Olga V Kalinina

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 16

Top Venues

Nature communications

Nature methods

PLoS computational biology

Bioinformatics (Oxford, England)

Helmholtz Institute for Pharmaceutical Research Saarland

Moscow State University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Helmholtz Institute for Pharmaceutical Research Saarland Jan 01 2019

Germany

Head of research group :: Wirkstoff-Bioinformatik

Max Planck Institute for Informatics Jan 09 2011 - Dec 31 2018

Germany

Senior Researcher :: Computational Biology and Applied Algorithmics

University of Heidelberg Bioquant Nov 01 2009 - Aug 31 2011

Germany

Post-Doc

European Molecular Biology Laboratory Nov 01 2007 - Oct 31 2009

Germany

Post-Doc :: Structural and Computational Biology

Education History

Moscow State University Nov 01 2003 - Oct 31 2006

Russia

PHD :: Bioengineering and Bioinformatics

Moscow State University Sep 01 1998 - Jun 25 2003

Russia

MSC :: Mathematics and Mechanics

Publications

Judith Bernett, David B Blumenthal, Dominik G Grimm, Florian Haselbeck, Roman Joeres, Olga V Kalinina, Markus List
Guiding questions to avoid data leakage in biological machine learning applications. Nature methods 21 (8) (2024)
Chengzhang Fu, Yunkun Liu, Christine Walt, Sari Rasheed, Chantal D Bader, Peer Lukat, Markus Neuber, F P Jake Haeckl, Wulf Blankenfeldt, Olga V Kalinina, Daniel Krug
Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nature communications 15 (1) (2024)
Chengzhang Fu, Yunkun Liu, Christine Walt, Sari Rasheed, Chantal D Bader, Peer Lukat, Markus Neuber, F P Jake Haeckl, Wulf Blankenfeldt, Olga V Kalinina, Daniel Krug
Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nature communications 15 (1) (2024)
Chengzhang Fu, Yunkun Liu, Christine Walt, Sari Rasheed, Chantal D Bader, Peer Lukat, Markus Neuber, F P Jake Haeckl, Wulf Blankenfeldt, Olga V Kalinina, Daniel Krug
Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins. Nature communications 15 (1) (2024)
Judith Bernett, David B Blumenthal, Dominik G Grimm, Florian Haselbeck, Roman Joeres, Olga V Kalinina, Markus List
Guiding questions to avoid data leakage in biological machine learning applications. Nature methods 21 (8) (2024)
Sanjay K Srikakulam, Sebastian Keller, Fawaz Dabbaghie, Robert Bals, Olga V Kalinina
MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants. Bioinformatics (Oxford, England) 39 (3) (2023)
Fawaz Dabbaghie, Sanjay K Srikakulam, Tobias Marschall, Olga V Kalinina
PanPA: generation and alignment of panproteome graphs. Bioinformatics advances 3 (1) (2023)
Sanjay K Srikakulam, Sebastian Keller, Fawaz Dabbaghie, Robert Bals, Olga V Kalinina
MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants. Bioinformatics (Oxford, England) 39 (3) (2023)
Sebastian Adam, Dazhong Zheng, Andreas Klein, Carsten Volz, William Mullen, Sally L Shirran, Brian O Smith, Olga V Kalinina, Daniel Krug, Jesko Koehnke
Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis. Nature chemistry (2023)
Michael W Mullowney, Katherine R Duncan, Somayah S Elsayed, Neha Garg, Justin Johan Jozias van der Hooft, Nathaniel I Martin, David Meijer, Barbara R Terlouw, Friederike Biermann, Kai Blin, Janani Durairaj, Marina Gorostiola González, Eric J N Helfrich, Florian Huber, Stefan Leopold-Messer, Kohulan Rajan, Tristan de Rond, Jeffrey A van Santen, Maria Sorokina, Marcy J Balunas, Mehdi A Beniddir, Doris A van Bergeijk, Laura M Carroll, Chase M Clark, Djork-Arné Clevert, Chris A Dejong, Chao Du, Scarlet Ferrinho, Francesca Grisoni, Albert Hofstetter, Willem Jespers, Olga V Kalinina, Satria A Kautsar, Hyun Woo Kim, Tiago F Leao, Joleen Masschelein, Evan R Rees, Raphael Reher, Daniel Reker, Philippe Schwaller, Marwin Segler, Michael A Skinnider, Allison S Walker, Egon L Wilighagen, Barbara Zdrazil, Nadine Ziemert, Rebecca J M Goss, Pierre Guyomard, Andrea Volkamer, William H Gerwick, Hyun Uk Kim, Daniel Krug, Gilles P van Wezel, Gerard van Westen, Anna Katharina Herta Hirsch, Roger G Linington, Serina L Robinson, Marnix H Medema
Artificial intelligence for natural product drug discovery. Nature reviews. Drug discovery (2023)
Alexander Gress, Sanjay K Srikakulam, Sebastian Keller, Vasily E Ramensky, Olga V Kalinina
d-StructMAn: Containerized structural annotation on the scale from genetic variants to whole proteomes. GigaScience 11 (2022)
Galya V Klink, Olga V Kalinina, Georgii A Bazykin
Phylogenetic inference of changes in amino acid propensities with single-position resolution. PLoS computational biology 18 (2) (2022)
Aleksei Mironov, Stepan Denisov, Alexander Gress, Olga V Kalinina, Dmitri D Pervouchine
An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. PLoS computational biology 17 (4) (2021)
Sanjay K Srikakulam, Tomas Bastys, Olga V Kalinina
A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistance. Proteins 88 (11) (2020)
Tomas Bastys, Vytautas Gapsys, Hauke Walter, Eva Heger, Nadezhda T Doncheva, Rolf Kaiser, Bert L de Groot, Olga V Kalinina
Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors. Retrovirology 17 (1) (2020)
Elena Knops, Saleta Sierra, Prabhav Kalaghatgi, Eva Heger, Rolf Kaiser, Olga V Kalinina
Epistatic Interactions in NS5A of Hepatitis C Virus Suggest Drug Resistance Mechanisms. Genes 9 (7) (2018)

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Publication Activity (10 Years)

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Olga V Kalinina