John L Rinn (John Rinn)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Venues

Nature communications

RNA (New York, N.Y.)

eLife

bioRxiv : the preprint server for biology

University of Colorado Boulder

Yale University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Colorado Boulder Aug 01 2017

United States

Leslie Orgel Professor of RNA Science :: Biochemistry

Harvard University Jun 02 2015 - Aug 01 2017

United States

Professor :: Stem Cell and Regenerative Biology

Harvard University Jan 01 2008 - Jun 01 2015

United States

Assistant/Associate Professor :: Stem Cell and Regenerative Biology

Stanford University Jun 01 2004 - Dec 31 2007

United States

Damon Runyon Postdoctoral Fellow :: Dermatology

Education History

Yale University Sep 01 1999 - May 01 2004

United States

PHD :: Molecular Biophysics and Biochemistry

University of Minnesota Duluth Sep 01 1995 - May 01 1999

United States

BSC :: Chemistry

Publications

A M Whited, Irwin Jungreis, Jeffre Allen, Christina Cleveland, Jonathan M Mudge, Manolis Kellis, John L Rinn, Loren E Hough
Biophysical characterization of high-confidence, small human proteins. bioRxiv : the preprint server for biology (2024)
Christian Much, Erika L Lasda, Isabela T Pereira, Tenaya K Vallery, Daniel Ramirez, Jordan P Lewandowski, Robin D Dowell, Michael J Smallegan, John L Rinn
The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation. Nature communications 15 (1) (2024)
Christian Much, Erika L Lasda, Isabela T Pereira, Tenaya K Vallery, Daniel Ramirez, Jordan P Lewandowski, Robin D Dowell, Michael J Smallegan, John L Rinn
The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation. Nature communications 15 (1) (2024)
A M Whited, Irwin Jungreis, Jeffre Allen, Christina L Cleveland, Jonathan M Mudge, Manolis Kellis, John L Rinn, Loren E Hough
Biophysical characterization of high-confidence, small human proteins. bioRxiv : the preprint server for biology (2024)
Christian Much, Erika L Lasda, Isabela T Pereira, Tenaya K Vallery, Daniel Ramirez, Jordan P Lewandowski, Robin D Dowell, Michael J Smallegan, John L Rinn
The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation. Nature communications 15 (1) (2024)
A M Whited, Irwin Jungreis, Jeffre Allen, Christina L Cleveland, Jonathan M Mudge, Manolis Kellis, John L Rinn, Loren E Hough
Biophysical characterization of high-confidence, small human proteins. bioRxiv : the preprint server for biology (2024)
Christian Much, Erika L Lasda, Isabela T Pereira, Tenaya K Vallery, Daniel Ramirez, Jordan P Lewandowski, Robin D Dowell, Michael J Smallegan, John L Rinn
The temporal dynamics of lncRNA Firre-mediated epigenetic and transcriptional regulation. Nature communications 15 (1) (2024)
A M Whited, Irwin Jungreis, Jeffre Allen, Christina L Cleveland, Jonathan M Mudge, Manolis Kellis, John L Rinn, Loren E Hough
Biophysical characterization of high-confidence, small human proteins. bioRxiv : the preprint server for biology (2024)
Alexandro Landshammer, Adriano Bolondi, Helene Kretzmer, Christian Much, René Buschow, Alina Rose, Hua-Jun Wu, Sebastian D Mackowiak, Bjoern Braendl, Pay Giesselmann, Rosaria Tornisiello, Krishna Mohan Parsi, Jack Huey, Thorsten Mielke, David Meierhofer, René Maehr, Denes Hnisz, Franziska Michor, John L Rinn, Alexander Meissner
T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation. eLife 12 (2023)
Luisa Santus, Maria Sopena-Rios, Raquel García-Pérez, Aaron E Lin, Gordon C Adams, Kayla G Barnes, Katherine J Siddle, Shirlee Wohl, Ferran Reverter, John L Rinn, Richard S Bennett, Lisa E Hensley, Pardis C Sabeti, Marta Melé
Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques. Nature communications 14 (1) (2023)
Luisa Santus, Maria Sopena-Rios, Raquel García-Pérez, Aaron E Lin, Gordon C Adams, Kayla G Barnes, Katherine J Siddle, Shirlee Wohl, Ferran Reverter, John L Rinn, Richard S Bennett, Lisa E Hensley, Pardis C Sabeti, Marta Melé
Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques. Nature communications 14 (1) (2023)
