Raúl Rabadán (Raul Rabadan)

Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 49

Top Venues

Nature communications

Nature structural & molecular biology

Molecular cancer research : MCR

bioRxiv : the preprint server for biology

Columbia University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Columbia University Sep 01 2008

United States

Professor :: Systems Biology

Publications

Alex Fu, Raúl Rabadán
Understanding variants of unknown significance: the computational frontier. The oncologist 29 (8) (2024)
Xu Hua, Hui Zhou, Hui-Chen Wu, Julia Furnari, Corina P Kotidis, Raúl Rabadán, Jeanine M Genkinger, Jeffrey N Bruce, Peter D Canoll, Regina M Santella, Zhiguo Zhang
Tumor detection by analysis of both symmetric- and hemi-methylation of plasma cell-free DNA. Nature communications 15 (1) (2024)
Alex Fu, Shentong Mo, Alejandro Buendia, Anouchka Laurent, Anqi Shao, Maria Del Mar Alvares-Torres, Tianji Yu, Jimin Tan, Jiayu Su, Romella Sagatelian, Adolfo A Ferrando, Alberto Ciccia, Yanyan Lan, David M Owens, Teresa Palomero, Eric P Xing, Raúl Rabadán
GET: a foundation model of transcription across human cell types. bioRxiv : the preprint server for biology (2024)
Kwang-Soo Kim, Karl Habashy, Andrew Gould, Junfei Zhao, Hinda Najem, Christina Amidei, Ruth Saganty, Víctor A Arrieta, Crismita Dmello, Li Chen, Daniel Y Zhang, Brandyn Castro, Leah Billingham, Daniel Levey, Olivia Huber, Marilyn Marques, David A Savitsky, Benjamin M Morin, Miguel Muzzio, Michael Canney, Craig Horbinski, Peng Zhang, Jason Miska, Surya Padney, Bin Zhang, Raúl Rabadán, Joanna J Phillips, Nicholas Butowski, Amy B Heimberger, Jian Hu, Roger Stupp, Dhan Chand, Catalina Lee-Chang, Adam M Sonabend
Fc-enhanced anti-CTLA-4, anti-PD-1, doxorubicin, and ultrasound-mediated BBB opening: A novel combinatorial immunotherapy regimen for gliomas. Neuro-oncology (2024)
Xu Hua, Hui Zhou, Hui-Chen Wu, Julia Furnari, Corina P Kotidis, Raúl Rabadán, Jeanine M Genkinger, Jeffrey N Bruce, Peter D Canoll, Regina M Santella, Zhiguo Zhang
Tumor detection by analysis of both symmetric- and hemi-methylation of plasma cell-free DNA. Nature communications 15 (1) (2024)
Alex Fu, Shentong Mo, Alejandro Buendia, Anouchka Laurent, Anqi Shao, Maria Del Mar Alvares-Torres, Tianji Yu, Jimin Tan, Jiayu Su, Romella Sagatelian, Adolfo A Ferrando, Alberto Ciccia, Yanyan Lan, David M Owens, Teresa Palomero, Eric P Xing, Raúl Rabadán
GET: a foundation model of transcription across human cell types. bioRxiv : the preprint server for biology (2024)
Alex Fu, Raúl Rabadán
Understanding variants of unknown significance: the computational frontier. The oncologist 29 (8) (2024)
Kausik Regunath, Vitalay Fomin, Zhaoqi Liu, Pingzhang Wang, Mainul Hoque, Bin Tian, Raúl Rabadán, Carol Prives
Systematic Characterization of p53-Regulated Long Noncoding RNAs across Human Cancers Reveals Remarkable Heterogeneity among Different Tumor Types. Molecular cancer research : MCR 22 (6) (2024)
Luis Aparicio, Laura Crowley, John R Christin, Caroline J Laplaca, Hanina Hibshoosh, Raúl Rabadán, Michael M Shen
Meta-analyses of mouse and human prostate single-cell transcriptomes reveal widespread epithelial plasticity in tissue regression, regeneration, and cancer. bioRxiv : the preprint server for biology (2024)
