Toni Gabaldon (Toni Gabaldón, T Gabaldón)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 54

Top Venues

BMC biology

Cancers

PLoS genetics

Biological reviews of the Cambridge Philosophical Society

Institut de Recerca Biomèdica

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institut de Recerca Biomèdica Apr 1o 2019

Spain

Senior Group Leader :: Bases of disease

Publications

Amir Arastehfar, Farnaz Daneshnia, Hrant Hovhannisyan, Diego Fuentes, Nathaly Cabrera, Christopher Quintin, Macit Ilkit, Nevzat Ünal, Suleyha Hilmioglu Polat, Kauser Jabeen, Sadaf Zaka, Jigar V Desai, Cornelia Lass-Flörl, Erika Shor, Toni Gabaldon, David S Perlin
Overlooked Candida glabrata petites are echinocandin tolerant, induce host inflammatory responses, and display poor in vivo fitness. bioRxiv : the preprint server for biology (2023)
Verónica Mixão, Juan Carlos Nunez-Rodriguez, Valentina Del Olmo, Ewa Ksiezopolska, Ester Saus, Teun Boekhout, Attila Gacser, Toni Gabaldon
Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens. BMC biology 21 (1) (2023)
Irene Julca, Pablo Vargas, Toni Gabaldon
Phylogenomics of the Olea europaea complex using 15 whole genomes supports recurrent genetic admixture together with differentiation into seven subspecies. BMC biology 21 (1) (2023)
Verónica Mixão, Juan Carlos Nunez-Rodriguez, Valentina Del Olmo, Ewa Ksiezopolska, Ester Saus, Teun Boekhout, Attila Gacser, Toni Gabaldon
Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens. BMC biology 21 (1) (2023)
Verónica Mixão, Juan Carlos Nunez-Rodriguez, Valentina Del Olmo, Ewa Ksiezopolska, Ester Saus, Teun Boekhout, Attila Gacser, Toni Gabaldon
Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens. BMC biology 21 (1) (2023)
Ferdinand Marletaz, Elisa de la Calle-Mustienes, Rafael D Acemel, Christina Paliou, Silvia Naranjo, Pedro Manuel Martínez-García, Ildefonso Cases, Victoria A Sleight, Christine Hirschberger, Marina Marcet-Houben, Dina Navon, Ali Andrescavage, Ksenia Skvortsova, Paul Edward Duckett, Álvaro González-Rajal, Ozren Bogdanovic, Johan H Gibcus, Liyan Yang, Lourdes Gallardo-Fuentes, Ismael Sospedra, Javier Lopez-Rios, Fabrice Darbellay, Axel Visel, Job Dekker, Neil Shubin, Toni Gabaldon, Tetsuya Nakamura, Juan J Tena, Darío G Lupiáñez, Daniel S Rokhsar, José Luis Gómez-Skarmeta
The little skate genome and the evolutionary emergence of wing-like fins. Nature (2023)
Amir Arastehfar, Farnaz Daneshnia, Hrant Hovhannisyan, Diego Fuentes, Nathaly Cabrera, Christopher Quinteros, Macit Ilkit, Nevzat Ünal, Suleyha Hilmioğlu-Polat, Kauser Jabeen, Sadaf Zaka, Jigar V Desai, Cornelia Lass-Flörl, Erika Shor, Toni Gabaldon, David S Perlin
Overlooked Candida glabrata petites are echinocandin tolerant, induce host inflammatory responses, and display poor in vivo fitness. mBio (2023)
Efe Aydın, Ester Saus, Uciel Chorostecki, Toni Gabaldon
A hybrid approach to assess the structural impact of long noncoding RNA mutations uncovers key NEAT1 interactions in colorectal cancer. IUBMB life (2023)
Verónica Mixão, Juan Carlos Nunez-Rodriguez, Valentina Del Olmo, Ewa Ksiezopolska, Ester Saus, Teun Boekhout, Attila Gacser, Toni Gabaldon
Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens. BMC biology 21 (1) (2023)
Ana Cristina Colabardini, Fang Wang, Zhengqiang Miao, Lakhansing Pardeshi, Clara Valero, Patrícia Alves de Castro, Daniel Yuri Akiyama, Kaeling Tan, Luísa Czamanski Nora, Rafael Silva-Rocha, Marina Marcet-Houben, Toni Gabaldon, Taicia Fill, Koon Ho Wong, Gustavo Henrique Goldman
Chromatin profiling reveals heterogeneity in clinical isolates of the human pathogen Aspergillus fumigatus. PLoS genetics 18 (1) (2022)
Olfat Khannous-Lleiffe, Jesse R Willis, Ester Saus, Victor Moreno, Sergi Castellví-Bel, Toni Gabaldon, null On Behalf Of The Criprev Consortium
