Jennifer E Van Eyk (Jennifer Van Eyk, Jenny E Van Eyk)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 90

Top Venues

Journal of proteome research

Nature communications

Circulation

Nature cancer

Cedars-Sinai Medical Center (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Cedars-Sinai Medical Center Jan 01 2014

United States

PHD :: Medicine and Pathology

Publications

Paul Marano, Kelly Mouapi, Andy Kim, Mitra Mastali, Irene van den Broek, Danica Manalo, Qin Fu, Susan C Cheng, Chrisandra L Shufelt, Brennan Spiegel, C Noel Bairey Merz, Jennifer E Van Eyk
Apolipoproteins Quantified Using Blood Volumetric Absorptive Microsampling and High-Throughput Mass Spectrometry for Risk Assessment in Ischemic Heart Disease. Circulation 149 (12) (2024)
Stanislav Tsitkov, Kelsey Valentine, Velina Kozareva, Aneesh Donde, Aaron Frank, Susan Lei, null null, Jennifer E Van Eyk, Steve Finkbeiner, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, Ernest Fraenkel
Disease related changes in ATAC-seq of iPSC-derived motor neuron lines from ALS patients and controls. Nature communications 15 (1) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Yuming Jiang, Daniel DeBord, Heidi Vitrac, Jordan Stewart, Ali Haghani, Jennifer E Van Eyk, Justyna Fert-Bober, Jesse G Meyer
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics? Journal of proteome research (2024)
Yuming Jiang, Daniel DeBord, Heidi Vitrac, Jordan Stewart, Ali Haghani, Jennifer E Van Eyk, Justyna Fert-Bober, Jesse G Meyer
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics? Journal of proteome research 23 (6) (2024)
Yuming Jiang, Daniel DeBord, Heidi Vitrac, Jordan Stewart, Ali Haghani, Jennifer E Van Eyk, Justyna Fert-Bober, Jesse G Meyer
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics? Journal of proteome research 23 (6) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Arsen Osipov, Ognjen Nikolic, Arkadiusz Gertych, Sarah Parker, Andrew Hendifar, Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R Ferrone, Lei Zheng, Jason H Moore, Warren Tourtellotte, Jennifer E Van Eyk, Dan Theodorescu
The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients. Nature cancer 5 (2) (2024)
Yuming Jiang, Daniel DeBord, Heidi Vitrac, Jordan Stewart, Ali Haghani, Jennifer E Van Eyk, Justyna Fert-Bober, Jesse G Meyer
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics? Journal of proteome research 23 (6) (2024)
Paul Marano, Kelly Mouapi, Andy Kim, Mitra Mastali, Irene van den Broek, Danica Manalo, Qin Fu, Susan C Cheng, Chrisandra L Shufelt, Brennan Spiegel, C Noel Bairey Merz, Jennifer E Van Eyk
Apolipoproteins Quantified Using Blood Volumetric Absorptive Microsampling and High-Throughput Mass Spectrometry for Risk Assessment in Ischemic Heart Disease. Circulation 149 (12) (2024)
Edgar E Nollet, Maike Schuldt, Vasco Sequeira, Aleksandra Binek, Thang V Pham, Stephan A C Schoonvelde, Mark Jansen, Bauke V Schomakers, Michel van Weeghel, Frederic M Vaz, Riekelt H L Houtkooper, Jennifer E Van Eyk, Connie R Jiménez, Michelle Michels, Kenneth C Bedi, Kenneth B Margulies, Cristobal G Dos Remedios, Diederik W D Kuster, Jolanda van der Velden
Integrating Clinical Phenotype With Multiomics Analyses of Human Cardiac Tissue Unveils Divergent Metabolic Remodeling in Genotype-Positive and Genotype-Negative Patients With Hypertrophic Cardiomyopathy. Circulation. Genomic and precision medicine 17 (3) (2024)
Bart Van Puyvelde, Christie L Hunter, Maxim Zhgamadze, Sudha Savant, Y Oliver Wang, Esthelle Hoedt, Koen Raedschelders, Matt Pope, Carissa A Huynh, V Krishnan Ramanujan, Warren Tourtellotte, Morteza Razavi, N Leigh Anderson, Geert Antoine Martens, Dieter Deforce, Qin Fu, Maarten Dhaenens, Jennifer E Van Eyk
Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification. Nature communications 15 (1) (2024)
Yuming Jiang, Daniel DeBord, Heidi Vitrac, Jordan Stewart, Ali Haghani, Jennifer E Van Eyk, Justyna Fert-Bober, Jesse G Meyer
