Jonathan Samuel Gootenberg (Jonathan S Gootenberg)

Loop profile Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 34

Top Topics

Artificial Intelligence

Top Venues

Science (New York, N.Y.)

bioRxiv : the preprint server for biology

Nature reviews. Molecular cell biology

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Lukas Villiger, Julia Joung, Luke Koblan, Jonathan S Weissman, Omar O Abudayyeh, Jonathan Samuel Gootenberg
CRISPR technologies for genome, epigenome and transcriptome editing. Nature reviews. Molecular cell biology (2024)
Lukas Villiger, Julia Joung, Luke Koblan, Jonathan S Weissman, Omar O Abudayyeh, Jonathan Samuel Gootenberg
CRISPR technologies for genome, epigenome and transcriptome editing. Nature reviews. Molecular cell biology (2024)
Lukas Villiger, Julia Joung, Luke Koblan, Jonathan S Weissman, Omar O Abudayyeh, Jonathan Samuel Gootenberg
CRISPR technologies for genome, epigenome and transcriptome editing. Nature reviews. Molecular cell biology 25 (6) (2024)
Cian Schmitt-Ulms, Alisan Kayabolen, Marcos Manero-Carranza, Nathan Zhou, Keira Donnelly, Sabrina Pia Nuccio, Kazuki Kato, Hiroshi Nishimasu, Jonathan Samuel Gootenberg, Omar O Abudayyeh
Programmable RNA writing with trans-splicing. bioRxiv : the preprint server for biology (2024)
Omar O Abudayyeh, Jonathan Samuel Gootenberg
Programmable biology through artificial intelligence: from nucleic acids to proteins to cells. Nature methods 21 (8) (2024)
Lukas Villiger, Julia Joung, Luke Koblan, Jonathan S Weissman, Omar O Abudayyeh, Jonathan Samuel Gootenberg
CRISPR technologies for genome, epigenome and transcriptome editing. Nature reviews. Molecular cell biology 25 (6) (2024)
Kaiyi Jiang, Zhaoqing Yan, Matteo Di Bernardo, Samantha R Sgrizzi, Lukas Villiger, Alisan Kayabolen, Byungji Kim, Josephine K Carscadden, Masahiro Hiraizumi, Hiroshi Nishimasu, Jonathan Samuel Gootenberg, Omar O Abudayyeh
Rapid protein evolution by few-shot learning with a protein language model. bioRxiv : the preprint server for biology (2024)
Cian Schmitt-Ulms, Alisan Kayabolen, Marcos Manero-Carranza, Nathan Zhou, Keira Donnelly, Sabrina Pia Nuccio, Kazuki Kato, Hiroshi Nishimasu, Jonathan Samuel Gootenberg, Omar O Abudayyeh
Programmable RNA writing with trans-splicing. bioRxiv : the preprint server for biology (2024)
Lukas Villiger, Julia Joung, Luke Koblan, Jonathan S Weissman, Omar O Abudayyeh, Jonathan Samuel Gootenberg
CRISPR technologies for genome, epigenome and transcriptome editing. Nature reviews. Molecular cell biology (2024)
Kaiyi Jiang, Zhaoqing Yan, Matteo Di Bernardo, Samantha R Sgrizzi, Lukas Villiger, Alisan Kayabolen, Byungji Kim, Josephine K Carscadden, Masahiro Hiraizumi, Hiroshi Nishimasu, Jonathan Samuel Gootenberg, Omar O Abudayyeh
Rapid protein evolution by few-shot learning with a protein language model. bioRxiv : the preprint server for biology (2024)
Rahul S Vedula, Hannah Q Karp, Jeremy Koob, Felicia Lim, Jacqueline S Garcia, Eric S Winer, Marlise R Luskin, Gabriel Ghiaur, Annette S Kim, Lan W Beppu, Olga Sala-Torra, Jerald P Radich, Jonathan Samuel Gootenberg, Omar Abudayyeh, Feng Zhang, R Coleman Lindsley
CRISPR-based rapid molecular diagnostic tests for fusion-driven leukemias. Blood (2024)
Omar O Abudayyeh, Jonathan Samuel Gootenberg
Programmable biology through artificial intelligence: from nucleic acids to proteins to cells. Nature methods 21 (8) (2024)
Lukas Villiger, Julia Joung, Luke Koblan, Jonathan S Weissman, Omar O Abudayyeh, Jonathan Samuel Gootenberg
Author Correction: CRISPR technologies for genome, epigenome and transcriptome editing. Nature reviews. Molecular cell biology (2024)