Microbiome Profiling from Fecal Immunochemical Test Reveals Microbial Signatures with Potential for Colorectal Cancer Screening. Cancers 15 (1) (2022)
Andrea Cillingová, Renáta Tóth, Anna Mojáková, Igor Zeman, Romana Vrzoňová, Barbara Siváková, Peter Baráth, Martina Neboháčová, Zuzana Klepcová, Filip Brázdovič, Hana Lichancová, Viktória Hodorová, Broňa Brejová, Tomáš Vinař, Sofia Mutalová, Veronika Vozáriková, Giacomo Mutti, L'ubomír Tomáška, Attila Gácser, Toni Gabaldon, Jozef Nosek
Transcriptome and proteome profiling reveals complex adaptations of Candida parapsilosis cells assimilating hydroxyaromatic carbon sources. PLoS genetics 18 (3) (2022)
Marina Marcet-Houben, María Alvarado, Ewa Ksiezopolska, Ester Saus, Piet W J de Groot, Toni Gabaldon
Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata. BMC biology 20 (1) (2022)
Miguel A Naranjo-Ortiz, Manu Molina, Diego Fuentes, Verónica Mixão, Toni Gabaldon
Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies. GigaScience 11 (2022)
Miquel Àngel Schikora-Tamarit, Toni Gabaldon
PerSVade: personalized structural variant detection in any species of interest. Genome biology 23 (1) (2022)
Olfat Khannous-Lleiffe, Jesse R Willis, Ester Saus, Victor Moreno, Sergi Castellví-Bel, Toni Gabaldon, null On Behalf Of The Criprev Consortium
Microbiome Profiling from Fecal Immunochemical Test Reveals Microbial Signatures with Potential for Colorectal Cancer Screening. Cancers 15 (1) (2022)
Verónica Mixão, Valentina Del Olmo, Eva Hegedűsová, Ester Saus, Leszek Pryszcz, Andrea Cillingová, Jozef Nosek, Toni Gabaldon
Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex. DNA research : an international journal for rapid publication of reports on genes and genomes 29 (2) (2022)
Olfat Khannous-Lleiffe, Jesse R Willis, Ester Saus, Victor Moreno, Sergi Castellví-Bel, Toni Gabaldon, null On Behalf Of The Criprev Consortium
Microbiome Profiling from Fecal Immunochemical Test Reveals Microbial Signatures with Potential for Colorectal Cancer Screening. Cancers 15 (1) (2022)
Madison Snyder, Susana Iraola-Guzmán, Ester Saus, Toni Gabaldon
Discovery and Validation of Clinically Relevant Long Non-Coding RNAs in Colorectal Cancer. Cancers 14 (16) (2022)
Marina Pekmezovic, Hrant Hovhannisyan, Mark S Gresnigt, Elise Iracane, João Oliveira-Pacheco, Sofía Siscar-Lewin, Eric Seemann, Britta Qualmann, Till Kalkreuter, Sylvia Müller, Thomas Kamradt, Selene Mogavero, Sascha Brunke, Geraldine Butler, Toni Gabaldon, Bernhard Hube
Candida pathogens induce protective mitochondria-associated type I interferon signalling and a damage-driven response in vaginal epithelial cells. Nature microbiology 6 (5) (2021)
Diego Fuentes, Manuel Molina, Uciel Chorostecki, Salvador Capella, Marina Marcet-Houben, Toni Gabaldon
PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies. Nucleic acids research (2021)
Verónica Mixão, Eva Hegedűsová, Ester Saus, Leszek P Pryszcz, Andrea Cillingová, Jozef Nosek, Toni Gabaldon
Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations. DNA research : an international journal for rapid publication of reports on genes and genomes 28 (3) (2021)
Jesse R Willis, Ester Saus, Susana Iraola-Guzmán, Elena Cabello-Yeves, Ewa Ksiezopolska, Luca Cozzuto, Luis A Bejarano, Nuria Andreu-Somavilla, Miriam Alloza-Trabado, Andrea Blanco, Anna Puig-Sola, Elisabetta Broglio, Carlo Carolis, Julia Ponomarenko, Jochen Hecht, Toni Gabaldon
Citizen-science based study of the oral microbiome in Cystic fibrosis and matched controls reveals major differences in diversity and abundance of bacterial and fungal species. Journal of oral microbiology 13 (1) (2021)
Shelby J Priest, Marco A Coelho, Verónica Mixão, Shelly Applen Clancey, Yitong Xu, Sheng Sun, Toni Gabaldon, Joseph Heitman
Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans. PLoS genetics 17 (1) (2021)
