Charles Boone

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 38

Top Topics

Saccharomyces Cerevisiae

Top Venues

Molecular systems biology

G3 (Bethesda, Md.)

Communications biology

This page only lists publications with an associated author ORCID identifier.

Publications

Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Elnaz Khalili Samani, Amy C Chen, Jennifer W Lou, David L Dai, Alexander F A Keszei, Guihong Tan, Charles Boone, Martin Grininger, Mohammad T Mazhab-Jafari
Direct structural analysis of a single acyl carrier protein domain in fatty acid synthase from the fungus Saccharomyces cerevisiae. Communications biology 7 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology (2024)
Elnaz Khalili Samani, Amy C Chen, Jennifer W Lou, David L Dai, Alexander F A Keszei, Guihong Tan, Charles Boone, Martin Grininger, Mohammad T Mazhab-Jafari
Direct structural analysis of a single acyl carrier protein domain in fatty acid synthase from the fungus Saccharomyces cerevisiae. Communications biology 7 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Elnaz Khalili Samani, Amy C Chen, Jennifer W Lou, David L Dai, Alexander F A Keszei, Guihong Tan, Charles Boone, Martin Grininger, Mohammad T Mazhab-Jafari
Direct structural analysis of a single acyl carrier protein domain in fatty acid synthase from the fungus Saccharomyces cerevisiae. Communications biology 7 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: A Central Repository for Visualizing and Mining High-Content Cell Imaging Projects. Genetics (2024)
Elnaz Khalili Samani, Amy C Chen, Jennifer W Lou, David L Dai, Alexander F A Keszei, Guihong Tan, Charles Boone, Martin Grininger, Mohammad T Mazhab-Jafari
Direct structural analysis of a single acyl carrier protein domain in fatty acid synthase from the fungus Saccharomyces cerevisiae. Communications biology 7 (1) (2024)
Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda J Andrews
PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data. Molecular systems biology 20 (5) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: a central repository for visualizing and mining high-content cell imaging projects. Genetics 227 (1) (2024)
Myra Paz David Masinas, Athanasios Litsios, Anastasia Razdaibiedina, Matej Usaj, Charles Boone, Brenda J Andrews
Expanding TheCellVision.org: A Central Repository for Visualizing and Mining High-Content Cell Imaging Projects. Genetics (2024)
Sylvia Varland, Rui Duarte Silva, Ine Kjosås, Alexandra Faustino, Annelies Bogaert, Maximillian Billmann, Hadi Boukhatmi, Barbara Kellen, Michael Costanzo, Adrian Drazic, Camilla Osberg, Katherine Chan, Xiang Zhang, Amy Hin Yan Tong, Simonetta Andreazza, Juliette J Lee, Lyudmila Nedyalkova, Matej Ušaj, Alexander J Whitworth, Brenda J Andrews, Jason Moffat, Chad L Myers, Kris Gevaert, Charles Boone, Rui Gonçalo Martinho, Thomas Arnesen
N-terminal acetylation shields proteins from degradation and promotes age-dependent motility and longevity. Nature communications 14 (1) (2023)
Duncan T Forster, Sheena C Li, Yoko Yashiroda, Mami Yoshimura, Zhijian Li, Luis Alberto Vega Isuhuaylas, Kaori Itto-Nakama, Daisuke Yamanaka, Yoshikazu Ohya, Hiroyuki Osada, Bo Wang, Gary D Baider, Charles Boone
BIONIC: biological network integration using convolutions. Nature methods 19 (10) (2022)
Nicole M Revie, Kali R Iyer, Michelle E Maxson, Jiabao Zhang, Su Yan, Caroline M Fernandes, Kirsten J Meyer, Xuefei Chen, Iwona Skulska, Meea Fogal, Hiram Sanchez, Saif Hossain, Sheena Li, Yoko Yashiroda, Hiroyuki Hirano, Minoru Yoshida, Hiroyuki Osada, Charles Boone, Rebecca S Shapiro, David R Andes, Gerard D Wright, Justin R Nodwell, Maurizio Del Poeta, Martin D Burke, Luke Whitesell, Nicole Robbins, Leah E Cowen
Targeting fungal membrane homeostasis with imidazopyrazoindoles impairs azole resistance and biofilm formation. Nature communications 13 (1) (2022)
Jessica R Eisenstatt, Kentaro Ohkuni, Wei-Chun Au, Olivia Preston, Loran Gliford, Evelyn Suva, Michael Costanzo, Charles Boone, Munira A Basrai
Reduced gene dosage of histone H4 prevents CENP-A mislocalization and chromosomal instability in Saccharomyces cerevisiae. Genetics 218 (1) (2022)
Mahfuzur Rahman, Maximillian Billmann, Michael Costanzo, Michael Aregger, Amy H Y Tong, Katherine Chan, Henry Neil Ward, Kevin R Brown, Brenda J Andrews, Charles Boone, Jason Moffat, Chad L Myers
A method for benchmarking genetic screens reveals a predominant mitochondrial bias. Molecular systems biology 17 (5) (2022)
Yuko Arita, Griffin Kim, Zhijian Li, Helena Friesen, Gina Turco, Rebecca Y Wang, Dale Climie, Matej Usaj, Manuel Hotz, Emily H Stoops, Anastasia Baryshnikova, Charles Boone, David Botstein, Brenda J Andrews, R Scott McIsaac
