Simon Rogers

ORCID

Publication Activity (10 Years)

Years Active: 2015-2022
Publications (10 Years): 24

Top Venues

PLoS computational biology

Plant physiology

Metabolites

Nature chemical biology

University of Glasgow

University of Bristol (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Glasgow Sep 01 2009

United Kingdom

Lecturer :: Computing Science

Education History

University of Bristol Oct 01 2001 - Jul 28 2004

United Kingdom

PHD :: Engineering Mathematics

Publications

Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D Otto
Using topic modeling to detect cellular crosstalk in scRNA-seq. PLoS computational biology 18 (4) (2022)
Eduardo Gómez Castañeda, Lisa E M Hopcroft, Simon Rogers, Chinmay Munje, Joana Bittencourt-Silvestre, Mhairi Copland, David Vetrie, Tessa Holyoake, Heather G Jørgensen
Tyrosine Kinase Inhibitor Independent Gene Expression Signature in CML Offers New Targets for LSPC Eradication Therapy. Cancers 14 (21) (2022)
Simon Rogers, Virgilio L Lew
Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits. PLoS computational biology 17 (3) (2021)
Michelle A Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D Acharya, Alexander A Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D Bauman, Martin Baunach, Christine Beemelmanns, J Michael Beman, María Victoria Berlanga-Clavero, Alex A Blacutt, Helge B Bode, Anne Boullie, Asker Brejnrod, Tim S Bugni, Alexandra Calteau, Liu Cao, Víctor J Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B Chase, Marc G Chevrette, Leticia V Costa-Lotufo, Jason M Crawford, Cameron R Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J Dutton, Anna Edlund, David Peter Fewer, Neha Garg, Julia M Gauglitz, Emily C Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G Guillén Matus, Eric J N Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R Jensen, Kyo-Bin Kang, Leonard Kaysser, Michael P Snyder, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C Little, Katherine N Maloney, Daniel Männle, Christian Martin H, Andrew C McAvoy, William W Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S Moore, Michael W Mullowney, Mitchell N Muskat, Louis-Felix Nothias, Ellis C O'Neill, Elizabeth I Parkinson, Daniel Petras, Jörn Piel, Emily C Pierce, Karine Pires, Raphael Reher, Diego Romero, M Caroline Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J Thomson, Nicholas J Tobias, Amaro E Trindade-Silva, Gilles P van Wezel, Mingxun Wang, Kelly C Weldon, Fan Zhang, Nadine Ziemert, Katherine R Duncan, Max Cruesemann, Simon Rogers, Pieter C Dorrestein, Marnix H Medema, Justin Johan Jozias van der Hooft
A community resource for paired genomic and metabolomic data mining. Nature chemical biology 17 (4) (2021)
Simon Rogers, Virgilio L Lew
PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells. PLoS computational biology 17 (3) (2021)
Vinny Davies, Joe Wandy, Stefan Weidt, Justin Johan Jozias van der Hooft, Alice Miller, Rónán Daly, Simon Rogers
Rapid Development of Improved Data-Dependent Acquisition Strategies. Analytical chemistry 93 (14) (2021)
Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H Spaaks, Faruk Diblen, Simon Rogers, Justin Johan Jozias van der Hooft
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. PLoS computational biology 17 (2) (2021)
Eric Bach, Simon Rogers, John Williamson, Juho Rousu
Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification. Bioinformatics (Oxford, England) 37 (12) (2021)
Mehdi A Beniddir, Kyo-Bin Kang, Grégory Genta-Jouve, Florian Huber, Simon Rogers, Justin Johan Jozias van der Hooft
Advances in decomposing complex metabolite mixtures using substructure- and network-based computational metabolomics approaches. Natural product reports 38 (11) (2021)
Karen McLuskey, Joe Wandy, Isabel M Vincent, Justin Johan Jozias van der Hooft, Simon Rogers, Karl E V Burgess, Rónán Daly
Ranking Metabolite Sets by Their Activity Levels. Metabolites 11 (2) (2021)
Sylvia Soldatou, Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin Johan Jozias van der Hooft, Alison H Hughes, Simon Rogers, Katherine R Duncan
Comparative Metabologenomics Analysis of Polar Actinomycetes. Marine drugs 19 (2) (2021)