Kausik Regunath, Vitalay Fomin, Zhaoqi Liu, Pingzhang Wang, Mainul Hoque, Bin Tian, Raúl Rabadán, Carol Prives
Systematic Characterization of p53-Regulated Long Noncoding RNAs across Human Cancers Reveals Remarkable Heterogeneity among Different Tumor Types. Molecular cancer research : MCR 22 (6) (2024)
Kausik Regunath, Vitalay Fomin, Pingzhang Wang, Zhaoqi Liu, Mainul Hoque, Bin Tian, Raúl Rabadán, Carol Prives
Systematic characterization of p53-regulated long non-coding RNAs across human cancers reveals remarkable heterogeneity among different tumor types. Molecular cancer research : MCR (2024)
Luis Aparicio, Laura Crowley, John R Christin, Caroline J Laplaca, Hanina Hibshoosh, Raúl Rabadán, Michael M Shen
Meta-analyses of mouse and human prostate single-cell transcriptomes reveal widespread epithelial plasticity in tissue regression, regeneration, and cancer. bioRxiv : the preprint server for biology (2024)
Kausik Regunath, Vitalay Fomin, Zhaoqi Liu, Pingzhang Wang, Mainul Hoque, Bin Tian, Raúl Rabadán, Carol Prives
Systematic Characterization of p53-Regulated Long Noncoding RNAs across Human Cancers Reveals Remarkable Heterogeneity among Different Tumor Types. Molecular cancer research : MCR 22 (6) (2024)
Kausik Regunath, Vitalay Fomin, Zhaoqi Liu, Pingzhang Wang, Mainul Hoque, Bin Tian, Raúl Rabadán, Carol Prives
Systematic Characterization of p53-Regulated Long Noncoding RNAs across Human Cancers Reveals Remarkable Heterogeneity among Different Tumor Types. Molecular cancer research : MCR 22 (6) (2024)
Alex Fu, Shentong Mo, Alejandro Buendia, Anouchka Laurent, Anqi Shao, Maria Del Mar Alvarez-Torres, Tianji Yu, Jimin Tan, Jiayu Su, Romella Sagatelian, Adolfo A Ferrando, Alberto Ciccia, Yanyan Lan, David M Owens, Teresa Palomero, Eric P Xing, Raúl Rabadán
GET: a foundation model of transcription across human cell types. bioRxiv : the preprint server for biology (2024)
Alex Fu, Raúl Rabadán
Understanding variants of unknown significance: the computational frontier. The oncologist (2024)
Xu Hua, Hui Zhou, Hui-Chen Wu, Julia Furnari, Corina P Kotidis, Raúl Rabadán, Jeanine M Genkinger, Jeffrey N Bruce, Peter D Canoll, Regina M Santella, Zhiguo Zhang
Tumor detection by analysis of both symmetric- and hemi-methylation of plasma cell-free DNA. Nature communications 15 (1) (2024)
Kausik Regunath, Vitalay Fomin, Pingzhang Wang, Zhaoqi Liu, Mainul Hoque, Bin Tian, Raúl Rabadán, Carol Prives
Systematic characterization of p53-regulated long non-coding RNAs across human cancers reveals remarkable heterogeneity among different tumor types. Molecular cancer research : MCR (2024)
Kausik Regunath, Vitalay Fomin, Pingzhang Wang, Zhaoqi Liu, Mainul Hoque, Bin Tian, Raúl Rabadán, Carol Prives
Systematic characterization of p53-regulated long non-coding RNAs across human cancers reveals remarkable heterogeneity among different tumor types. Molecular cancer research : MCR (2024)
