Yasuo Yoshikuni

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 26

Top Venues

Nature chemical biology

Proceedings of the National Academy of Sciences of the United States of America

Communications chemistry

The ISME journal

Lawrence Berkeley National Laboratory

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Lawrence Berkeley National Laboratory

United States

Staff Scientist :: JGI, EGSB, BSE

Bio Architecture Lab, Inc.

United States

Co-founder, CSO, Head of corporate IP

Education History

University of California Berkeley

United States

PHD :: Bioengineering

Publications

Youngchang Kim, Seung Hwan Lee, Priyanka Gade, Maren Nattermann, Natalia Ivanovna Maltseva, Michael Endres, Jing Chen, Philipp Wichmann, Yang Hu, Daniel G Marchal, Yasuo Yoshikuni, Tobias J Erb, Ramon Gonzalez, Karolina Michalska, Andrzej Joachimiak
Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications chemistry 7 (1) (2024)
Youngchang Kim, Seung Hwan Lee, Priyanka Gade, Maren Nattermann, Natalia Ivanovna Maltseva, Michael Endres, Jing Chen, Philipp Wichmann, Yang Hu, Daniel G Marchal, Yasuo Yoshikuni, Tobias J Erb, Ramon Gonzalez, Karolina Michalska, Andrzej Joachimiak
Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications chemistry 7 (1) (2024)
Kaan Koper, Sang-Woo Han, Ramani Kothadia, Hugh Salamon, Yasuo Yoshikuni, Hiroshi A Maeda
Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life. Proceedings of the National Academy of Sciences of the United States of America 121 (26) (2024)
Kaan Koper, Sang-Woo Han, Ramani Kothadia, Hugh Salamon, Yasuo Yoshikuni, Hiroshi A Maeda
Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life. Proceedings of the National Academy of Sciences of the United States of America 121 (26) (2024)
Yihui Shen, Hoang V Dinh, Edward R Cruz, Zihong Chen, Caroline R Bartman, Tianxia Xiao, Catherine M Call, Rolf-Peter Ryseck, Jimmy Pratas, Daniel Weilandt, Heide Baron, Arjuna Subramanian, Zia Fatma, Zong-Yen Wu, Sudharsan Dwaraknath, John I Hendry, Vinh G Tran, Lifeng Yang, Yasuo Yoshikuni, Huimin Zhao, Costas D Maranas, Martin Wühr, Joshua D Rabinowitz
Mitochondrial ATP generation is more proteome efficient than glycolysis. Nature chemical biology (2024)
Yihui Shen, Hoang V Dinh, Edward R Cruz, Zihong Chen, Caroline R Bartman, Tianxia Xiao, Catherine M Call, Rolf-Peter Ryseck, Jimmy Pratas, Daniel Weilandt, Heide Baron, Arjuna Subramanian, Zia Fatma, Zong-Yen Wu, Sudharsan Dwaraknath, John I Hendry, Vinh G Tran, Lifeng Yang, Yasuo Yoshikuni, Huimin Zhao, Costas D Maranas, Martin Wühr, Joshua D Rabinowitz
Mitochondrial ATP generation is more proteome efficient than glycolysis. Nature chemical biology (2024)
Yihui Shen, Hoang V Dinh, Edward R Cruz, Zihong Chen, Caroline R Bartman, Tianxia Xiao, Catherine M Call, Rolf-Peter Ryseck, Jimmy Pratas, Daniel Weilandt, Heide Baron, Arjuna Subramanian, Zia Fatma, Zong-Yen Wu, Sudharsan Dwaraknath, John I Hendry, Vinh G Tran, Lifeng Yang, Yasuo Yoshikuni, Huimin Zhao, Costas D Maranas, Martin Wühr, Joshua D Rabinowitz