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics? Journal of proteome research 23 (6) (2024)
Arsen Osipov, Ognjen Nikolic, Arkadiusz Gertych, Sarah Parker, Andrew Hendifar, Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R Ferrone, Lei Zheng, Jason H Moore, Warren Tourtellotte, Jennifer E Van Eyk, Dan Theodorescu
The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients. Nature cancer 5 (2) (2024)
Nathan G Hendricks, Santosh D Bhosale, Angel J Keoseyan, Josselin Ortiz, Aleksandr Stotland, Saeed Seyedmohammad, Chi D L Nguyen, Jonathan T Bui, Annie Moradian, Susan M Mockus, Jennifer E Van Eyk
An Inflection Point in High-Throughput Proteomics with Orbitrap Astral: Analysis of Biofluids, Cells, and Tissues. Journal of proteome research (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Bart Van Puyvelde, Christie L Hunter, Maxim Zhgamadze, Sudha Savant, Y Oliver Wang, Esthelle Hoedt, Koen Raedschelders, Matt Pope, Carissa A Huynh, V Krishnan Ramanujan, Warren Tourtellotte, Morteza Razavi, N Leigh Anderson, Geert Antoine Martens, Dieter Deforce, Qin Fu, Maarten Dhaenens, Jennifer E Van Eyk
Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification. Nature communications 15 (1) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Edgar E Nollet, Maike Schuldt, Vasco Sequeira, Aleksandra Binek, Thang V Pham, Stephan A C Schoonvelde, Mark Jansen, Bauke V Schomakers, Michel van Weeghel, Frederic M Vaz, Riekelt H L Houtkooper, Jennifer E Van Eyk, Connie R Jiménez, Michelle Michels, Kenneth C Bedi, Kenneth B Margulies, Cristobal G Dos Remedios, Diederik W D Kuster, Jolanda van der Velden
Integrating Clinical Phenotype With Multiomics Analyses of Human Cardiac Tissue Unveils Divergent Metabolic Remodeling in Genotype-Positive and Genotype-Negative Patients With Hypertrophic Cardiomyopathy. Circulation. Genomic and precision medicine 17 (3) (2024)
Paul Marano, Kelly Mouapi, Andy Kim, Mitra Mastali, Irene van den Broek, Danica Manalo, Qin Fu, Susan C Cheng, Chrisandra L Shufelt, Brennan Spiegel, C Noel Bairey Merz, Jennifer E Van Eyk
Apolipoproteins Quantified Using Blood Volumetric Absorptive Microsampling and High-Throughput Mass Spectrometry for Risk Assessment in Ischemic Heart Disease. Circulation 149 (12) (2024)
Oleg A Karpov, Aleksandr Stotland, Koen Raedschelders, Blandine Chazarin, Lizhuo Ai, Christopher I Murray, Jennifer E Van Eyk
Proteomics of the heart. Physiological reviews 104 (3) (2024)
Arsen Osipov, Ognjen Nikolic, Arkadiusz Gertych, Sarah Parker, Andrew Hendifar, Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R Ferrone, Lei Zheng, Jason H Moore, Warren Tourtellotte, Jennifer E Van Eyk, Dan Theodorescu
The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients. Nature cancer (2024)
Nathan G Hendricks, Santosh D Bhosale, Angel J Keoseyan, Josselin Ortiz, Aleksandr Stotland, Saeed Seyedmohammad, Chi D L Nguyen, Jonathan T Bui, Annie Moradian, Susan M Mockus, Jennifer E Van Eyk
An Inflection Point in High-Throughput Proteomics with Orbitrap Astral: Analysis of Biofluids, Cells, and Tissues. Journal of proteome research (2024)
Bart Van Puyvelde, Christie L Hunter, Maxim Zhgamadze, Sudha Savant, Y Oliver Wang, Esthelle Hoedt, Koen Raedschelders, Matt Pope, Carissa A Huynh, V Krishnan Ramanujan, Warren Tourtellotte, Morteza Razavi, N Leigh Anderson, Geert Antoine Martens, Dieter Deforce, Qin Fu, Maarten Dhaenens, Jennifer E Van Eyk
Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification. Nature communications 15 (1) (2024)
Edgar E Nollet, Maike Schuldt, Vasco Sequeira, Aleksandra Binek, Thang V Pham, Stephan A C Schoonvelde, Mark Jansen, Bauke V Schomakers, Michel van Weeghel, Frederic M Vaz, Riekelt H L Houtkooper, Jennifer E Van Eyk, Connie R Jiménez, Michelle Michels, Kenneth C Bedi, Kenneth B Margulies, Cristobal G Dos Remedios, Diederik W D Kuster, Jolanda van der Velden