Olfat Khannous-Lleiffe, Jesse R Willis, Ester Saus, Ignacio Cabrera-Aguilera, Isaac Almendros, Ramon Farré, David Gozal, Núria Farre, Toni Gabaldon
A Mouse Model Suggests That Heart Failure and Its Common Comorbidity Sleep Fragmentation Have No Synergistic Impacts on the Gut Microbiome. Microorganisms 9 (3) (2021)
Teun Boekhout, Mary Catherine Aime, Dominik Begerow, Toni Gabaldon, Joseph Heitman, Martin Kemler, Kantarawee Khayhan, Marc-André Lachance, Edward J Louis, Sheng Sun, Duong Vu, Andrey M Yurkov
The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks. Fungal diversity 109 (1) (2021)
Marina Marcet-Houben, Maria Villarino, Laura Vilanova, Antonieta De Cal, Jan A L van Kan, Josep Usall, Toni Gabaldon, Rosario Torres
Comparative Genomics Used to Predict Virulence Factors and Metabolic Genes among Monilinia Species. Journal of fungi (Basel, Switzerland) 7 (6) (2021)
Marina Pekmezovic, Ann-Kristin Kaune, Sophie Austermeier, Sophia U J Hitzler, Selene Mogavero, Hrant Hovhannisyan, Toni Gabaldon, Mark S Gresnigt, Bernhard Hube
Human albumin enhances the pathogenic potential of Candida glabrata on vaginal epithelial cells. PLoS pathogens 17 (10) (2021)
Jesse R Willis, Susana Iraola-Guzmán, Ester Saus, Ewa Ksiezopolska, Luca Cozzuto, Luis A Bejarano, Nuria Andreu-Somavilla, Miriam Alloza-Trabado, Anna Puig-Sola, Andrea Blanco, Elisabetta Broglio, Carlo Carolis, Jochen Hecht, Julia Ponomarenko, Toni Gabaldon
Oral microbiome in down syndrome and its implications on oral health. Journal of oral microbiology 13 (1) (2020)
Miguel A Naranjo-Ortiz, Toni Gabaldon
Fungal evolution: diversity, taxonomy and phylogeny of the Fungi. Biological reviews of the Cambridge Philosophical Society 94 (6) (2020)
Julian Vosseberg, Jolien J E van Hooff, Marina Marcet-Houben, Anne E van Vlimmeren, Leny M van Wijk, Toni Gabaldon, Berend Snel
Timing the origin of eukaryotic cellular complexity with ancient duplications. Nature ecology & evolution 5 (1) (2020)
Irene Julca, Marina Marcet-Houben, Fernando Cruz, Jèssica Gómez-Garrido, Brandon S Gaut, Concepción M Díez, Ivo G Gut, Tyler S Alioto, Pablo Vargas, Toni Gabaldon
Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.). BMC biology 18 (1) (2020)
Amir Arastehfar, Cornelia Lass-Flörl, Rocio Garcia-Rubio, Farnaz Daneshnia, Macit Ilkit, Teun Boekhout, Toni Gabaldon, David S Perlin
The Quiet and Underappreciated Rise of Drug-Resistant Invasive Fungal Pathogens. Journal of fungi (Basel, Switzerland) 6 (3) (2020)
Matteo Schiavinato, Marina Marcet-Houben, Juliane C Dohm, Toni Gabaldon, Heinz Himmelbauer
Parental origin of the allotetraploid tobacco Nicotiana benthamiana. The Plant journal : for cell and molecular biology 102 (3) (2020)
Raul Bescos, P Casas-Agustench, L Belfield, Z Brookes, Toni Gabaldon
Coronavirus Disease 2019 (COVID-19): Emerging and Future Challenges for Dental and Oral Medicine. Journal of dental research 99 (9) (2020)
Amir Arastehfar, Toni Gabaldon, Rocio Garcia-Rubio, Jeffrey D Jenks, Martin Hoenigl, Helmut J F Salzer, Macit Ilkit, Cornelia Lass-Flörl, David S Perlin
Drug-Resistant Fungi: An Emerging Challenge Threatening Our Limited Antifungal Armamentarium. Antibiotics (Basel, Switzerland) 9 (12) (2020)
Csaba Papp, Flóra Bohner, Katica Kocsis, Mónika Varga, András Szekeres, László Bodai, Jesse R Willis, Toni Gabaldon, Renáta Tóth, Joshua D Nosanchuk, Csaba Vágvölgyi, Attila Gácser
Triazole Evolution of Candida parapsilosis Results in Cross-Resistance to Other Antifungal Drugs, Influences Stress Responses, and Alters Virulence in an Antifungal Drug-Dependent Manner. mSphere 5 (5) (2020)
Miguel A Naranjo-Ortiz, Toni Gabaldon
Fungal evolution: cellular, genomic and metabolic complexity. Biological reviews of the Cambridge Philosophical Society 95 (5) (2020)
Alexandros A Pittis, Valerie Goh, Alberto Cebrian-Serrano, Jennifer Wettmarshausen, Fabiana Perocchi, Toni Gabaldon
