Christopher B Burge

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Topics

Binding Protein

Breast Cancer Cells

Top Venues

Nature communications

Science advances

This page only lists publications with an associated author ORCID identifier.

Publications

Kavi Gupta, Chenxi Yang, Kayla McCue, Osbert Bastani, Phillip A Sharp, Christopher B Burge, Armando Solar-Lezama
Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing. Genome biology 25 (1) (2024)
Scott D Findlay, Lindsay Romo, Christopher B Burge
Quantifying negative selection in human 3' UTRs uncovers constrained targets of RNA-binding proteins. Nature communications 15 (1) (2024)
Kavi Gupta, Chenxi Yang, Kayla McCue, Osbert Bastani, Phillip A Sharp, Christopher B Burge, Armando Solar-Lezama
Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing. Genome biology 25 (1) (2024)
Kavi Gupta, Chenxi Yang, Kayla McCue, Osbert Bastani, Phillip A Sharp, Christopher B Burge, Armando Solar-Lezama
Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing. Genome biology 25 (1) (2024)
Kavi Gupta, Chenxi Yang, Kayla McCue, Osbert Bastani, Phillip A Sharp, Christopher B Burge, Armando Solar-Lezama
Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing. Genome biology 25 (1) (2024)
Scott D Findlay, Lindsay Romo, Christopher B Burge
Quantifying negative selection in human 3' UTRs uncovers constrained targets of RNA-binding proteins. Nature communications 15 (1) (2024)
Scott D Findlay, Lindsay Romo, Christopher B Burge
Quantifying negative selection in human 3' UTRs uncovers constrained targets of RNA-binding proteins. Nature communications 15 (1) (2024)
Kavi Gupta, Chenxi Yang, Kayla McCue, Osbert Bastani, Phillip A Sharp, Christopher B Burge, Armando Solar-Lezama
Improved modeling of RNA-binding protein motifs in an interpretable neural model of RNA splicing. Genome biology 25 (1) (2024)
Scott D Findlay, Lindsay Romo, Christopher B Burge
Quantifying negative selection in human 3' UTRs uncovers constrained targets of RNA-binding proteins. Nature communications 15 (1) (2024)
Kayla McCue, Christopher B Burge
An interpretable model of pre-mRNA splicing for animal and plant genes. Science advances 10 (19) (2024)
Kayla McCue, Christopher B Burge
An interpretable model of pre-mRNA splicing for animal and plant genes. Science advances 10 (19) (2024)
Carlos G Vanoye, Tatiana V Abramova, Jean-Marc DeKeyser, Nora F Ghabra, Madeleine J Oudin, Christopher B Burge, Ingo Helbig, Christopher H Thompson, Alfred L George
Molecular and Cellular Context Influences SCN8A Variant Function. bioRxiv : the preprint server for biology (2023)
Ana Fiszbein, Michael McGurk, Ezequiel Hernán Calvo Roitberg, GyeungYun Kim, Christopher B Burge, Athma A Pai
Widespread occurrence of hybrid internal-terminal exons in human transcriptomes. Science advances 8 (3) (2022)
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei, Rui Xiao, Steven M Blue, Jia-Yu Chen, Neal A L Cody, Daniel Dominguez, Sara Olson, Balaji Sundararaman, Lijun Zhan, Cassandra Bazile, Louis Philip Benoit Bouvrette, Julie Bergalet, Michael O Duff, Keri E Garcia, Chelsea Gelboin-Burkhart, Myles Hochman, Nicole J Lambert, Hairi Li, Michael P McGurk, Thai B Nguyen, Tsultrim Palden, Ines Rabano, Shashank Sathe, Rebecca Stanton, Amanda Su, Ruth Wang, Brian A Yee, Bing Zhou, Ashley L Louie, Stefan Aigner, Xiang-Dong Fu, Eric Lécuyer, Christopher B Burge, Brenton R Graveley, Gene W Yeo