Integrating Clinical Phenotype With Multiomics Analyses of Human Cardiac Tissue Unveils Divergent Metabolic Remodeling in Genotype-Positive and Genotype-Negative Patients With Hypertrophic Cardiomyopathy. Circulation. Genomic and precision medicine (2024)
Paul Marano, Kelly Mouapi, Andy Kim, Mitra Mastali, Irene van den Broek, Danica Manalo, Qin Fu, Susan C Cheng, Chrisandra L Shufelt, Brennan Spiegel, C Noel Bairey Merz, Jennifer E Van Eyk
Apolipoproteins Quantified Using Blood Volumetric Absorptive Microsampling and High-Throughput Mass Spectrometry for Risk Assessment in Ischemic Heart Disease. Circulation 149 (12) (2024)
Oleg A Karpov, Aleksandr Stotland, Koen Raedschelders, Blandine Chazarin, Lizhuo Ai, Christopher I Murray, Jennifer E Van Eyk
Proteomics of the heart. Physiological reviews 104 (3) (2024)
Yuming Jiang, Daniel DeBord, Heidi Vitrac, Jordan Stewart, Ali Haghani, Jennifer E Van Eyk, Justyna Fert-Bober, Jesse G Meyer
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics? Journal of proteome research (2024)
Paul Marano, Kelly Mouapi, Andy Kim, Mitra Mastali, Irene van den Broek, Danica Manalo, Qin Fu, Susan C Cheng, Chrisandra L Shufelt, Brennan Spiegel, C Noel Bairey Merz, Jennifer E Van Eyk
Apolipoproteins Quantified Using Blood Volumetric Absorptive Microsampling and High-Throughput Mass Spectrometry for Risk Assessment in Ischemic Heart Disease. Circulation 149 (12) (2024)
Arsen Osipov, Ognjen Nikolic, Arkadiusz Gertych, Sarah Parker, Andrew Hendifar, Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R Ferrone, Lei Zheng, Jason H Moore, Warren Tourtellotte, Jennifer E Van Eyk, Dan Theodorescu
The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients. Nature cancer 5 (2) (2024)
Yuming Jiang, Daniel DeBord, Heidi Vitrac, Jordan Stewart, Ali Haghani, Jennifer E Van Eyk, Justyna Fert-Bober, Jesse G Meyer
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics? Journal of proteome research (2024)
Arsen Osipov, Ognjen Nikolic, Arkadiusz Gertych, Sarah Parker, Andrew Hendifar, Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R Ferrone, Lei Zheng, Jason H Moore, Warren Tourtellotte, Jennifer E Van Eyk, Dan Theodorescu
The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients. Nature cancer (2024)
Paul Marano, Kelly Mouapi, Andy Kim, Mitra Mastali, Irene van den Broek, Danica Manalo, Qin Fu, Susan C Cheng, Chrisandra L Shufelt, Brennan Spiegel, C Noel Bairey Merz, Jennifer E Van Eyk
Apolipoproteins Quantified Using Blood Volumetric Absorptive Microsampling and High-Throughput Mass Spectrometry for Risk Assessment in Ischemic Heart Disease. Circulation 149 (12) (2024)
Stanislav Tsitkov, Kelsey Valentine, Velina Kozareva, Aneesh Donde, Aaron Frank, Susan Lei, null null, Jennifer E Van Eyk, Steve Finkbeiner, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, Ernest Fraenkel
Disease related changes in ATAC-seq of iPSC-derived motor neuron lines from ALS patients and controls. Nature communications 15 (1) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research 23 (2) (2024)
Edgar E Nollet, Maike Schuldt, Vasco Sequeira, Aleksandra Binek, Thang V Pham, Stephan A C Schoonvelde, Mark Jansen, Bauke V Schomakers, Michel van Weeghel, Frederic M Vaz, Riekelt H L Houtkooper, Jennifer E Van Eyk, Connie R Jiménez, Michelle Michels, Kenneth C Bedi, Kenneth B Margulies, Cristobal G Dos Remedios, Diederik W D Kuster, Jolanda van der Velden
Integrating Clinical Phenotype With Multiomics Analyses of Human Cardiac Tissue Unveils Divergent Metabolic Remodeling in Genotype-Positive and Genotype-Negative Patients With Hypertrophic Cardiomyopathy. Circulation. Genomic and precision medicine 17 (3) (2024)
Stanislav Tsitkov, Kelsey Valentine, Velina Kozareva, Aneesh Donde, Aaron Frank, Susan Lei, null null, Jennifer E Van Eyk, Steve Finkbeiner, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, Ernest Fraenkel
