Yujin Hoshida

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 33

Top Topics

High Throughput Sequencing

Monoclonal Antibody

Immune Response

Top Venues

Nature communications

Science translational medicine

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

David Hsiehchen, Muhammad S Beg, Radhika Kainthla, Jay Lohrey, Syed M Kazmi, Leticia Khosama, Mary Claire Maxwell, Heather Kline, Courtney Katz, Asim Hassan, Naoto Kubota, Ellen Siglinsky, Anil K Pillai, Hagop Youssoufian, Colleen Mockbee, Kerry Culm, Mark Uhlik, Laura Benjamin, Rolf A Brekken, Chul Ahn, Amit G Singal, Hao Zhu, Yujin Hoshida, Adam C Yopp
The phosphatidylserine targeting antibody bavituximab plus pembrolizumab in unresectable hepatocellular carcinoma: a phase 2 trial. Nature communications 15 (1) (2024)
David Hsiehchen, Muhammad S Beg, Radhika Kainthla, Jay Lohrey, Syed M Kazmi, Leticia Khosama, Mary Claire Maxwell, Heather Kline, Courtney Katz, Asim Hassan, Naoto Kubota, Ellen Siglinsky, Anil K Pillai, Hagop Youssoufian, Colleen Mockbee, Kerry Culm, Mark Uhlik, Laura Benjamin, Rolf A Brekken, Chul Ahn, Amit G Singal, Hao Zhu, Yujin Hoshida, Adam C Yopp
The phosphatidylserine targeting antibody bavituximab plus pembrolizumab in unresectable hepatocellular carcinoma: a phase 2 trial. Nature communications 15 (1) (2024)
David Hsiehchen, Muhammad S Beg, Radhika Kainthla, Jay Lohrey, Syed M Kazmi, Leticia Khosama, Mary Claire Maxwell, Heather Kline, Courtney Katz, Asim Hassan, Naoto Kubota, Ellen Siglinsky, Anil K Pillai, Hagop Youssoufian, Colleen Mockbee, Kerry Culm, Mark Uhlik, Laura Benjamin, Rolf A Brekken, Chul Ahn, Amit G Singal, Hao Zhu, Yujin Hoshida, Adam C Yopp
The phosphatidylserine targeting antibody bavituximab plus pembrolizumab in unresectable hepatocellular carcinoma: a phase 2 trial. Nature communications 15 (1) (2024)
David Hsiehchen, Muhammad S Beg, Radhika Kainthla, Jay Lohrey, Syed M Kazmi, Leticia Khosama, Mary Claire Maxwell, Heather Kline, Courtney Katz, Asim Hassan, Naoto Kubota, Ellen Siglinsky, Anil K Pillai, Hagop Youssoufian, Colleen Mockbee, Kerry Culm, Mark Uhlik, Laura Benjamin, Rolf A Brekken, Chul Ahn, Amit G Singal, Hao Zhu, Yujin Hoshida, Adam C Yopp
The phosphatidylserine targeting antibody bavituximab plus pembrolizumab in unresectable hepatocellular carcinoma: a phase 2 trial. Nature communications 15 (1) (2024)
Shijia Zhu, Naoto Kubota, Shidan Wang, Tao Wang, Guanghua Xiao, Yujin Hoshida
STIE: Single-cell level deconvolution, convolution, and clustering in in situ capturing-based spatial transcriptomics. Nature communications 15 (1) (2024)
Atish Mukherji, Frank Jühling, Yogy Simanjuntak, Emilie Crouchet, Fabio Del Zompo, Yuji Teraoka, Alexandre Haller, Philippe Baltzinger, Soumith Paritala, Fahmida Rasha, Naoto Fujiwara, Cloé Gadenne, Nevena Slovic, Marine A Oudot, Sarah C Durand, Clara Ponsolles, Catherine Schuster, Xiaodong Zhuang, Jacinta Holmes, Ming-Lun Yeh, Hiromi Abe-Chayama, Mathias F Heikenwälder, Angelo Sangiovanni, Massimo Iavarone, Massimo Colombo, Steven K H Foung, Jane A McKeating, Irwin Davidson, Ming-Lung Yu, Raymond T Chung, Yujin Hoshida, Kazuaki Chayama, Joachim Lupberger, Thomas F Baumert
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection. Nature communications 15 (1) (2024)