Cian Schmitt-Ulms, Alisan Kayabolen, Marcos Manero-Carranza, Nathan Zhou, Keira Donnelly, Sabrina Pia Nuccio, Kazuki Kato, Hiroshi Nishimasu, Jonathan Samuel Gootenberg, Omar O Abudayyeh
Programmable RNA writing with trans-splicing. bioRxiv : the preprint server for biology (2024)
Kaiyi Jiang, Zhaoqing Yan, Matteo Di Bernardo, Samantha R Sgrizzi, Lukas Villiger, Alisan Kayabolen, Byungji Kim, Josephine K Carscadden, Masahiro Hiraizumi, Hiroshi Nishimasu, Jonathan Samuel Gootenberg, Omar O Abudayyeh
Rapid protein evolution by few-shot learning with a protein language model. bioRxiv : the preprint server for biology (2024)
Kaiyi Jiang, Justin Lim, Samantha Sgrizzi, Michael Trinh, Alisan Kayabolen, Natalya Yutin, Eugene V Koonin, Omar O Abudayyeh, Jonathan Samuel Gootenberg
Programmable RNA-guided endonucleases are widespread in eukaryotes and their viruses. bioRxiv : the preprint server for biology (2023)
Kaiyi Jiang, Justin Lim, Samantha R Sgrizzi, Michael Trinh, Alisan Kayabolen, Natalya Yutin, Weidong Bao, Kazuki Kato, Eugene V Koonin, Jonathan Samuel Gootenberg, Omar O Abudayyeh
Programmable RNA-guided DNA endonucleases are widespread in eukaryotes and their viruses. Science advances 9 (39) (2023)
Kaiyi Jiang, Jeremy Koob, Xi Dawn Chen, Rohan N Krajeski, Yifan Zhang, Verena Volf, Wenyuan Zhou, Samantha R Sgrizzi, Lukas Villiger, Jonathan Samuel Gootenberg, Fei Chen, Omar O Abudayyeh
Programmable eukaryotic protein synthesis with RNA sensors by harnessing ADAR. Nature biotechnology (2022)
Jonathan Strecker, F Esra Demircioglu, David Li, Guilhem Faure, Max E Wilkinson, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Hiroshi Nishimasu, Rhiannon K Macrae, Feng Zhang
RNA-activated protein cleavage with a CRISPR-associated endopeptidase. Science (New York, N.Y.) 378 (6622) (2022)
Kazuki Kato, Sae Okazaki, Cian Schmitt-Ulms, Kaiyi Jiang, Wenyuan Zhou, Junichiro Ishikawa, Yukari Isayama, Shungo Adachi, Tomohiro Nishizawa, Kira S Makarova, Eugene V Koonin, Omar O Abudayyeh, Jonathan Samuel Gootenberg, Hiroshi Nishimasu
RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease. Science (New York, N.Y.) 378 (6622) (2022)
Matthew T N Yarnall, Eleonora I Ioannidi, Cian Schmitt-Ulms, Rohan N Krajeski, Justin Lim, Lukas Villiger, Wenyuan Zhou, Kaiyi Jiang, Sofya K Garushyants, Nathaniel Roberts, Liyang Zhang, Christopher A Vakulskas, John A Walker, Anastasia P Kadina, Adrianna E Zepeda, Kevin Holden, Hong Ma, Jun Xie, Guangping Gao, Lander Foquet, Greg Bial, Sara K Donnelly, Yoshinari Miyata, Daniel R Radiloff, Jordana M Henderson, Andrew Ujita, Omar O Abudayyeh, Jonathan Samuel Gootenberg
Drag-and-drop genome insertion of large sequences without double-strand DNA cleavage using CRISPR-directed integrases. Nature biotechnology (2022)
Ahsen Özcan, Rohan Krajeski, Eleonora Ioannidi, Brennan Lee, Apolonia Gardner, Kira S Makarova, Eugene V Koonin, Omar O Abudayyeh, Jonathan Samuel Gootenberg
Programmable RNA targeting with the single-protein CRISPR effector Cas7-11. Nature 597 (7878) (2021)
Michael M Kaminski, Omar O Abudayyeh, Jonathan Samuel Gootenberg, Feng Zhang, James J Collins
CRISPR-based diagnostics. Nature biomedical engineering 5 (7) (2021)
Maturada Patchsung, Krittapas Jantarug, Archiraya Pattama, Kanokpol Aphicho, Surased Suraritdechachai, Piyachat Meesawat, Khomkrit Sappakhaw, Nattawat Leelahakorn, Theerawat Ruenkam, Thanakrit Wongsatit, Niracha Athipanyasilp, Bhumrapee Eiamthong, Benya Lakkanasirorat, Thitima Phoodokmai, Nootaree Niljianskul, Danaya Pakotiprapha, Sittinan Chanarat, Aimorn Homchan, Ruchanok Tinikul, Philaiwarong Kamutira, Kochakorn Phiwkaow, Sahachat Soithongcharoen, Chadaporn Kantiwiriyawanitch, Vinutsada Pongsupasa, Duangthip Trisrivirat, Juthamas Jaroensuk, Thanyaporn Wongnate, Somchart Maenpuen, Pimchai Chaiyen, Sirichai Kamnerdnakta, Jirawat Swangsri, Suebwong Chuthapisith, Yongyut Sirivatanauksorn, Chutikarn Chaimayo, Ruengpung Sutthent, Wannee Kantakamalakul, Julia Joung, Alim Ladha, Xin Jin, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Feng Zhang, Navin Horthongkham, Chayasith Uttamapinant
