Polymerase II hypertranscription in cancer FFPE samples. bioRxiv : the preprint server for biology (2024)
Soyeon Showman, Paul B Talbert, Yiling Xu, Richard O Adeyemi, Steven Henikoff
Expansion of human centromeric arrays in cells undergoing break-induced replication. bioRxiv : the preprint server for biology (2023)
Derek H Janssens, Jacob E Greene, Steven J Wu, Christine A Codomo, Samuel S Minot, Scott N Furlan, Kami Ahmad, Steven Henikoff
Scalable single-cell profiling of chromatin modifications with sciCUT&Tag. Nature protocols (2023)
Matthew Wooten, Brittany Takushi, Kami Ahmad, Steven Henikoff
Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters. bioRxiv : the preprint server for biology (2023)
Sandipan Brahma, Steven Henikoff
RNA Polymerase II, the BAF remodeler and transcription factors synergize to evict nucleosomes. bioRxiv : the preprint server for biology (2023)
Derek H Janssens, Melodie Duran, Dominik J Otto, Danielle Kirkey, Joanna S Yi, Soheil Meshinchi, Jay F Sarthy, Kami Ahmad, Steven Henikoff
KMT2A oncoproteins induce epigenetic resistance to targeted therapies. bioRxiv : the preprint server for biology (2023)
Matthew Wooten, Brittany Takushi, Kami Ahmad, Steven Henikoff
Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters. Science advances 9 (24) (2023)
Sandipan Brahma, Steven Henikoff
The BAF chromatin remodeler synergizes with RNA polymerase II and transcription factors to evict nucleosomes. Nature genetics (2023)
Sandipan Brahma, Steven Henikoff
RNA Polymerase II, the BAF remodeler and transcription factors synergize to evict nucleosomes. bioRxiv : the preprint server for biology (2023)
James Anderson, Steven Henikoff, Kami Ahmad
Chromosome-specific maturation of the epigenome in the Drosophila male germline. bioRxiv : the preprint server for biology (2023)
Matthew Wooten, Brittany Takushi, Kami Ahmad, Steven Henikoff
Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters. bioRxiv : the preprint server for biology (2023)
Steven Henikoff, Jorja G Henikoff, Kami Ahmad, Ronald M Paranal, Derek H Janssens, Zachary R Russell, Frank Szulzewsky, Sita Kugel, Eric C Holland
Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag. Nature communications 14 (1) (2023)
James T Anderson, Steven Henikoff, Kami Ahmad
Chromosome-specific maturation of the epigenome in the Drosophila male germline. eLife 12 (2023)
Matthew Wooten, Brittany Takushi, Kami Ahmad, Steven Henikoff
Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters. bioRxiv : the preprint server for biology (2023)
Paul B Talbert, Steven Henikoff
The genetics and epigenetics of satellite centromeres. Genome research 32 (4) (2022)
Michael P Meers, Geneva Llagas, Derek H Janssens, Christine A Codomo, Steven Henikoff
Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag. Nature biotechnology (2022)
Steven Henikoff, Kami Ahmad
In situ tools for chromatin structural epigenomics. Protein science : a publication of the Protein Society 31 (11) (2022)
Navonil DeSarkar, Robert D Patton, Anna-Lisa Doebley, Brian Hanratty, Mohamed Adil, Adam J Kreitzman, Jay F Sarthy, Minjeong Ko, Sandipan Brahma, Michael P Meers, Derek H Janssens, Lisa S Ang, Ilsa M Coleman, Arnab Bose, Ruth F Dumpit, Jared M Lucas, Talina A Nunez, Holly M Nguyen, Heather M McClure, Colin C Pritchard, Michael Thomas Schweizer, Colm Morrissey, Atish D Choudhury, Sylvan C Baca, Jacob E Berchuck, Matthew L Freedman, Kami Ahmad, Michael C Haffner, Robert B Montgomery, Eva Corey, Steven Henikoff, Peter S Nelson, Gavin Ha
Nucleosome patterns in circulating tumor DNA reveal transcriptional regulation of advanced prostate cancer phenotypes. Cancer discovery (2022)
Nadiya Khyzha, Steven Henikoff, Kami Ahmad
Profiling RNA at chromatin targets in situ by antibody-targeted tagmentation. Nature methods 19 (11) (2022)
Paul B Talbert, Karim-Jean Armache, Steven Henikoff
Viral histones: pickpocket's prize or primordial progenitor? Epigenetics & chromatin 15 (1) (2022)
H Nayanga Thirimanne, Feinan Wu, Derek H Janssens, Jherek Swanger, Ahmed Diab, Heather M Feldman, Robert A Amezquita, Raphael Gottardo, Patrick J Paddison, Steven Henikoff, Bruce E Clurman
Global and context-specific transcriptional consequences of oncogenic Fbw7 mutations. eLife 11 (2022)
Derek H Janssens, Dominik J Otto, Michael P Meers, Manu Setty, Kami Ahmad, Steven Henikoff
CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells. Genome biology 23 (1) (2022)