Crismita Dmello, Junfei Zhao, Li Chen, Andrew Gould, Brandyn Castro, Victor A Arrieta, Daniel Yang Zhang, Kwang-Soo Kim, Deepak Kanojia, Peng Zhang, Jason M Miska, Ragini Yeeravalli, Karl Habashy, Ruth Saganty, Seong Jae Kang, Jawad Fares, Connor Liu, Gavin Dunn, Elizabeth Thomas Bartom, Matthew J Schipma, Patrick D Hsu, Mahmoud S Alghamri, Maciej S Lesniak, Amy B Heimberger, Raúl Rabadán, Catalina Lee-Chang, Adam M Sonabend
Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade. Nature communications 14 (1) (2023)
Crismita Dmello, Junfei Zhao, Li Chen, Andrew Gould, Brandyn Castro, Victor A Arrieta, Daniel Yang Zhang, Kwang-Soo Kim, Deepak Kanojia, Peng Zhang, Jason M Miska, Ragini Yeeravalli, Karl Habashy, Ruth Saganty, Seong Jae Kang, Jawad Fares, Connor Liu, Gavin Dunn, Elizabeth Thomas Bartom, Matthew J Schipma, Patrick D Hsu, Mahmoud S Alghamri, Maciej S Lesniak, Amy B Heimberger, Raúl Rabadán, Catalina Lee-Chang, Adam M Sonabend
Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade. Nature communications 14 (1) (2023)
Luz Jubierre Zapater, Elias Rodriguez-Fos, Merce Planas-Felix, Sara Lewis, Daniel Cameron, Phillip Demarest, Anika Nabila, Junfei Zhao, Paul Bergin, Casie Reed, Makiko Yamada, Nicholas D Socci, Matthew Hayes, Raúl Rabadán, David Torrents, Michael C Kruer, Miklos Toth, Alex Kentsis
A transposase-derived gene required for human brain development. bioRxiv : the preprint server for biology (2023)
Luz Jubierre Zapater, Elias Rodriguez-Fos, Merce Planas-Felix, Sara Lewis, Daniel Cameron, Phillip Demarest, Anika Nabila, Junfei Zhao, Paul Bergin, Casie Reed, Makiko Yamada, Nicholas D Socci, Matthew Hayes, Raúl Rabadán, David Torrents, Michael C Kruer, Miklos Toth, Alex Kentsis
A transposase-derived gene required for human brain development. bioRxiv : the preprint server for biology (2023)
Thomas S Postler, Anqi Wang, Francesco G Brundu, Pingzhang Wang, Zikai Wu, Kelly E Butler, Yenkel Grinberg-Bleyer, Suneeta Krishnareddy, Stephen M Lagana, Anjali Saqi, Andrea Oeckinghaus, Raúl Rabadán, Sankar Ghosh
A pan-cancer analysis implicates human NKIRAS1 as a tumor-suppressor gene. Proceedings of the National Academy of Sciences of the United States of America 120 (46) (2023)
Crismita Dmello, Junfei Zhao, Li Chen, Andrew Gould, Brandyn Castro, Victor A Arrieta, Daniel Yang Zhang, Kwang-Soo Kim, Deepak Kanojia, Peng Zhang, Jason M Miska, Ragini Yeeravalli, Karl Habashy, Ruth Saganty, Seong Jae Kang, Jawad Fares, Connor Liu, Gavin Dunn, Elizabeth Thomas Bartom, Matthew J Schipma, Patrick D Hsu, Mahmoud S Alghamri, Maciej S Lesniak, Amy B Heimberger, Raúl Rabadán, Catalina Lee-Chang, Adam M Sonabend
Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade. Nature communications 14 (1) (2023)
Karen Gomez, Gianluca Schiavoni, Yoonhee Nam, Jean-Baptiste Reynier, Cole Khamnei, Michael Aitken, Giuseppe Palmieri, Antonio Cossu, Arnold Levine, Carel van Noesel, Brunangelo Falini, Laura Pasqualucci, Enrico Tiacci, Raúl Rabadán
Genomic landscape of virus-associated cancers. medRxiv : the preprint server for health sciences (2023)
Demis Menolfi, Brian J Lee, Hanwen Zhang, Wenxia Jiang, Nicole E Bowen, Yunyue Wang, Junfei Zhao, Antony B Holmes, Steven Gershik, Raúl Rabadán, Baek Kim, Shan Zha