Shijia Zhu, Naoto Kubota, Shidan Wang, Tao Wang, Guanghua Xiao, Yujin Hoshida
STIE: Single-cell level deconvolution, convolution, and clustering in in situ capturing-based spatial transcriptomics. Nature communications 15 (1) (2024)
David Hsiehchen, Muhammad S Beg, Radhika Kainthla, Jay Lohrey, Syed M Kazmi, Leticia Khosama, Mary Claire Maxwell, Heather Kline, Courtney Katz, Asim Hassan, Naoto Kubota, Ellen Siglinsky, Anil K Pillai, Hagop Youssoufian, Colleen Mockbee, Kerry Culm, Mark Uhlik, Laura Benjamin, Rolf A Brekken, Chul Ahn, Amit G Singal, Hao Zhu, Yujin Hoshida, Adam C Yopp
The phosphatidylserine targeting antibody bavituximab plus pembrolizumab in unresectable hepatocellular carcinoma: a phase 2 trial. Nature communications 15 (1) (2024)
Zhuoyu Wen, Yu-Hsuan Lin, Shidan Wang, Naoto Fujiwara, Ruichen Rong, Kevin W Jin, Donghan M Yang, Bo Yao, Shengjie Yang, Tao Wang, Yang Xie, Yujin Hoshida, Hao Zhu, Guanghua Xiao
Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images. Genes 14 (4) (2023)
Ilgen Mender, Silvia Siteni, Summer Barron, Ann Marie Flusche, Naoto Kubota, Chunhua Yu, Crystal Cornelius, Enzo Tedone, Mazvita Maziveyi, Anthony Grichuk, Niranjan Venkateswaran, Maralice Conacci-Sorrell, Yujin Hoshida, Rui Kang, Daolin Tang, Sergei Gryaznov, Jerry W Shay
Activating an Adaptive Immune Response with a Telomerase-mediated Telomere Targeting Therapeutic in Hepatocellular Carcinoma. Molecular cancer therapeutics (2023)
Zhuoyu Wen, Yu-Hsuan Lin, Shidan Wang, Naoto Fujiwara, Ruichen Rong, Kevin W Jin, Donghan M Yang, Bo Yao, Shengjie Yang, Tao Wang, Yang Xie, Yujin Hoshida, Hao Zhu, Guanghua Xiao
Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images. Genes 14 (4) (2023)
Sandra Santasusagna, Shijia Zhu, Vijayakumar Jawalagatti, Marc Carceles-Cordon, Adam Ertel, Saioa Garcia-Longarte, Won-Min Song, Naoto Fujiwara, Peiyao Li, Isabel Mendizabal, Daniel P Petrylak, William Kevin Kelly, E Premkumar Reddy, Liguo Wang, Matthew J Schiewer, Amaia Lujambio, Robert Jeffrey Karnes, Beatrice Knudsen, Carlos Cordon-Cardo, Haidong Dong, Zhenlin Huang, Arkaitz Carracedo, Yujin Hoshida, Veronica Rodriguez-Bravo, Josep Domingo-Domenech
Master transcription factor reprograming unleashes selective translation promoting castration resistance and immune evasion in lethal prostate cancer. Cancer discovery (2023)
Zhuoyu Wen, Yu-Hsuan Lin, Shidan Wang, Naoto Fujiwara, Ruichen Rong, Kevin W Jin, Donghan M Yang, Bo Yao, Shengjie Yang, Tao Wang, Yang Xie, Yujin Hoshida, Hao Zhu, Guanghua Xiao
Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images. Genes 14 (4) (2023)
Zhuoyu Wen, Yu-Hsuan Lin, Shidan Wang, Naoto Fujiwara, Ruichen Rong, Kevin W Jin, Donghan M Yang, Bo Yao, Shengjie Yang, Tao Wang, Yang Xie, Yujin Hoshida, Hao Zhu, Guanghua Xiao
Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images. Genes 14 (4) (2023)