Disease related changes in ATAC-seq of iPSC-derived motor neuron lines from ALS patients and controls. Nature communications 15 (1) (2024)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Cecilia Lindskog, Charles Pineau, Nicolle H Packer, Ileana M Cristea, Susan T Weintraub, Sandra E Orchard, Michael H A Roehrl, Edouard Collins Nice, Tiannan Guo, Jennifer E Van Eyk, Siqi Liu, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
The 2023 Report on the Proteome from the HUPO Human Proteome Project. Journal of proteome research (2024)
Paul Marano, Kelly Mouapi, Andy Kim, Mitra Mastali, Irene van den Broek, Danica Manalo, Qin Fu, Susan C Cheng, Chrisandra L Shufelt, Brennan Spiegel, C Noel Bairey Merz, Jennifer E Van Eyk
Apolipoproteins Quantified Using Blood Volumetric Absorptive Microsampling and High-Throughput Mass Spectrometry for Risk Assessment in Ischemic Heart Disease. Circulation 149 (12) (2024)
Arsen Osipov, Ognjen Nikolic, Arkadiusz Gertych, Sarah Parker, Andrew Hendifar, Pranav Singh, Darya Filippova, Grant Dagliyan, Cristina R Ferrone, Lei Zheng, Jason H Moore, Warren Tourtellotte, Jennifer E Van Eyk, Dan Theodorescu
The Molecular Twin artificial-intelligence platform integrates multi-omic data to predict outcomes for pancreatic adenocarcinoma patients. Nature cancer (2024)
Amanda Momenzadeh, Yuming Jiang, Simion Kreimer, Laura E Teigen, Carlos S Zepeda, Ali Haghani, Mitra Mastali, Yang Song, Alexandre Hutton, Sarah J Parker, Jennifer E Van Eyk, Christopher W Sundberg, Jesse G Meyer
Complete Workflow for High Throughput Human Single Skeletal Muscle Fiber Proteomics. bioRxiv : the preprint server for biology (2023)
Stephen A Whelan, Nathan Hendricks, Zachary L Dwight, Qin Fu, Annie Moradian, Jennifer E Van Eyk, Susan M Mockus
Assessment of a 60-Biomarker Health Surveillance Panel (HSP) on Whole Blood from Remote Sampling Devices by Targeted LC/MRM-MS and Discovery DIA-MS Analysis. Analytical chemistry (2023)
Amanda Momenzadeh, Yuming Jiang, Simion Kreimer, Laura E Teigen, Carlos S Zepeda, Ali Haghani, Mitra Mastali, Yang Song, Alexandre Hutton, Sarah J Parker, Jennifer E Van Eyk, Christopher W Sundberg, Jesse G Meyer
Complete Workflow for High Throughput Human Single Skeletal Muscle Fiber Proteomics. bioRxiv : the preprint server for biology (2023)
Niveda Sundararaman, Archana Bhat, Vidya Venkatraman, Aleksandra Binek, Zachary Dwight, Nethika R Ariyasinghe, Sean Escopete, Sandy Y Joung, Susan Cheng, Sarah J Parker, Justyna Fert-Bober, Jennifer E Van Eyk
BIRCH: An Automated Workflow for Evaluation, Correction, and Visualization of Batch Effect in Bottom-Up Mass Spectrometry-Based Proteomics Data. Journal of proteome research 22 (2) (2023)
Andrea D Matlock, Vineet Vaibhav, Ronald Holewinski, Vidya Venkatraman, Victoria Dardov, Danica-Mae Manalo, Brandon Shelley, Loren Ornelas, Maria Banuelos, Berhan Mandefro, Renan Escalante-Chong, Jonathan Li, Steven Finkbeiner, Ernest Fraenkel, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, null null, Jennifer E Van Eyk
NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency. Scientific data 10 (1) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Andrea D Matlock, Vineet Vaibhav, Ronald Holewinski, Vidya Venkatraman, Victoria Dardov, Danica-Mae Manalo, Brandon Shelley, Loren Ornelas, Maria Banuelos, Berhan Mandefro, Renan Escalante-Chong, Jonathan Li, Steven Finkbeiner, Ernest Fraenkel, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, null null, Jennifer E Van Eyk
NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency. Scientific data 10 (1) (2023)
Andrea D Matlock, Vineet Vaibhav, Ronald Holewinski, Vidya Venkatraman, Victoria Dardov, Danica-Mae Manalo, Brandon Shelley, Loren Ornelas, Maria Banuelos, Berhan Mandefro, Renan Escalante-Chong, Jonathan Li, Steven Finkbeiner, Ernest Fraenkel, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, null null, Jennifer E Van Eyk
NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency. Scientific data 10 (1) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Yuri Kim, Mitra Mastali, Jennifer E Van Eyk, E John Orav, Christoffer Rasmus Vissing, Sharlene M Day, Anna Axelsson Raja, Mark W Russell, Kenneth Zahka, Harry M Lever, Alexandre da Costa Pereira, Anne M Murphy, Charles E Canter, Richard G Bach, Matthew T Wheeler, Joseph W Rossano, Anjali Tiku Owens, Henning Bundgaard, Lee N Benson, Luisa Mestroni, Matthew R G Taylor, Amit R Patel, Ivan Wilmot, Philip Thrush, Jonathan H Soslow, Jason R Becker, Christine E Seidman, Carolyn Y Ho, null null
Transforming Growth Factor-β Analysis of the VANISH Trial Cohort. Circulation. Heart failure (2023)
Hayato Muranaka, Andrew Hendifar, Arsen Osipov, Natalie Moshayedi, Veronica Placencio-Hickok, Nicholas Tatonetti, Aleksandr Stotland, Sarah Parker, Jennifer E Van Eyk, Stephen Jacob Pandol, Neil A Bhowmick, Jun Gong
Plasma Metabolomics Predicts Chemotherapy Response in Advanced Pancreatic Cancer. Cancers 15 (11) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Niveda Sundararaman, Archana Bhat, Vidya Venkatraman, Aleksandra Binek, Zachary Dwight, Nethika R Ariyasinghe, Sean Escopete, Sandy Y Joung, Susan Cheng, Sarah J Parker, Justyna Fert-Bober, Jennifer E Van Eyk
BIRCH: An Automated Workflow for Evaluation, Correction, and Visualization of Batch Effect in Bottom-Up Mass Spectrometry-Based Proteomics Data. Journal of proteome research 22 (2) (2023)
Niveda Sundararaman, Archana Bhat, Vidya Venkatraman, Aleksandra Binek, Zachary Dwight, Nethika R Ariyasinghe, Sean Escopete, Sandy Y Joung, Susan Cheng, Sarah J Parker, Justyna Fert-Bober, Jennifer E Van Eyk
BIRCH: An Automated Workflow for Evaluation, Correction, and Visualization of Batch Effect in Bottom-Up Mass Spectrometry-Based Proteomics Data. Journal of proteome research 22 (2) (2023)
Andrea D Matlock, Vineet Vaibhav, Ronald Holewinski, Vidya Venkatraman, Victoria Dardov, Danica-Mae Manalo, Brandon Shelley, Loren Ornelas, Maria Banuelos, Berhan Mandefro, Renan Escalante-Chong, Jonathan Li, Steven Finkbeiner, Ernest Fraenkel, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, null null, Jennifer E Van Eyk
NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency. Scientific data 10 (1) (2023)
Niveda Sundararaman, Archana Bhat, Vidya Venkatraman, Aleksandra Binek, Zachary Dwight, Nethika R Ariyasinghe, Sean Escopete, Sandy Y Joung, Susan Cheng, Sarah J Parker, Justyna Fert-Bober, Jennifer E Van Eyk
BIRCH: An Automated Workflow for Evaluation, Correction, and Visualization of Batch Effect in Bottom-Up Mass Spectrometry-Based Proteomics Data. Journal of proteome research (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods (2023)
Andrea D Matlock, Vineet Vaibhav, Ronald Holewinski, Vidya Venkatraman, Victoria Dardov, Danica-Mae Manalo, Brandon Shelley, Loren Ornelas, Maria Banuelos, Berhan Mandefro, Renan Escalante-Chong, Jonathan Li, Steven Finkbeiner, Ernest Fraenkel, Jeffrey D Rothstein, Leslie M Thompson, Dhruv Sareen, Clive N Svendsen, null null, Jennifer E Van Eyk
NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency. Scientific data 10 (1) (2023)
Simion Kreimer, Aleksandra Binek, Blandine Chazarin, Jae Hyung Cho, Ali Haghani, Alexandre Hutton, Eduardo Marbán, Mitra Mastali, Jesse G Meyer, Thássio Ricardo R Mesquita, Yang Song, Jennifer E Van Eyk, Sarah J Parker
High-Throughput Single-Cell Proteomic Analysis of Organ-Derived Heterogeneous Cell Populations by Nanoflow Dual-Trap Single-Column Liquid Chromatography. Analytical chemistry (2023)
Amanda Momenzadeh, Yuming Jiang, Simion Kreimer, Laura E Teigen, Carlos S Zepeda, Ali Haghani, Mitra Mastali, Yang Song, Alexandre Hutton, Sarah J Parker, Jennifer E Van Eyk, Christopher W Sundberg, Jesse G Meyer
A Complete Workflow for High Throughput Human Single Skeletal Muscle Fiber Proteomics. Journal of the American Society for Mass Spectrometry (2023)