Mitochondrial ATP generation is more proteome efficient than glycolysis. Nature chemical biology 20 (9) (2024)
Youngchang Kim, Seung Hwan Lee, Priyanka Gade, Maren Nattermann, Natalia Ivanovna Maltseva, Michael Endres, Jing Chen, Philipp Wichmann, Yang Hu, Daniel G Marchal, Yasuo Yoshikuni, Tobias J Erb, Ramon Gonzalez, Karolina Michalska, Andrzej Joachimiak
Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications chemistry 7 (1) (2024)
Yihui Shen, Hoang V Dinh, Edward R Cruz, Zihong Chen, Caroline R Bartman, Tianxia Xiao, Catherine M Call, Rolf-Peter Ryseck, Jimmy Pratas, Daniel Weilandt, Heide Baron, Arjuna Subramanian, Zia Fatma, Zong-Yen Wu, Sudharsan Dwaraknath, John I Hendry, Vinh G Tran, Lifeng Yang, Yasuo Yoshikuni, Huimin Zhao, Costas D Maranas, Martin Wühr, Joshua D Rabinowitz
Mitochondrial ATP generation is more proteome efficient than glycolysis. Nature chemical biology (2024)
Kaan Koper, Sang-Woo Han, Ramani Kothadia, Hugh Salamon, Yasuo Yoshikuni, Hiroshi A Maeda
Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life. Proceedings of the National Academy of Sciences of the United States of America 121 (26) (2024)
Yihui Shen, Hoang V Dinh, Edward R Cruz, Zihong Chen, Caroline R Bartman, Tianxia Xiao, Catherine M Call, Rolf-Peter Ryseck, Jimmy Pratas, Daniel Weilandt, Heide Baron, Arjuna Subramanian, Zia Fatma, Zong-Yen Wu, Sudharsan Dwaraknath, John I Hendry, Vinh G Tran, Lifeng Yang, Yasuo Yoshikuni, Huimin Zhao, Costas D Maranas, Martin Wühr, Joshua D Rabinowitz
Mitochondrial ATP generation is more proteome efficient than glycolysis. Nature chemical biology 20 (9) (2024)
Veronika Dubinkina, Shounak Bhogale, Ping-Hung Hsieh, Payam Dibaeinia, Ananthan Nambiar, Sergei Maslov, Yasuo Yoshikuni, Saurabh Sinha
A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains. Microbiology spectrum (2023)
Zhiying Zhao, Yasuo Yoshikuni
Discovering untapped biochemistry in microorganisms from hidden corners. Nature reviews. Microbiology 20 (11) (2022)
Hasan DeMirci, Yashas Rao, Gabriele M Stoffel, Bastian Vögeli, Kristina Schell, Aharon Gomez, Alexander Batyuk, Cornelius Gati, Raymond G Sierra, Mark S Hunter, E Han Dao, Halil I Ciftci, Brandon Hayes, Fredric Poitevin, Po-Nan Li, Manat Kaur, Kensuke Tono, David Adrian Saez, Samuel Deutsch, Yasuo Yoshikuni, Helmut Grubmüller, Tobias J Erb, Esteban Vöhringer-Martinez, Soichi Wakatsuki
Intersubunit Coupling Enables Fast CO 2 -Fixation by Reductive Carboxylases. ACS central science 8 (8) (2022)
Ye-Gi Lee, Chanwoo Kim, Nurzhan Kuanyshev, Nam Kyu Kang, Zia Fatma, Zong-Yen Wu, Ming-Hsun Cheng, Vijay Singh, Yasuo Yoshikuni, Huimin Zhao, Yong-Su Jin
Cas9-Based Metabolic Engineering of Issatchenkia orientalis for Enhanced Utilization of Cellulosic Hydrolysates. Journal of agricultural and food chemistry 70 (38) (2022)
Spencer S Macdonald, Jose H Pereira, Feng Liu, Gregor Tegl, Andy DeGiovanni, Jacob F Wardman, Samuel Deutsch, Yasuo Yoshikuni, Paul D Adams, Stephen G Withers
A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β-Linked GlcNAc Polysaccharides. ACS central science 8 (4) (2022)