Alexandro Landshammer, Adriano Bolondi, Helene Kretzmer, Christian Much, René Buschow, Alina Rose, Hua-Jun Wu, Sebastian D Mackowiak, Bjoern Braendl, Pay Giesselmann, Rosaria Tornisiello, Krishna Mohan Parsi, Jack Huey, Thorsten Mielke, David Meierhofer, René Maehr, Denes Hnisz, Franziska Michor, John L Rinn, Alexander Meissner
T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation. eLife 12 (2023)
Alexandro Landshammer, Adriano Bolondi, Helene Kretzmer, Christian Much, René Buschow, Alina Rose, Hua-Jun Wu, Sebastian D Mackowiak, Bjoern Braendl, Pay Giesselmann, Rosaria Tornisiello, Krishna Mohan Parsi, Jack Huey, Thorsten Mielke, David Meierhofer, René Maehr, Denes Hnisz, Franziska Michor, John L Rinn, Alexander Meissner
T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation. eLife 12 (2023)
Luisa Santus, Maria Sopena-Rios, Raquel García-Pérez, Aaron E Lin, Gordon C Adams, Kayla G Barnes, Katherine J Siddle, Shirlee Wohl, Ferran Reverter, John L Rinn, Richard S Bennett, Lisa E Hensley, Pardis C Sabeti, Marta Melé
Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques. Nature communications 14 (1) (2023)
Alexandro Landshammer, Adriano Bolondi, Helene Kretzmer, Christian Much, René Buschow, Alina Rose, Hua-Jun Wu, Sebastian D Mackowiak, Bjoern Braendl, Pay Giesselmann, Rosaria Tornisiello, Krishna Mohan Parsi, Jack Huey, Thorsten Mielke, David Meierhofer, René Maehr, Denes Hnisz, Franziska Michor, John L Rinn, Alexander Meissner
T-REX17 is a transiently expressed non-coding RNA essential for human endoderm formation. eLife 12 (2023)
Yicheng Long, Taeyoung Hwang, Anne R Gooding, Karen J Goodrich, Tenaya K Vallery, John L Rinn, Thomas R Cech
Evaluation of the RNA-dependence of PRC2 binding to chromatin in human pluripotent stem cells. bioRxiv : the preprint server for biology (2023)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Thomas A Carter, Manvendra Singh, Gabrijela Dumbović, Jason D Chobirko, John L Rinn, Cédric Feschotte
Mosaic cis-regulatory evolution drives transcriptional partitioning of HERVH endogenous retrovirus in the human embryo. eLife 11 (2022)
Christian Much, Michael J Smallegan, Taeyoung Hwang, Skylar D Hanson, Gabrijela Dumbović, John L Rinn
Evolutionary divergence of Firre localization and expression. RNA (New York, N.Y.) 28 (6) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Linnea I Jansson-Fritzberg, Camila I Sousa, Michael J Smallegan, Jessica J Song, Anne R Gooding, Vignesh Kasinath, John L Rinn, Thomas R Cech
DNMT1 inhibition by pUG-fold quadruplex RNA. RNA (New York, N.Y.) 29 (3) (2022)
Christian C D Harman, Will Bailis, Jun Zhao, Louisa Hill, Rihao Qu, Ruaidhrí P Jackson, Justin A Shyer, Holly R Steach, Yuval Kluger, Christopher A Walsh, John L Rinn, Adam Williams, Jorge Henao-Mejia, Richard A Flavell
An in vivo screen of noncoding loci reveals that Daedalus is a gatekeeper of an Ikaros-dependent checkpoint during haematopoiesis. Proceedings of the National Academy of Sciences of the United States of America 118 (3) (2021)
Gabrijela Dumbović, Ulrich Braunschweig, Heera K Langner, Michael J Smallegan, Josep Biayna, Evan P Hass, Katarzyna Jastrzebska, Benjamin J Blencowe, Thomas R Cech, Marvin H Caruthers, John L Rinn
Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention. Nature communications 12 (1) (2021)
Daniel Andergassen, John L Rinn
From genotype to phenotype: genetics of mammalian long non-coding RNAs in vivo. Nature reviews. Genetics (2021)
Gabrijela Dumbović, Ulrich Braunschweig, Heera K Langner, Michael J Smallegan, Josep Biayna, Evan P Hass, Katarzyna Jastrzebska, Benjamin J Blencowe, Thomas R Cech, Marvin H Caruthers, John L Rinn
Publisher Correction: Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention. Nature communications 12 (1) (2021)
He Fang, Giancarlo Bonora, Jordan P Lewandowski, Jitendra Thakur, Galina N Filippova, Steven Henikoff, Jay Shendure, Zhijun Duan, John L Rinn, Xinxian Deng, William Stafford Noble, Christine M Disteche
Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome. Nature communications 11 (1) (2020)
Christophe Bourges, Abigail F Groff, Oliver S Burren, Chiara Gerhardinger, Kaia Mattioli, Anna Hutchinson, Theodore Hu, Tanmay Anand, Madeline W Epping, Chris Wallace, Kenneth Gc Smith, John L Rinn, James C Lee