Natascha Roehlen, Antonio Saviano, Houssein El Saghire, Emilie Crouchet, Zeina Nehme, Fabio Del Zompo, Frank Jühling, Marine A Oudot, Sarah C Durand, François H T Duong, Sara Cherradi, Victor Gonzalez Motos, Nuno Almeida, Clara Ponsolles, Laura Heydmann, Tessa Ostyn, Antonin Lallement, Patrick Pessaux, Emanuele Felli, Andrea Cavalli, Jacopo Sgrignani, Christine Thumann, Olga Koutsopoulos, Bryan C Fuchs, Yujin Hoshida, Maike Hofmann, Mogens Vyberg, Birgitte Martine Viuff, Elisabeth D Galsgaard, Greg Elson, Alberto Toso, Markus Meyer, Roberto Iacone, Tamás Schweighoffer, Geoffrey Teixeira, Solange Moll, Claudio deVito, Tania A Roskams, Irwin Davidson, Danijela Heide, Mathias F Heikenwälder, Mirjam B Zeisel, Joachim Lupberger, Laurent Mailly, Catherine Schuster, Thomas F Baumert
A monoclonal antibody targeting nonjunctional claudin-1 inhibits fibrosis in patient-derived models by modulating cell plasticity. Science translational medicine 14 (676) (2022)
Aveline Filliol, Yoshinobu Saito, Bindu Nair, Dianne H Dapito, Le-Xing Yu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Silvia Affo, Naoto Fujiwara, Hua Su, Qiuyan Sun, Thomas M Savage, John R Wilson-Kanamori, Jorge M Caviglia, LiKang Chin, Dongning Chen, Xiaobo Wang, Stefano Caruso, Jin Ku Kang, Amit Dipak Amin, Sebastian J Wallace, Ross Dobie, Deqi Yin, Oscar M Rodriguez-Fiallos, Chuan Yin, Adam Mehal, Benjamin Izar, Richard A Friedman, Rebecca G Wells, Utpal B Pajvani, Yujin Hoshida, Helen E Remotti, Nicholas Arpaia, Jessica Zucman-Rossi, Michael Karin, Neil Cowan Henderson, Ira Tabas, Robert F Schwabe
Opposing roles of hepatic stellate cell subpopulations in hepatocarcinogenesis. Nature 610 (7931) (2022)
Natascha Roehlen, Antonio Saviano, Houssein El Saghire, Emilie Crouchet, Zeina Nehme, Fabio Del Zompo, Frank Jühling, Marine A Oudot, Sarah C Durand, François H T Duong, Sara Cherradi, Victor Gonzalez Motos, Nuno Almeida, Clara Ponsolles, Laura Heydmann, Tessa Ostyn, Antonin Lallement, Patrick Pessaux, Emanuele Felli, Andrea Cavalli, Jacopo Sgrignani, Christine Thumann, Olga Koutsopoulos, Bryan C Fuchs, Yujin Hoshida, Maike Hofmann, Mogens Vyberg, Birgitte Martine Viuff, Elisabeth D Galsgaard, Greg Elson, Alberto Toso, Markus Meyer, Roberto Iacone, Tamás Schweighoffer, Geoffrey Teixeira, Solange Moll, Claudio deVito, Tania A Roskams, Irwin Davidson, Danijela Heide, Mathias F Heikenwälder, Mirjam B Zeisel, Joachim Lupberger, Laurent Mailly, Catherine Schuster, Thomas F Baumert
A monoclonal antibody targeting nonjunctional claudin-1 inhibits fibrosis in patient-derived models by modulating cell plasticity. Science translational medicine 14 (676) (2022)
Natascha Roehlen, Antonio Saviano, Houssein El Saghire, Emilie Crouchet, Zeina Nehme, Fabio Del Zompo, Frank Jühling, Marine A Oudot, Sarah C Durand, François H T Duong, Sara Cherradi, Victor Gonzalez Motos, Nuno Almeida, Clara Ponsolles, Laura Heydmann, Tessa Ostyn, Antonin Lallement, Patrick Pessaux, Emanuele Felli, Andrea Cavalli, Jacopo Sgrignani, Christine Thumann, Olga Koutsopoulos, Bryan C Fuchs, Yujin Hoshida, Maike Hofmann, Mogens Vyberg, Birgitte Martine Viuff, Elisabeth D Galsgaard, Greg Elson, Alberto Toso, Markus Meyer, Roberto Iacone, Tamás Schweighoffer, Geoffrey Teixeira, Solange Moll, Claudio deVito, Tania A Roskams, Irwin Davidson, Danijela Heide, Mathias F Heikenwälder, Mirjam B Zeisel, Joachim Lupberger, Laurent Mailly, Catherine Schuster, Thomas F Baumert
A monoclonal antibody targeting nonjunctional claudin-1 inhibits fibrosis in patient-derived models by modulating cell plasticity. Science translational medicine 14 (676) (2022)