Ruonan Wu, Clyde A Smith, Garry W Buchko, Ian K Blaby, David Paez-Espino, Nikos C Kyrpides, Yasuo Yoshikuni, Jason E McDermott, Kirsten S Hofmockel, John R Cort, Janet K Jansson
Structural characterization of a soil viral auxiliary metabolic gene product - a functional chitosanase. Nature communications 13 (1) (2022)
Nikita A Khlystov, Yasuo Yoshikuni, Samuel Deutsch, Elizabeth S Sattely
A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes. Communications biology 4 (1) (2021)
Bing Wang, Zhiying Zhao, Lauren K Jabusch, Dawn M Chiniquy, Koyo Ono, Jonathan M Conway, Zheyun Zhang, Gaoyan Wang, David Robinson, Jan-Fang Cheng, Jeffery L Dangl, Trent R Northen, Yasuo Yoshikuni
CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant-Microbe Interactions. ACS synthetic biology 9 (9) (2020)
Emily K Bowman, Matthew Deaner, Jan-Fang Cheng, Robert Evans, Ernst Oberortner, Yasuo Yoshikuni, Hal S Alper
Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach. Proceedings of the National Academy of Sciences of the United States of America 117 (31) (2020)
Jing Huang, Zheng Yu, Joseph Groom, Jan-Fang Cheng, Angela Tarver, Yasuo Yoshikuni, Ludmila Chistoserdova
Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes. The ISME journal 13 (8) (2019)
Devin F R Doud, Robert M Bowers, Frederik Schulz, Markus De Raad, Kai Deng, Angela Tarver, Evan Glasgow, Kirk Vander Meulen, Brian Fox, Sam Deutsch, Yasuo Yoshikuni, Trent R Northen, Brian P Hedlund, Steven W Singer, Natalia N Ivanova, Tanja Woyke
Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere. The ISME journal 14 (3) (2019)
Gaoyan Wang, Zhiying Zhao, Jing Ke, Yvonne Engel, Yi-Ming Shi, David Robinson, Kerem Bingol, Zheyun Zhang, Benjamin Bowen, Katherine Louie, Bing Wang, Robert Evans, Yu Miyamoto, Kelly Cheng, Suzanne M Kosina, Markus de Raad, Leslie Silva, Alicia Luhrs, Andrea Lubbe, David W Hoyt, Charles Francavilla, Hiroshi Otani, Samuel Deutsch, Nancy M Washton, Edward M Rubin, Nigel J Mouncey, Axel Visel, Trent R Northen, Jan-Fang Cheng, Helge B Bode, Yasuo Yoshikuni
CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria. Nature microbiology 4 (12) (2019)
Steven G Hussey, Jacqueline Grima-Pettenati, Alexander A Myburg, Eshchar Mizrachi, Siobhan M Brady, Yasuo Yoshikuni, Samuel Deutsch
A Standardized Synthetic Eucalyptus Transcription Factor and Promoter Panel for Re-engineering Secondary Cell Wall Regulation in Biomass and Bioenergy Crops. ACS synthetic biology 8 (2) (2019)
Gabriele M M Stoffel, David Adrian Saez, Hasan DeMirci, Bastian Vögeli, Yashas Rao, Jan Zarzycki, Yasuo Yoshikuni, Soichi Wakatsuki, Esteban Vöhringer-Martinez, Tobias J Erb
Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases. Proceedings of the National Academy of Sciences of the United States of America 116 (28) (2019)
Sasha Langley, Ferran Garcia-Pichel, Kenneth H Wan, Robin A Herbert, Andrew P Klein, Yasuo Yoshikuni, Susannah G Tringe, James B Brown, Susan E Celniker, Jennifer C Mortimer, Aindrila Mukhopadhyay
Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots. Microbiology resource announcements 8 (37) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Yasuo Yoshikuni