Resolving mechanisms of immune-mediated disease in primary CD4 T cells. EMBO molecular medicine 12 (5) (2020)
null null, Jill E Moore, Michael J Purcaro, Henry E Pratt, Charles B Epstein, Noam Shoresh, Jessika Adrian, Trupti Kawli, Carrie A Davis, Alexander Dobin, Rajinder Kaul, Jessica Halow, Eric L Van Nostrand, Peter Freese, David U Gorkin, Yin Shen, Yupeng He, Mark Mackiewicz, Florencia Pauli-Behn, Brian A Williams, Ali Mortazavi, Cheryl A Keller, Xiao-Ou Zhang, Shaimae I Elhajjajy, Jack Huey, Diane E Dickel, Valentina Snetkova, Xintao Wei, Xiaofeng Wang, Juan Carlos Rivera-Mulia, Joel Rozowsky, Jing Zhang, Surya B Chhetri, Jialing Zhang, Alec Victorsen, Kevin P White, Axel Visel, Gene W Yeo, Christopher B Burge, Eric Lécuyer, David M Gilbert, Job Dekker, John L Rinn, Eric M Mendenhall, Joseph R Ecker, Manolis Kellis, Robert J Klein, William S Noble, Anshul Kundaje, Roderic Guigó, Peggy J Farnham, J Michael Cherry, Richard M Myers, Bing Ren, Brenton R Graveley, Mark B Gerstein, Len A Pennacchio, Michael Paul Snyder, Bradley E Bernstein, Barbara Wold, Ross Cameron Hardison, Thomas R Gingeras, John A Stamatoyannopoulos, Nishigandha Phalke
Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature 583 (7818) (2020)
Yicheng Long, Taeyoung Hwang, Anne R Gooding, Karen J Goodrich, John L Rinn, Thomas R Cech
RNA is essential for PRC2 chromatin occupancy and function in human pluripotent stem cells. Nature genetics 52 (9) (2020)
Zachariah E Holmes, Desmond J Hamilton, Taeyoung Hwang, Nicholas V Parsonnet, John L Rinn, Deborah S Wuttke, Robert T Batey
The Sox2 transcription factor binds RNA. Nature communications 11 (1) (2020)
Jordan P Lewandowski, James C Lee, Taeyoung Hwang, Hongjae Sunwoo, Jill M Goldstein, Abigail F Groff, Nydia P Chang, William Mallard, Adam Williams, Jorge Henao-Meija, Richard A Flavell, Jeannie T Lee, Chiara Gerhardinger, Amy J Wagers, John L Rinn
The Firre locus produces a trans-acting RNA molecule that functions in hematopoiesis. Nature communications 10 (1) (2019)
Michael J Smallegan, John L Rinn
Linking long noncoding RNA to drug resistance. Proceedings of the National Academy of Sciences of the United States of America 116 (44) (2019)
Daniel Andergassen, Zachary D Smith, Jordan P Lewandowski, Chiara Gerhardinger, Alexander Meissner, John L Rinn
In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation. eLife 8 (2019)
A Rasim Barutcu, Benjamin J Blencowe, John L Rinn
Differential contribution of steady-state RNA and active transcription in chromatin organization. EMBO reports 20 (10) (2019)
Teisha J Rowland, Gabrijela Dumbović, Evan P Hass, John L Rinn, Thomas R Cech
Single-cell imaging reveals unexpected heterogeneity of telomerase reverse transcriptase expression across human cancer cell lines. Proceedings of the National Academy of Sciences of the United States of America 116 (37) (2019)
A Rasim Barutcu, Philipp G Maass, Jordan P Lewandowski, Catherine L Weiner, John L Rinn
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus. Nature communications 9 (1) (2018)
Chinmay J Shukla, Alexandra L McCorkindale, Chiara Gerhardinger, Keegan D Korthauer, Moran N Cabili, David M Shechner, Rafael A Irizarry, Philipp G Maass, John L Rinn
High-throughput identification of RNA nuclear enrichment sequences. The EMBO journal 37 (6) (2018)
Philipp G Maass, A Rasim Barutcu, David M Shechner, Catherine L Weiner, Marta Melé, John L Rinn
Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging (SNP-CLING). Nature structural & molecular biology 25 (2) (2018)
Philipp G Maass, Anja Weise, Katharina Rittscher, Julia Lichtenwald, A Rasim Barutcu, Thomas Liehr, Atakan Aydin, Yvette Wefeld-Neuenfeld, Laura Pölsler, Sigrid Tinschert, John L Rinn, Friedrich C Luft, Sylvia Bähring
Reorganization of inter-chromosomal interactions in the 2q37-deletion syndrome. The EMBO journal 37 (15) (2018)
Pornchai Kaewsapsak, David Michael Shechner, William Mallard, John L Rinn, Alice Y Ting
Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking. eLife 6 (2017)

John L Rinn.css-eqlu8i{font-size:small;padding-left:4px;} (John Rinn)

Publication Activity (10 Years)

Top Topics

Top Venues

John L Rinn (John Rinn)