ATR kinase supports normal proliferation in the early S phase by preventing replication resource exhaustion. Nature communications 14 (1) (2023)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Author Correction: Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2023)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Yen K Lieu, Zhaoqi Liu, Abdullah M Ali, Xin Wei, Alex Penson, Jian Zhang, Xiuli An, Raúl Rabadán, Azra Raza, James L Manley, Siddhartha Mukherjee
SF3B1 mutant-induced missplicing of MAP3K7 causes anemia in myelodysplastic syndromes. Proceedings of the National Academy of Sciences of the United States of America 119 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology 30 (1) (2022)
Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raúl Rabadán, Job Dekker, Jean Gautier
Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. Nature structural & molecular biology (2022)
Marco Fangazio, Erik Ladewig, Karen Gomez, Laura Garcia-Ibanez, Rahul Kumar, Julie Teruya-Feldstein, Davide Rossi, Ioan Filip, Qiang Pan-Hammarström, Giorgio Inghirami, Renzo L Boldorini, German Ott, Annette M Staiger, Björn Chapuy, Gianluca Gaidano, Govind Bhagat, Katia Basso, Raúl Rabadán, Laura Pasqualucci, Riccardo Dalla-Favera
Genetic mechanisms of HLA-I loss and immune escape in diffuse large B cell lymphoma. Proceedings of the National Academy of Sciences of the United States of America 118 (22) (2021)
Feixiong Cheng, Junfei Zhao, Yang Wang, Weiqiang Lu, Zehui Liu, Yadi Zhou, William R Martin, Ruisheng Wang, Jin Huang, Tong Hao, Hong Yue, Jing Ma, Yuan Hou, Jessica A Castrillon, Jiansong Fang, Justin D Lathia, Ruth A Keri, Felice C Lightstone, Elliott Marshall Antman, Raúl Rabadán, David E Hill, Charis Eng, Marc Vidal, Joseph Loscalzo
Comprehensive characterization of protein-protein interactions perturbed by disease mutations. Nature genetics 53 (3) (2021)
Delin Chen, Bo Chu, Xin Yang, Zhaoqi Liu, Ying Jin, Ning Kon, Raúl Rabadán, Xuejun Jiang, Brent R Stockwell, Wei Gu
iPLA2β-mediated lipid detoxification controls p53-driven ferroptosis independent of GPX4. Nature communications 12 (1) (2021)
Víctor A Arrieta, Andrew X Chen, J Robert Kane, Seong Jae Kang, Cynthia Kassab, Crismita Dmello, Junfei Zhao, Kirsten B Burdett, Pavan S Upadhyayula, Catalina Lee-Chang, Joseph Shilati, Dinesh Jaishankar, Li Chen, Andrew Gould, Daniel Yang Zhang, Jinzhou Yuan, Wenting Zhao, Xiaoyang Ling, Jared K Burks, Brice Laffleur, Christina Amidei, Jeffrey N Bruce, Rimas V Lukas, Jonathan T Yamaguchi, David Cieremans, Gerson Rothschild, Uttiya Basu, Matthew McCord, Daniel J Brat, Hui Zhang, Lee A D Cooper, Bin Zhang, Peter Sims, Timothy F Cloughesy, Robert M Prins, Peter Canoll, Roger Stupp, Amy B Heimberger, Craig M Horbinski, Fabio M Iwamoto, Raúl Rabadán, Adam M Sonabend
ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma. Nature cancer 2 (12) (2021)
Juan Martin Arriaga, Sukanya Panja, Mohammed Alshalalfa, Junfei Zhao, Min Zou, Arianna Giacobbe, Chioma J Madubata, Jaime Yeji Kim, Antonio Rodriguez, Ilsa Coleman, Renu K Virk, Hanina Hibshoosh, Onur Ertunc, Büşra Ozbek, Julia Fountain, R Jeffrey Karnes, Jun Luo, Emmanuel S Antonarakis, Peter S Nelson, Felix Y Feng, Mark A Rubin, Angelo M De Marzo, Raúl Rabadán, Peter A Sims, Antonina Mitrofanova, Cory Abate-Shen