A large-scale binding and functional map of human RNA-binding proteins. Nature 583 (7818) (2020)
Bridget E Begg, Marvin Jens, Peter Y Wang, Christine M Minor, Christopher B Burge
Concentration-dependent splicing is enabled by Rbfox motifs of intermediate affinity. Nature structural & molecular biology 27 (10) (2020)
null null, Jill E Moore, Michael J Purcaro, Henry E Pratt, Charles B Epstein, Noam Shoresh, Jessika Adrian, Trupti Kawli, Carrie A Davis, Alexander Dobin, Rajinder Kaul, Jessica Halow, Eric L Van Nostrand, Peter Freese, David U Gorkin, Yin Shen, Yupeng He, Mark Mackiewicz, Florencia Pauli-Behn, Brian A Williams, Ali Mortazavi, Cheryl A Keller, Xiao-Ou Zhang, Shaimae I Elhajjajy, Jack Huey, Diane E Dickel, Valentina Snetkova, Xintao Wei, Xiaofeng Wang, Juan Carlos Rivera-Mulia, Joel Rozowsky, Jing Zhang, Surya B Chhetri, Jialing Zhang, Alec Victorsen, Kevin P White, Axel Visel, Gene W Yeo, Christopher B Burge, Eric Lécuyer, David M Gilbert, Job Dekker, John L Rinn, Eric M Mendenhall, Joseph R Ecker, Manolis Kellis, Robert J Klein, William S Noble, Anshul Kundaje, Roderic Guigó, Peggy J Farnham, J Michael Cherry, Richard M Myers, Bing Ren, Brenton R Graveley, Mark B Gerstein, Len A Pennacchio, Michael Paul Snyder, Bradley E Bernstein, Barbara Wold, Ross Cameron Hardison, Thomas R Gingeras, John A Stamatoyannopoulos, Nishigandha Phalke
Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature 583 (7818) (2020)
Nir Gonen, Niv Sabath, Christopher B Burge, Reut Shalgi
Widespread PERK-dependent repression of ER targets in response to ER stress. Scientific reports 9 (1) (2019)
Ei-Wen Yang, Jae Hoon Bahn, Esther Yun-Hua Hsiao, Boon Xin Tan, Yiwei Sun, Ting Fu, Bo Zhou, Eric L Van Nostrand, Gabriel A Pratt, Peter Freese, Xintao Wei, Giovanni Quinones-Valdez, Alexander E Urban, Brenton R Graveley, Christopher B Burge, Gene W Yeo, Xinshu Grace Xiao
Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA. Nature communications 10 (1) (2019)
Nazanin Rohani, Liangliang Hao, Maria S Alexis, Brian A Joughin, Konstantin Krismer, Mira N Moufarrej, Anthony R Soltis, Douglas A Lauffenburger, Micheal B Yaffe, Christopher B Burge, Sangeeta N Bhatia, Frank B Gertler
Acidification of Tumor at Stromal Boundaries Drives Transcriptome Alterations Associated with Aggressive Phenotypes. Cancer research 79 (8) (2019)
Cornelia Kröger, Alexander Afeyan, Jasmin Mraz, Elinor Ng Eaton, Ferenc Reinhardt, Yevgenia L Khodor, Prathapan Thiru, Brian Bierie, Xin Ye, Christopher B Burge, Robert A Weinberg
Acquisition of a hybrid E/M state is essential for tumorigenicity of basal breast cancer cells. Proceedings of the National Academy of Sciences of the United States of America 116 (15) (2019)
Jennifer M Cherone, Vjola Jorgji, Christopher B Burge
Cotargeting among microRNAs in the brain. Genome research 29 (11) (2019)
Patrick A Murphy, Vincent L Butty, Paul L Boutz, Shahinoor Begum, Amy L Kimble, Phillip A Sharp, Christopher B Burge, Richard O Hynes
Alternative RNA splicing in the endothelium mediated in part by Rbfox2 regulates the arterial response to low flow. eLife 7 (2018)
Athma A Pai, Telmo Henriques, Kayla McCue, Adam Burkholder, Karen Adelman, Christopher B Burge
The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture. eLife 6 (2017)