Paul B Talbert, Steven Henikoff
Remodeller-variant tag team slams transposons. Nature cell biology 23 (4) (2021)
Derek H Janssens, Michael P Meers, Steven J Wu, Ekaterina Babaeva, Soheil Meshinchi, Jay F Sarthy, Kami Ahmad, Steven Henikoff
Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia. Nature genetics 53 (11) (2021)
Steven J Wu, Scott N Furlan, Anca B Mihalas, Hatice S Kaya-Okur, Abdullah H Feroze, Samuel N Emerson, Ye Zheng, Kalee Carson, Patrick J Cimino, C Dirk Keene, Jay F Sarthy, Raphaël Gottardo, Kami Ahmad, Steven Henikoff, Anoop P Patel
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression. Nature biotechnology 39 (7) (2021)
Guo-Liang Chew, Marie Bleakley, Robert K Bradley, Harmit S Malik, Steven Henikoff, Antoine Molaro, Jay F Sarthy
Short H2A histone variants are expressed in cancer. Nature communications 12 (1) (2021)
Paul B Talbert, Steven Henikoff
Histone variants at a glance. Journal of cell science 134 (6) (2021)
Kami Ahmad, Steven Henikoff
The H3.3K27M oncohistone antagonizes reprogramming in Drosophila. PLoS genetics 17 (7) (2021)
Marco Igor Valencia-Sánchez, Stephen Abini-Agbomson, Miao Wang, Rachel Lee, Nikita Vasilyev, Jenny Zhang, Pablo De Ioannes, Bernard La Scola, Paul B Talbert, Steven Henikoff, Evgeny Nudler, Albert J Erives, Karim-Jean Armache
The structure of a virus-encoded nucleosome. Nature structural & molecular biology 28 (5) (2021)
Daniel A Bartlett, Vishnu Dileep, Tetsuya Handa, Yasuyuki Ohkawa, Hitoshi Kurumizaka, Steven Henikoff, David M Gilbert
High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq). The Journal of cell biology 220 (12) (2021)
Hatice S Kaya-Okur, Derek H Janssens, Jorja G Henikoff, Kami Ahmad, Steven Henikoff
Efficient low-cost chromatin profiling with CUT&Tag. Nature protocols 15 (10) (2020)
Steven Henikoff, Jorja G Henikoff, Hatice S Kaya-Okur, Kami Ahmad
Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation. eLife 9 (2020)
He Fang, Giancarlo Bonora, Jordan P Lewandowski, Jitendra Thakur, Galina N Filippova, Steven Henikoff, Jay Shendure, Zhijun Duan, John L Rinn, Xinxian Deng, William Stafford Noble, Christine M Disteche
Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome. Nature communications 11 (1) (2020)
Antoine Molaro, Anna J Wood, Derek Janssens, Selina M Kindelay, Michael T Eickbush, Steven Wu, Priti Singh, Charles H Muller, Steven Henikoff, Harmit Singh Malik
Biparental contributions of the H2A.B histone variant control embryonic development in mice. PLoS biology 18 (12) (2020)
Jay F Sarthy, Michael P Meers, Derek H Janssens, Jorja G Henikoff, Heather Feldman, Patrick J Paddison, Christina M Lockwood, Nicholas A Vitanza, James M Olson, Kami Ahmad, Steven Henikoff
Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones. eLife 9 (2020)
Michael P Meers, Dan Tenenbaum, Steven Henikoff
Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling. Epigenetics & chromatin 12 (1) (2019)
Steven Henikoff, Kami Ahmad
Nucleosomes remember where they were. Proceedings of the National Academy of Sciences of the United States of America 116 (41) (2019)
Paul B Talbert, Michael P Meers, Steven Henikoff
Old cogs, new tricks: the evolution of gene expression in a chromatin context. Nature reviews. Genetics 20 (5) (2019)
Răzvan V Chereji, Terri D Bryson, Steven Henikoff
Quantitative MNase-seq accurately maps nucleosome occupancy levels. Genome biology 20 (1) (2019)
Michael P Meers, Terri D Bryson, Jorja G Henikoff, Steven Henikoff
Improved CUT&RUN chromatin profiling tools. eLife 8 (2019)
Steven Henikoff, George M Church
Simultaneous Discovery of Cell-Free DNA and the Nucleosome Ladder. Genetics 209 (1) (2018)
Răzvan V Chereji, Srinivas Ramachandran, Terri D Bryson, Steven Henikoff
Precise genome-wide mapping of single nucleosomes and linkers in vivo. Genome biology 19 (1) (2018)
Jitendra Thakur, Steven Henikoff
Unexpected conformational variations of the human centromeric chromatin complex. Genes & development 32 (1) (2018)
Paul B Talbert, Sivakanthan Kasinathan, Steven Henikoff
Simple and Complex Centromeric Satellites in Drosophila Sibling Species. Genetics 208 (3) (2018)
Peter J Skene, Steven Henikoff
An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites. eLife 6 (2017)

Steven Henikoff.css-eqlu8i{font-size:small;padding-left:4px;} (Steve Henikoff)

Publication Activity (10 Years)

Top Topics

Top Venues

Steven Henikoff (Steve Henikoff)