Clinical validation of a Cas13-based assay for the detection of SARS-CoV-2 RNA. Nature biomedical engineering 4 (12) (2020)
Omar O Abudayyeh, Jonathan Samuel Gootenberg, Brian Franklin, Jeremy Koob, Max J Kellner, Alim Ladha, Julia Joung, Paul Kirchgatterer, David B T Cox, Feng Zhang
A cytosine deaminase for programmable single-base RNA editing. Science (New York, N.Y.) 365 (6451) (2019)
Max J Kellner, Jeremy G Koob, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Feng Zhang
SHERLOCK: nucleic acid detection with CRISPR nucleases. Nature protocols 14 (10) (2019)
Josh Tycko, Luis A Barrera, Nicholas C Huston, Ari E Friedland, Xuebing Wu, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Vic E Myer, Christopher J Wilson, Patrick D Hsu
Publisher Correction: Pairwise library screen systematically interrogates Staphylococcus aureus Cas9 specificity in human cells. Nature communications 9 (1) (2018)
Jonathan Samuel Gootenberg, Omar O Abudayyeh, Max J Kellner, Julia Joung, James J Collins, Feng Zhang
Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6. Science (New York, N.Y.) 360 (6387) (2018)
Josh Tycko, Luis A Barrera, Nicholas C Huston, Ari E Friedland, Xuebing Wu, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Vic E Myer, Christopher J Wilson, Patrick D Hsu
Pairwise library screen systematically interrogates Staphylococcus aureus Cas9 specificity in human cells. Nature communications 9 (1) (2018)
Hiroshi Nishimasu, Xi Shi, Soh Ishiguro, Linyi Gao, Seiichi Hirano, Sae Okazaki, Taichi Noda, Omar O Abudayyeh, Jonathan Samuel Gootenberg, Hideto Mori, Seiya Oura, Benjamin Holmes, Mamoru Tanaka, Motoaki Seki, Hisato Hirano, Hiroyuki Aburatani, Ryuichiro Ishitani, Masahito Ikawa, Nozomu Yachie, Feng Zhang, Osamu Nureki
Engineered CRISPR-Cas9 nuclease with expanded targeting space. Science (New York, N.Y.) 361 (6408) (2018)
Cameron A Myhrvold, Catherine A Freije, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Hayden C Metsky, Ann F Durbin, Max J Kellner, Amanda L Tan, Lauren M Paul, Leda A Parham, Kimberly F Garcia, Kayla G Barnes, Bridget Chak, Adriano Mondini, Mauricio Lacerda Nogueira, Sharon Isern, Scott F Michael, Ivette Lorenzana, Nathan L Yozwiak, Bronwyn L MacInnis, Irene Bosch, Lee Gehrke, Feng Zhang, Pardis C Sabeti
Field-deployable viral diagnostics using CRISPR-Cas13. Science (New York, N.Y.) 360 (6387) (2018)
Julia Joung, Silvana Konermann, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Randall J Platt, Mark D Brigham, Neville E Sanjana, Feng Zhang
Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening. Nature protocols 12 (4) (2017)
David B T Cox, Jonathan Samuel Gootenberg, Omar O Abudayyeh, Brian Franklin, Max J Kellner, Julia Joung, Feng Zhang
RNA editing with CRISPR-Cas13. Science (New York, N.Y.) 358 (6366) (2017)
Jonathan Samuel Gootenberg, Omar O Abudayyeh, Jeong Wook Lee, Patrick Essletzbichler, Aaron J Dy, Julia Joung, Vanessa Verdine, Nina Donghia, Nichole M Daringer, Catherine A Freije, Cameron A Myhrvold, Roby P Bhattacharyya, Jonathan Livny, Aviv Regev, Eugene V Koonin, Deborah T Hung, Pardis C Sabeti, James J Collins, Feng Zhang
Nucleic acid detection with CRISPR-Cas13a/C2c2. Science (New York, N.Y.) 356 (6336) (2017)