A genome-scale yeast library with inducible expression of individual genes. Molecular systems biology 17 (6) (2022)
Matthew D Berg, Yanrui Zhu, Raphaël Loll-Krippleber, Bryan-Joseph San Luis, Julie Genereaux, Charles Boone, Judit Vill N, Grant W Brown, Christopher J Brandl
Genetic background and mistranslation frequency determine the impact of mistranslating tRNASerUGG. G3 (Bethesda, Md.) 12 (7) (2022)
Keisuke Tomita, Yoko Yashiroda, Yasuhiro Matsuo, Jeff S Piotrowski, Sheena C Li, Reika Okamoto, Mami Yoshimura, Hiromi Kimura, Yumi Kawamura, Makoto Kawamukai, Charles Boone, Minoru Yoshida, Hideaki Nojiri, Kazunori Okada
Genome-wide screening of genes associated with momilactone B sensitivity in the fission yeast Schizosaccharomyces pombe. G3 (Bethesda, Md.) 11 (8) (2022)
Karen Kubo, Kaori Itto-Nakama, Shinsuke Ohnuki, Yoko Yashiroda, Sheena C Li, Hiromi Kimura, Yumi Kawamura, Yasuhiro Shimamoto, Ken-Ichi Tominaga, Daisuke Yamanaka, Yoshiyuki Adachi, Shinichiro Takashima, Yoichi Noda, Charles Boone, Yoshikazu Ohya
Jerveratrum-Type Steroidal Alkaloids Inhibit β-1,6-Glucan Biosynthesis in Fungal Cell Walls. Microbiology spectrum 10 (1) (2022)
Sanna N Masud, Megha Chandrashekhar, Michael Aregger, Guihong Tan, Xiaoyu Zhang, Patricia Mero, David A Pirman, Olga Zaslaver, Gromoslaw A Smolen, Zhen-Yuan Lin, Cassandra J Wong, Charles Boone, Anne-Claude Gingras, J Rafael Montenegro-Burke, Jason Moffat
Chemical genomics with pyrvinium identifies C1orf115 as a regulator of drug efflux. Nature chemical biology 18 (12) (2022)
Michael Costanzo, Jing Hou, Vincent Messier, Justin Nelson, Mahfuzur Rahman, Benjamin VanderSluis, Wen Wang, Carles Pons, Catherine Ross, Matej Usaj, Bryan-Joseph San Luis, Emira Shuteriqi, Elizabeth N Koch, Patrick Aloy, Chad L Myers, Charles Boone, Brenda J Andrews
Environmental robustness of the global yeast genetic interaction network. Science (New York, N.Y.) 372 (6542) (2021)
Matthew D Berg, Yanrui Zhu, Bianca Y Ruiz, Raphaël Loll-Krippleber, Joshua Isaacson, Bryan-Joseph San Luis, Julie Genereaux, Charles Boone, Judit Villén, Grant W Brown, Christopher J Brandl
The amino acid substitution affects cellular response to mistranslation. G3 (Bethesda, Md.) 11 (10) (2021)
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Jason Zi Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Systematic analysis of bypass suppression of essential genes. Molecular systems biology 16 (9) (2021)
Ci Fu, Xiang Zhang, Amanda O Veri, Kali R Iyer, Emma Lash, Alice Xue, Huijuan Yan, Nicole M Revie, Cassandra Wong, Zhen-Yuan Lin, Elizabeth J Polvi, Sean D Liston, Benjamin VanderSluis, Jing Hou, Yoko Yashiroda, Anne-Claude Gingras, Charles Boone, Teresa R O'Meara, Matthew J O'Meara, Suzanne Noble, Nicole Robbins, Chad L Myers, Leah E Cowen
Leveraging machine learning essentiality predictions and chemogenomic interactions to identify antifungal targets. Nature communications 12 (1) (2021)
Elena Kuzmin, Mahfuzur Rahman, Benjamin VanderSluis, Michael Costanzo, Chad L Myers, Brenda J Andrews, Charles Boone
τ-SGA: synthetic genetic array analysis for systematically screening and quantifying trigenic interactions in yeast. Nature protocols 16 (2) (2021)
Michael Aregger, Keith A Lawson, Maximillian Billmann, Michael Costanzo, Amy H Y Tong, Katherine Chan, Mahfuzur Rahman, Kevin R Brown, Catherine Ross, Matej Usaj, Lucy Nedyalkova, Olga Sizova, Andrea Habsid, Judy Pawling, Zhen-Yuan Lin, Hala Abdouni, Cassandra J Wong, Alexander Weiss, Patricia Mero, James W Dennis, Anne-Claude Gingras, Chad L Myers, Brenda J Andrews, Charles Boone, Jason Moffat
Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism. Nature metabolism 2 (6) (2020)
Elena Kuzmin, Benjamin VanderSluis, Alex N Nguyen Ba, Wen Wang, Elizabeth N Koch, Matej Usaj, Anton Khmelinskii, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Oren Kraus, Amy Tresenrider, Michael Pryszlak, Ming-Che Hu, Brenda Varriano, Michael Costanzo, Michael Knop, Alan M Moses, Chad L Myers, Brenda J Andrews, Charles Boone
Exploring whole-genome duplicate gene retention with complex genetic interaction analysis. Science (New York, N.Y.) 368 (6498) (2020)
Myra Paz David Masinas, Mojca Mattiazzi Usaj, Matej Usaj, Charles Boone, Brenda J Andrews
TheCellVision.org: A Database for Visualizing and Mining High-Content Cell Imaging Projects. G3 (Bethesda, Md.) 10 (11) (2020)
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N Koch, Carles Pons, Andrius J Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy A Caudy, Daniel I Bolnick, Grant W Brown, Brenda J Andrews, Charles Boone, Chad L Myers
Systematic analysis of complex genetic interactions. Science (New York, N.Y.) 360 (6386) (2018)