Discovery of EMRE in fungi resolves the true evolutionary history of the mitochondrial calcium uniporter. Nature communications 11 (1) (2020)
Toni Gabaldon
Patterns and impacts of nonvertical evolution in eukaryotes: a paradigm shift. Annals of the New York Academy of Sciences 1476 (1) (2020)
Pedro González-Torres, Francisco Rodríguez-Mateos, Josefa Antón, Toni Gabaldon
Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes. mBio 10 (1) (2019)
Cinta Pegueroles, Susana Iraola-Guzmán, Uciel Chorostecki, Ewa Ksiezopolska, Ester Saus, Toni Gabaldon
Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis. RNA biology 16 (3) (2019)
Miguel A Naranjo-Ortiz, Toni Gabaldon
Fungal evolution: major ecological adaptations and evolutionary transitions. Biological reviews of the Cambridge Philosophical Society 94 (4) (2019)
Verónica Mixão, Ester Saus, Antonio Perez Hansen, Cornelia Lass-Florl, Toni Gabaldon
Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: Diutina rugosa (syn. Candida rugosa) and Trichomonascus ciferrii (syn. Candida ciferrii). G3 (Bethesda, Md.) 9 (12) (2019)
Ester Saus, Jesse R Willis, Leszek P Pryszcz, Ahmed Hafez, Carlos Llorens, Heinz Himmelbauer, Toni Gabaldon
nextPARS: parallel probing of RNA structures in Illumina. RNA (New York, N.Y.) 24 (4) (2018)
Toni Gabaldon, Cécile Fairhead
Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal. Current genetics 65 (1) (2018)
Toni Gabaldon
Relative timing of mitochondrial endosymbiosis and the "pre-mitochondrial symbioses" hypothesis. IUBMB life 70 (12) (2018)
Aimilia A Stavrou, Verónica Mixão, Teun Boekhout, Toni Gabaldon
Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications. Yeast (Chichester, England) 35 (6) (2018)
Miguel A Naranjo-Ortíz, Silvia Rodríguez-Píres, Rosario Torres, Antonieta De Cal, Josep Usall, Toni Gabaldon
Genome Sequence of the Brown Rot Fungal Pathogen Monilinia laxa. Genome announcements 6 (17) (2018)
Jesse R Willis, Pedro González-Torres, Alexandros A Pittis, Luis A Bejarano, Luca Cozzuto, Nuria Andreu-Somavilla, Miriam Alloza-Trabado, Antonia Valentín, Ewa Ksiezopolska, Carlos Company, Harris Onywera, Magda Montfort, Antonio Hermoso, Susana Iraola-Guzmán, Ester Saus, Annick Labeeuw, Carlo Carolis, Jochen Hecht, Julia Ponomarenko, Toni Gabaldon
Citizen science charts two major "stomatotypes" in the oral microbiome of adolescents and reveals links with habits and drinking water composition. Microbiome 6 (1) (2018)
Verónica Mixão, Toni Gabaldon
Hybridization and emergence of virulence in opportunistic human yeast pathogens. Yeast (Chichester, England) 35 (1) (2017)
Maite Echeverz, Begoña García, Amaia Sabalza, Jaione Valle, Toni Gabaldon, Cristina Solano, Iñigo Lasa
Lack of the PGA exopolysaccharide in Salmonella as an adaptive trait for survival in the host. PLoS genetics 13 (5) (2017)
Igor Zeman, Martina Neboháčová, Gabriela Gérecová, Kornélia Katonová, Eva Jánošíková, Michaela Jakúbková, Ivana Centárová, Ivana Dunčková, L'ubomír Tomáška, Leszek P Pryszcz, Toni Gabaldon, Jozef Nosek
Mitochondrial Carriers Link the Catabolism of Hydroxyaromatic Compounds to the Central Metabolism in Candida parapsilosis. G3 (Bethesda, Md.) 6 (12) (2016)
Riccardo Aversano, Felice Contaldi, Maria Raffaella Ercolano, Valentina Grosso, Massimo Iorizzo, Filippo Tatino, Luciano Xumerle, Alessandra Dal Molin, Carla Avanzato, Alberto Ferrarini, Massimo Delledonne, Walter Sanseverino, Riccardo Aiese Cigliano, Salvador Capella-Gutierrez, Toni Gabaldon, Luigi Frusciante, James M Bradeen, Domenico Carputo
The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives. The Plant cell 27 (4) (2015)

Toni Gabaldon.css-eqlu8i{font-size:small;padding-left:4px;} (Toni Gabaldón, T Gabaldón)

Publication Activity (10 Years)

Top Topics

Top Venues

Toni Gabaldon (Toni Gabaldón, T Gabaldón)