Yi-Te Lee, Naoto Fujiwara, Ju Dong Yang, Yujin Hoshida
Risk stratification and early detection biomarkers for precision HCC screening. Hepatology (Baltimore, Md.) (2022)
Naoto Fujiwara, Naoto Kubota, Emilie Crouchet, Bhuvaneswari Koneru, Cesia A Marquez, Arun K Jajoriya, Gayatri Panda, Tongqi Qian, Shijia Zhu, Nicolas Goossens, Xiaochen Wang, Shuang Liang, Zhenyu Zhong, Christopher Song, Bachir A Taouli, Myron E Schwartz, Maria Isabel Fiel, Amit G Singal, Jorge A Marrero, Austin J Fobar, Neehar D Parikh, Indu Raman, Quan-Zhen Li, Masataka Taguri, Atsushi Ono, Hiroshi Aikata, Takashi Nakahara, Hayato Nakagawa, Yuki Matsushita, Ryosuke Tateishi, Kazuhiko Koike, Masahiro Kobayashi, Takaaki Higashi, Shigeki Nakagawa, Yo-Ichi Yamashita, Toru Beppu, Hideo Baba, Hiromitsu Kumada, Kazuaki Chayama, Thomas F Baumert, Yujin Hoshida
Molecular signatures of long-term hepatocellular carcinoma risk in nonalcoholic fatty liver disease. Science translational medicine 14 (650) (2022)
Emilie Crouchet, Simonetta Bandiera, Naoto Fujiwara, Shen Li, Hussein El Saghire, Mirian Fernández-Vaquero, Tobias Riedl, Xiaochen Sun, Hadassa Hirschfield, Frank Jühling, Shijia Zhu, Natascha Roehlen, Clara Ponsolles, Laura Heydmann, Antonio Saviano, Tongqi Qian, Anu Venkatesh, Joachim Lupberger, Thomas F Baumert, Mozhdeh Sojoodi, Marine A Oudot, François H T Duong, Ricard Masia, Lan Wei, Christine Thumann, Sarah C Durand, Victor González-Motos, Danijela Heide, Jenny Hetzer, Shigeki Nakagawa, Atsushi Ono, Won-Min Song, Takaaki Higashi, Roberto Sanchez, Rosa S Kim, C Billie Bian, Karun Kiani, Tom Croonenborghs, Aravind Subramanian, Raymond T Chung, Beate K Straub, Detlef Schuppan, Maliki Ankavay, Laurence Cocquerel, Evelyne Schaeffer, Nicolas Goossens, Anna P Koh, Milind Mahajan, Venugopalan D Nair, Ganesh Gunasekaran, Myron E Schwartz, Nabeel El-Bardeesy, Alex K Shalek, Orit Rozenblatt-Rosen, Aviv Regev, Emanuele Felli, Patrick Pessaux, Kenneth K Tanabe, Mathias F Heikenwälder, Catherine Schuster, Nathalie Pochet, Mirjam B Zeisel, Bryan C Fuchs, Yujin Hoshida, Thomas F Baumert
A human liver cell-based system modeling a clinical prognostic liver signature for therapeutic discovery. Nature communications 12 (1) (2021)
Naoto Kubota, Naoto Fujiwara, Yujin Hoshida
Clinical and Molecular Prediction of Hepatocellular Carcinoma Risk. Journal of clinical medicine 9 (12) (2020)
Naoto Fujiwara, Tongqi Qian, Bhuvaneswari Koneru, Yujin Hoshida
Omics-derived hepatocellular carcinoma risk biomarkers for precision care of chronic liver diseases. Hepatology research : the official journal of the Japan Society of Hepatology 50 (7) (2020)
Carla Eller, Laura Heydmann, Che C Colpitts, Houssein El Saghire, Frederica Piccioni, Frank Jühling, Karim Majzoub, Caroline Pons, Charlotte Bach, Julie Lucifora, Joachim Lupberger, Michael Nassal, Glenn S Cowley, Naoto Fujiwara, Sen-Yung Hsieh, Yujin Hoshida, Emanuele Felli, Patrick Pessaux, Camille Sureau, Catherine Schuster, David E Root, Thomas F Baumert, Thomas F Baumert
A genome-wide gain-of-function screen identifies CDKN2C as a HBV host factor. Nature communications 11 (1) (2020)
Shen Li, Antonio Saviano, Derek J Erstad, Yujin Hoshida, Bryan C Fuchs, Thomas F Baumert, Kenneth K Tanabe