Samuel P Leighton, Rajeev Krishnadas, Rachel Upthegrove, Steven Marwaha, Ewout W Steyerberg, Georgios V Gkoutos, Matthew R Broome, Peter F Liddle, Linda Everard, Swaran P Singh, Nicholas Freemantle, David Fowler, Peter B Jones, Vimal Sharma, Robin Murray, Til Wykes, Richard James Drake, Iain Buchan, Simon Rogers, Jonathan Cavanagh, Shon W Lewis, Max Birchwood, Pavan K Mallikarjun
Development and Validation of a Nonremission Risk Prediction Model in First-Episode Psychosis: An Analysis of 2 Longitudinal Studies. Schizophrenia bulletin open 2 (1) (2021)
Adam Kurkiewicz, Anneli Cooper, Emily McIlwaine, Sarah A Cumming, Berit Adam, Ralf Krahe, Jack Puymirat, Benedikt Schoser, Lubov Timchenko, Tetsuo Ashizawa, Charles A Thornton, Simon Rogers, John D McClure, Darren G Monckton
Towards development of a statistical framework to evaluate myotonic dystrophy type 1 mRNA biomarkers in the context of a clinical trial. PloS one 15 (4) (2020)
Simon Rogers, Cher Wei Ong, Joe Wandy, Madeleine Ernst, Lars Ridder, Justin Johan Jozias van der Hooft
Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra. Faraday discussions 218 (0) (2020)
Francesca Young, Simon Rogers, David L Robertson
Predicting host taxonomic information from viral genomes: A comparison of feature representations. PLoS computational biology 16 (5) (2020)
Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander A Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andrés Mauricio Caraballo-Rodriguez, Ricardo R Da Silva, Tam Dang, Neha Garg, Julia M Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan K Jarmusch, Zdeněk Kameník, Kyo-Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouëllec, Marcus Ludwig, Christian Martin H, Laura-Isobel McCall, Jonathan McSayles, Sven W Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa V Phelan, Tomáš Pluskal, Robert A Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin Johan Jozias van der Hooft, Fernando Vargas, Kelly C Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter C Dorrestein
Feature-based molecular networking in the GNPS analysis environment. Nature methods 17 (9) (2020)
Madeleine Ernst, Kyo-Bin Kang, Andrés Mauricio Caraballo-Rodríguez, Louis-Felix Nothias, Joe Wandy, Christopher Chen, Mingxun Wang, Simon Rogers, Marnix H Medema, Pieter C Dorrestein, Justin Johan Jozias van der Hooft
MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools. Metabolites 9 (7) (2019)
Joe Wandy, Vinny Davies, Justin Johan Jozias van der Hooft, Stefan K Weidt, Rónán Daly, Simon Rogers
In Silico Optimization of Mass Spectrometry Fragmentation Strategies in Metabolomics. Metabolites 9 (10) (2019)
Zaigham Shahzad, Fabian Kellermeier, Emily M Armstrong, Simon Rogers, Guillaume Lobet, Anna Amtmann, Adrian Hills
EZ-Root-VIS: A Software Pipeline for the Rapid Analysis and Visual Reconstruction of Root System Architecture. Plant physiology 177 (4) (2018)
James Newton, Gordon Ramage, Nikolaj Gadegaard, William Zachs, Simon Rogers, Michael P Barrett, Gerard Carruthers, Karl E V Burgess
Minimally-destructive atmospheric ionisation mass spectrometry authenticates authorship of historical manuscripts. Scientific reports 8 (1) (2018)
Silvere Vialet-Chabrand, Adrian Hills, Yizhou Wang, Howard Griffiths, Virgilio L Lew, Tracy Lawson, Michael R Blatt, Simon Rogers
Global Sensitivity Analysis of OnGuard Models Identifies Key Hubs for Transport Interaction in Stomatal Dynamics. Plant physiology 174 (2) (2017)
Yizhou Wang, Adrian Hills, Silvere R M Vialet-Chabrand, Maria Papanatsiou, Howard Griffiths, Simon Rogers, Tracy Lawson, Virgilio L Lew, Michael R Blatt
Unexpected Connections between Humidity and Ion Transport Discovered Using a Model to Bridge Guard Cell-to-Leaf Scales. The Plant cell 29 (11) (2017)
Justin Johan Jozias van der Hooft, Joe Wandy, Michael P Barrett, Karl E V Burgess, Simon Rogers
Topic modeling for untargeted substructure exploration in metabolomics. Proceedings of the National Academy of Sciences of the United States of America 113 (48) (2016)
Carla Minguet-Parramona, Yizhou Wang, Adrian Hills, Silvere Vialet-Chabrand, Howard Griffiths, Simon Rogers, Tracy Lawson, Virgilio L Lew, Michael R Blatt
An Optimal Frequency in Ca2+ Oscillations for Stomatal Closure Is an Emergent Property of Ion Transport in Guard Cells. Plant physiology 170 (1) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Simon Rogers