Lizhuo Ai, Aleksandra Binek, Simion Kreimer, Matthew Ayres, Aleksandr Stotland, Jennifer E Van Eyk
High-Field Asymmetric Waveform Ion Mobility Spectrometry: Practical Alternative for Cardiac Proteome Sample Processing. Journal of proteome research (2023)
Laurent Gatto, Ruedi Aebersold, Juergen Cox, Vadim Demichev, Jason Derks, Edward Emmott, Alexander M Franks, Alexander R Ivanov, Ryan T Kelly, Luke Khoury, Andrew Leduc, Michael J MacCoss, Peter Nemes, David H Perlman, Aleksandra A Petelski, Christopher M Rose, Erwin M Schoof, Jennifer E Van Eyk, Christophe Vanderaa, John Yates Iii, Nikolai Slavov
Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments. Nature methods 20 (3) (2023)
Emily S Lau, Aleksandra Binek, Sarah J Parker, Svati H Shah, Markella V Zanni, Jennifer E Van Eyk, Jennifer E Ho
Sexual Dimorphism in Cardiovascular Biomarkers: Clinical and Research Implications. Circulation research 130 (4) (2022)
Lucía Barbier-Torres, Ben Murray, Jin Won Yang, Jiaohong Wang, Michitaka Matsuda, Aaron Robinson, Aleksandra Binek, Wei Fan, David Fernández-Ramos, Fernando Lopitz-Otsoa, Maria Luque-Urbano, Oscar Millet, Nirmala Mavila, Hui Peng, Komal Ramani, Roberta A Gottlieb, Zhaoli Sun, Suthat Liangpunsakul, Jeffrey H Albrecht, Jennifer E Van Eyk, Jose M Mato, Shelly C Lu
Depletion of mitochondrial methionine adenosyltransferase α1 triggers mitochondrial dysfunction in alcohol-associated liver disease. Nature communications 13 (1) (2022)
Simion Kreimer, Ali Haghani, Aleksandra Binek, Alisse Hauspurg, Saeed Seyedmohammad, Alejandro Rivas, Amanda Momenzadeh, Jesse G Meyer, Koen Raedschelders, Jennifer E Van Eyk
Parallelization with Dual-Trap Single-Column Configuration Maximizes Throughput of Proteomic Analysis. Analytical chemistry 94 (36) (2022)
Emily G Baxi, Terri Thompson, Jonathan Li, Julia A Kaye, Ryan G Lim, Jie Wu, Divya Ramamoorthy, Leandro Lima, Vineet Vaibhav, Andrea Matlock, Aaron Frank, Alyssa N Coyne, Barry Landin, Loren Ornelas, Elizabeth Mosmiller, Sara Thrower, S Michelle Farr, Lindsey Panther, Emilda Gomez, Erick Galvez, Daniel Perez, Imara Meepe, Susan Lei, Berhan Mandefro, Hannah Trost, Louis Pinedo, Maria G Banuelos, Chunyan Liu, Ruby Moran, Veronica Garcia, Michael Workman, Ritchie Ho, Stacia Wyman, Jennifer Roggenbuck, Matthew B Harms, Jennifer Stocksdale, Ricardo Miramontes, Keona Wang, Vidya Venkatraman, Ronald Holewenski, Niveda Sundararaman, Rakhi Pandey, Danica-Mae Manalo, Aneesh Donde, Nhan Huynh, Miriam Adam, Brook T Wassie, Edward Vertudes, Naufa Amirani, Krishna Raja, Reuben Thomas, Lindsey Hayes, Alex Lenail, Aianna Cerezo, Sarah Luppino, Alanna Farrar, Lindsay Pothier, Carolyn Prina, Todd Morgan, Arish Jamil, Sarah Heintzman, Jennifer Jockel-Balsarotti, Elizabeth Karanja, Jesse Markway, Molly McCallum, Ben Joslin, Deniz Alibazoglu, Stephen J Kolb, Senda Ajroud-Driss, Robert H Baloh, Daragh Heitzman, Tim Miller, Jonathan D Glass, Natasha Leanna Patel-Murray, Hong Yu, Ervin Sinani, Prasha Vigneswaran, Alexander V Sherman, Omar Ahmad, Promit Roy, Jay C Beavers, Steven Zeiler, John W Krakauer, Carla Agurto, Guillermo A Cecchi, Mary Bellard, Yogindra Raghav, Karen Sachs, Tobias Ehrenberger, Elizabeth Bruce, Merit E Cudkowicz, Nicholas J Maragakis, Raquel Norel, Jennifer E Van Eyk, Steven Finkbeiner, James Berry, Dhruv Sareen, Leslie M Thompson, Ernest Fraenkel, Clive N Svendsen, Jeffrey D Rothstein
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines. Nature neuroscience 25 (2) (2022)
Shathiyah Kulandavelu, Raul A Dulce, Christopher I Murray, Michael A Bellio, Julia Fritsch, Rosemeire M Kanashiro-Takeuchi, Himanshu Arora, Ellena Paulino, Daniel Soetkamp, Wayne Balkan, Jennifer E Van Eyk, Joshua M Hare
S-Nitrosoglutathione Reductase Deficiency Causes Aberrant Placental S-Nitrosylation and Preeclampsia. Journal of the American Heart Association 11 (5) (2022)