Risk Factors, Pathogenesis, and Strategies for Hepatocellular Carcinoma Prevention: Emphasis on Secondary Prevention and Its Translational Challenges. Journal of clinical medicine 9 (12) (2020)
Thomas F Baumert, Yujin Hoshida
Addressing the Challenges of Hepatitis C Cure and Persistent Risk of Hepatocellular Carcinoma. Viruses 11 (5) (2019)
Kenichiro Enooku, Hayato Nakagawa, Naoto Fujiwara, Mayuko Kondo, Tatsuya Minami, Yujin Hoshida, Junji Shibahara, Ryosuke Tateishi, Kazuhiko Koike
Altered serum acylcarnitine profile is associated with the status of nonalcoholic fatty liver disease (NAFLD) and NAFLD-related hepatocellular carcinoma. Scientific reports 9 (1) (2019)
Hadassa Hirschfield, C Billie Bian, Takaaki Higashi, Shigeki Nakagawa, Tizita Z Zeleke, Venugopalan D Nair, Bryan C Fuchs, Yujin Hoshida
In vitro modeling of hepatocellular carcinoma molecular subtypes for anti-cancer drug assessment. Experimental & molecular medicine 50 (1) (2018)
Youngmin A Lee, Luke A Noon, Kemal M Akat, Maria D Ybanez, Ting-Fang Lee, Marie-Luise Berres, Naoto Fujiwara, Nicolas Goossens, Hsin-I Chou, Fatemeh P Parvin-Nejad, Bilon Khambu, Elisabeth G M Kramer, Ronald Gordon, Cathie Pfleger, Doris Germain, Gareth R John, Kirk N Campbell, Zhenyu Yue, Xiao-Ming Yin, Ana Maria Cuervo, Mark J Czaja, M Isabel Fiel, Yujin Hoshida, Scott L Friedman
Autophagy is a gatekeeper of hepatic differentiation and carcinogenesis by controlling the degradation of Yap. Nature communications 9 (1) (2018)
Stefanie J Hectors, Mathilde Wagner, Octavia Bane, Cecilia Besa, Sara Lewis, Romain Remark, Nelson Chen, M Isabel Fiel, Hongfa Zhu, Sacha Gnjatic, Miriam Merad, Yujin Hoshida, Bachir Taouli
Quantification of hepatocellular carcinoma heterogeneity with multiparametric magnetic resonance imaging. Scientific reports 7 (1) (2017)
Svenja Sydor, Paul Manka, Jan Best, Sami Jafoui, Jan-Peter Sowa, Miguel Eugenio Zoubek, Virginia Hernandez-Gea, Francisco Javier Cubero, Julia Kälsch, Diana Vetter, Maria Isabel Fiel, Yujin Hoshida, C Billie Bian, Leonard J Nelson, Han Moshage, Klaas Nico Faber, Andreas Paul, Hideo A Baba, Guido Gerken, Scott L Friedman, Ali Canbay, Lars P Bechmann
Krüppel-like factor 6 is a transcriptional activator of autophagy in acute liver injury. Scientific reports 7 (1) (2017)
Ruchi Bansal, Shigeki Nakagawa, Saleh Yazdani, Joop van Baarlen, Anu Venkatesh, Anna P Koh, Won-Min Song, Nicolas Goossens, Hideo Watanabe, Mary B Beasley, Charles A Powell, Gert Storm, Naftali Kaminski, Harry van Goor, Scott L Friedman, Yujin Hoshida, Jai Prakash
Integrin alpha 11 in the regulation of the myofibroblast phenotype: implications for fibrotic diseases. Experimental & molecular medicine 49 (11) (2017)
Shlomi Finkin, Detian Yuan, Ilan Stein, Koji Taniguchi, Achim Weber, Kristian Unger, Jeffrey L Browning, Nicolas Goossens, Shigeki Nakagawa, Ganesh Gunasekaran, Myron E Schwartz, Masahiro Kobayashi, Hiromitsu Kumada, Michael Berger, Orit Pappo, Klaus Rajewsky, Yujin Hoshida, Michael Karin, Mathias Heikenwalder, Yinon Ben-Neriah, Eli Pikarsky
Ectopic lymphoid structures function as microniches for tumor progenitor cells in hepatocellular carcinoma. Nature immunology 16 (12) (2015)