A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature cancer 1 (11) (2020)
Zhaoqi Liu, Jian Zhang, Yiwei Sun, Tomin E Perea-Chamblee, James L Manley, Raúl Rabadán
Pan-cancer analysis identifies mutations in SUGP1 that recapitulate mutant SF3B1 splicing dysregulation. Proceedings of the National Academy of Sciences of the United States of America 117 (19) (2020)
Raúl Rabadán, Yamina Mohamedi, Udi Rubin, Tim Chu, Adam N Alghalith, Oliver Elliott, Luis Arnés, Santiago Cal, Álvaro J Obaya, Arnold J Levine, Pablo G Cámara
Identification of relevant genetic alterations in cancer using topological data analysis. Nature communications 11 (1) (2020)
Daniela Cerezo-Wallis, Marta Contreras-Alcalde, Kevin Troulé, Xavier Catena, Cynthia Mucientes, Tonantzin G Calvo, Estela Cañón, Cristina Tejedo, Paula C Pennacchi, Sabrina A Hogan, Peter Kölblinger, Héctor Tejero, Andrew X Chen, Nuria Ibarz, Osvaldo Graña-Castro, Lola Martinez, Javier Muñoz, Pablo Luis Ortiz-Romero, José L Rodriguez-Peralto, Gonzalo Gómez-López, Fátima Al-Shahrour, Raúl Rabadán, Mitchell P Levesque, David Olmeda, María S Soengas
Midkine rewires the melanoma microenvironment toward a tolerogenic and immune-resistant state. Nature medicine 26 (12) (2020)
Barbara Oldrini, Nuria Vaquero-Siguero, Quanhua Mu, Paula Kroon, Ying Zhang, Marcos Galán-Ganga, Zhaoshi Bao, Zheng Wang, Hanjie Liu, Jason K Sa, Junfei Zhao, Hoon Kim, Sandra Rodriguez-Perales, Do-Hyun Nam, Roel G W Verhaak, Raúl Rabadán, Tao Jiang, Ji-Guang Wang, Massimo Squatrito
MGMT genomic rearrangements contribute to chemotherapy resistance in gliomas. Nature communications 11 (1) (2020)
Neil Vasan, Pedram Razavi, Jared L Johnson, Hong Shao, Hardik Shah, Alesia Antoine, Erik Ladewig, Alexander N Gorelick, Ting-Yu Lin, Eneda Toska, Guotai Xu, Abiha Kazmi, Matthew T Chang, Barry S Taylor, Maura N Dickler, Komal Jhaveri, Sarat Chandarlapaty, Raúl Rabadán, Ed Reznik, Melissa Laird Smith, Robert Sebra, Frauke Schimmoller, Timothy R Wilson, Lori S Friedman, Lewis C Cantley, Maurizio Scaltriti, Jose Baselga
Double PIK3CA mutations in cis increase oncogenicity and sensitivity to PI3Kα inhibitors. Science (New York, N.Y.) 366 (6466) (2020)
Xiaobin S Wang, Junfei Zhao, Foon Wu-Baer, Zhengping Shao, Brian J Lee, Olivia M Cupo, Raúl Rabadán, Jean Gautier, Richard Baer, Shan Zha
CtIP-mediated DNA resection is dispensable for IgH class switch recombination by alternative end-joining. Proceedings of the National Academy of Sciences of the United States of America 117 (41) (2020)
Junfei Zhao, Andrew X Chen, Robyn D Gartrell, Andrew M Silverman, Luis Aparicio, Tim Chu, Darius Bordbar, David Shan, Jorge Samanamud, Aayushi Mahajan, Ioan Filip, Rose Orenbuch, Morgan Goetz, Jonathan T Yamaguchi, Michael Cloney, Craig Horbinski, Rimas V Lukas, Jeffrey Raizer, Ali I Rae, Jinzhou Yuan, Peter Canoll, Jeffrey N Bruce, Yvonne M Saenger, Peter Sims, Fabio M Iwamoto, Adam M Sonabend, Raúl Rabadán
Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. Nature medicine 25 (3) (2019)

Raúl Rabadán.css-eqlu8i{font-size:small;padding-left:4px;} (Raul Rabadan)

Publication Activity (10 Years)

Top Topics

Top Venues

Raúl Rabadán (Raul Rabadan)