Allen S Ho, Aaron Robinson, Wonwoo Shon, Anna Laury, Koen Raedschelders, Vidya Venkatraman, Ronald Holewinski, Yi Zhang, Stephen L Shiao, Michelle M Chen, Jon Mallen-St Clair, De-Chen Lin, Zachary S Zumsteg, Jennifer E Van Eyk
Comparative Proteomic Analysis of HPV(+) Oropharyngeal Squamous Cell Carcinoma Recurrence. Journal of proteome research (2021)
Daniel Soetkamp, Romain Gallet, Sarah J Parker, Ronald Holewinski, Vidya Venkatraman, Kiel Peck, Joshua I Goldhaber, Eduardo Marbán, Jennifer E Van Eyk
Myofilament Phosphorylation in Stem Cell Treated Diastolic Heart Failure. Circulation research 129 (12) (2021)
Joseph E Ebinger, Justyna Fert-Bober, Ignat Printsev, Min Wu, Nancy Sun, John C Prostko, Edwin C Frias, James L Stewart, Jennifer E Van Eyk, Jonathan G Braun, Susan C Cheng, Kimia Sobhani
Antibody responses to the BNT162b2 mRNA vaccine in individuals previously infected with SARS-CoV-2. Nature medicine 27 (6) (2021)
Angela McArdle, Kirstin E Washington, Blandine Chazarin Orgel, Aleksandra Binek, Danica-Mae Manalo, Alejandro Rivas, Matthew Ayres, Rakhi Pandey, Connor Phebus, Koen Raedschelders, Justyna Fert-Bober, Jennifer E Van Eyk
Discovery Proteomics for COVID-19: Where We Are Now. Journal of proteome research 20 (10) (2021)
Lívia Rosa-Fernandes, Raquel Hora Barbosa, Maria Luiza B Dos Santos, Claudia B Angeli, Thiago P Silva, Rossana C N Melo, Gilberto Santos de Oliveira, Bernardo Lemos, Jennifer E Van Eyk, Martin R Larsen, Claudete Araújo Cardoso, Giuseppe Palmisano
Cellular Imprinting Proteomics Assay: A Novel Method for Detection of Neural and Ocular Disorders Applied to Congenital Zika Virus Syndrome. Journal of proteome research 19 (11) (2020)
Rui Vitorino, Sofia Guedes, Francisco Veiga andCarla Vitorino, Rita Ferreira, Francisco Amado, Jennifer E Van Eyk
Elucidating Citrullination by Mass Spectrometry and Its Role in Disease Pathogenesis. Journal of proteome research 20 (1) (2020)
Rebecca A Porritt, Lisa Paschold, Magali Noval Rivas, Mary Hongying Cheng, Lael M Yonker, Harsha Chandnani, Merrick Lopez, Donjete Simnica, Christoph Schultheiß, Chintda Santiskulvong, Jennifer E Van Eyk, Alessio Fasano, Ivet Bahar, Mascha Binder, Moshe Arditi
Identification of a unique TCR repertoire, consistent with a superantigen selection process in Children with Multi-system Inflammatory Syndrome. bioRxiv : the preprint server for biology (2020)
Subash Adhikari, Edouard C Nice, Eric W Deutsch, Lydie Lane, Gilbert S Omenn, Stephen R Pennington, Young-Ki Paik, Christopher M Overall, Fernando J Corrales, Ileana M Cristea, Jennifer E Van Eyk, Mathias Uhlen, Cecilia Lindskog, Daniel W Chan, Amos Bairoch, James C Waddington, Joshua L Justice, Joshua LaBaer, Henry Rodriguez, Fuchu He, Markus Kostrzewa, Peipei Ping, Rebekah L Gundry, Peter Stewart, Sanjeeva Srivastava, Sudhir Srivastava, Fabio C S Nogueira, Gilberto B Domont, Yves Vandenbrouck, Maggie P Y Lam, Sara Wennersten, Juan Antonio Vizcaino, Marc R Wilkins, Jochen M Schwenk, Emma Lundberg, Nuno Bandeira, Gyorgy Marko-Varga, Susan T Weintraub, Charles Pineau, Ulrike Kusebauch, Robert L Moritz, Seong Beom Ahn, Magnus Palmblad, Michael Paul Snyder, Ruedi Aebersold, Mark S Baker
A high-stringency blueprint of the human proteome. Nature communications 11 (1) (2020)
Sarah J Parker, Lulu Chen, Weston Spivia, Georgia Saylor, Chunhong Mao, Vidya Venkatraman, Ronald J Holewinski, Mitra Mastali, Rakhi Pandey, Grace Athas, Guoqiang Yu, Qin Fu, Dana Troxlair, Richard Vander Heide, David Herrington, Jennifer E Van Eyk, Yue Wang
Identification of Putative Early Atherosclerosis Biomarkers by Unsupervised Deconvolution of Heterogeneous Vascular Proteomes. Journal of proteome research 19 (7) (2020)
Jonah Doustar, Altan Rentsendorj, Tania Torbati, Giovanna C Regis, Dieu-Trang Fuchs, Julia Sheyn, Nazanin Mirzaei, Stuart L Graham, Prediman K Shah, Mitra Mastali, Jennifer E Van Eyk, Keith L Black, Vivek K Gupta, Mehdi Mirzaei, Yosef Koronyo, Maya Koronyo-Hamaoui
Parallels between retinal and brain pathology and response to immunotherapy in old, late-stage Alzheimer's disease mouse models. Aging cell (2020)
Aaron Elias Robinson, Aleksandra Binek, Vidya Venkatraman, Brian C Searle, Ronald J Holewinski, George Rosenberger, Sarah J Parker, Nathan Basisty, Xueshu Xie, Peder J Lund, Gautam Saxena, José M Mato, Benjamin A Garcia, Birgit Schilling, Shelly C Lu, Jennifer E Van Eyk
Lysine and Arginine Protein Post-translational Modifications by Enhanced DIA Libraries: Quantification in Murine Liver Disease. Journal of proteome research 19 (10) (2020)
Niveda Sundararaman, James Go, Aaron Elias Robinson, José M Mato, Shelly C Lu, Jennifer E Van Eyk, Vidya Venkatraman
PINE: An Automation Tool to Extract and Visualize Protein-Centric Functional Networks. Journal of the American Society for Mass Spectrometry 31 (7) (2020)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Ileana M Cristea, Fernando José Corrales, Cecilia Lindskog, Young-Ki Paik, Jennifer E Van Eyk, Siqi Liu, Stephen R Pennington, Michael P Snyder, Mark S Baker, Nuno Bandeira, Ruedi Aebersold, Robert L Moritz, Eric W Deutsch
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. Journal of proteome research 19 (12) (2020)
Mark J Ranek, Christian Oeing, Rebekah Sanchez-Hodge, Kristen M Kokkonen-Simon, Danielle Dillard, M Imran Aslam, Peter P Rainer, Sumita Mishra, Brittany Dunkerly-Eyring, Ronald J Holewinski, Cornelia Virus, Huaqun Zhang, Matthew M Mannion, Vineet Agrawal, Virginia Hahn, Dong I Lee, Masayuki Sasaki, Jennifer E Van Eyk, Monte S Willis, Richard C Page, Jonathan C Schisler, David A Kass
CHIP phosphorylation by protein kinase G enhances protein quality control and attenuates cardiac ischemic injury. Nature communications 11 (1) (2020)
Irene van den Broek, Mitra Mastali, Kelly Mouapi, Cory Bystrom, C Noel Bairey Merz, Jennifer E Van Eyk
Quality Control and Outlier Detection of Targeted Mass Spectrometry Data from Multiplex Protein Panels. Journal of proteome research 19 (6) (2020)
Shenyan Zhang, Koen Raedschelders, Vidya Venkatraman, Lilith Huang, Ronald Holewinski, Qin Fu, Jennifer E Van Eyk
A Dual Workflow to Improve the Proteomic Coverage in Plasma Using Data-Independent Acquisition-MS. Journal of proteome research 19 (7) (2020)
Cristina Ruiz-Romero, Maggie P Y Lam, Peter Nilsson, Patrik Önnerfjord, Paul J Utz, Jennifer E Van Eyk, Vidya Venkatraman, Justyna Fert-Bober, Fiona E Watt, Francisco Javier Blanco
Mining the Proteome Associated with Rheumatic and Autoimmune Diseases. Journal of proteome research 18 (12) (2019)
Eric W Deutsch, Lydie Lane, Christopher M Overall, Nuno Bandeira, Mark S Baker, Charles Pineau, Robert L Moritz, Fernando José Corrales, Sandra E Orchard, Jennifer E Van Eyk, Young-Ki Paik, Susan T Weintraub, Yves Vandenbrouck, Gilbert S Omenn
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. Journal of proteome research 18 (12) (2019)
Gilbert S Omenn, Lydie Lane, Christopher M Overall, Fernando J Corrales, Jochen M Schwenk, Young-Ki Paik, Jennifer E Van Eyk, Siqi Liu, Stephen Pennington, Michael P Snyder, Mark S Baker, Eric W Deutsch
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. Journal of proteome research 18 (12) (2019)
Justyna Fert-Bober, Vidya Venkatraman, Christie L Hunter, Ruining Liu, Erin L Crowgey, Rakhi Pandey, Ronald J Holewinski, Aleksandr Stotland, Benjamin P Berman, Jennifer E Van Eyk
Mapping Citrullinated Sites in Multiple Organs of Mice Using Hypercitrullinated Library. Journal of proteome research 18 (5) (2019)
Jennifer E Van Eyk, Michael P Snyder
Precision Medicine: Role of Proteomics in Changing Clinical Management and Care. Journal of proteome research 18 (1) (2018)

Jennifer E Van Eyk.css-eqlu8i{font-size:small;padding-left:4px;} (Jennifer Van Eyk, Jenny E Van Eyk)

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Jennifer E Van Eyk (Jennifer Van Eyk, Jenny E Van Eyk)