Ahmet Zehir (A Zehir)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 53

Top Venues

Clinical cancer research : an official journal of the American Association for Cancer Research

Nature communications

JCO precision oncology

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Ryan N Ptashkin, Mark D Ewalt, Gowtham Jayakumaran, Iwona Kiecka, Anita S Bowman, JinJuan Yao, Jacklyn Casanova, Yun-Te David Lin, Kseniya Petrova-Drus, Abhinita S Mohanty, Ruben Bacares, Jamal K Benhamida, Satshil Rana, Anna Razumova, Chad M Vanderbilt, Anoop Balakrishnan Rema, Ivelise Rijo, Julie Son-Garcia, Ino De Bruijn, Menglei Zhu, Sean Lachhander, Wei Wang, Mohammad S Haque, Venkatraman E Seshan, Jiajing Wang, Ying Liu, Khedoudja Nafa, Laetitia Borsu, Yanming Zhang, Umut Aypar, Sarah P Suehnholz, Debyani Chakravarty, Jae H Park, Omar Abdel-Wahab, Anthony R Mato, Wenbin Xiao, Mikhail Roshal, Mariko Yabe, Connie Lee Batlevi, Sergio Giralt, Gilles Andre Salles, Raajit K Rampal, Martin Tallman, Eytan M Stein, Anas Younes, Ross L Levine, Miguel-Ángel Perales, Marcel R M van den Brink, Ahmet Dogan, Marc Ladanyi, Michael F Berger, Angela Rose Brannon, Ryma Benayed, Ahmet Zehir, Maria E Arcila
Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing. Nature communications 14 (1) (2023)
Amanda E Marinoff, Liam F Spurr, Christina Fong, Yvonne Y Li, Suzanne J Forrest, Abigail Ward, Duong Doan, Laura B Corson, Audrey Mauguen, Navin R Pinto, Luke D Maese, Susan I Colace, Margaret E Macy, AeRang Kim, Amit J Sabnis, Mark A Applebaum, Theodore W Laetsch, Julia L Glade Bender, Daniel A Weiser, Megan Anderson, Brian D Crompton, Paul A Meyers, Ahmet Zehir, Laura Macconaill, Neal Lindeman, Jonathan Andrew Nowak, Marc Ladanyi, Alanna J Church, Andrew D Cherniak, Neerav N Shukla, Katherine A Janeway
Clinical Targeted Next-Generation Panel Sequencing Reveals MYC Amplification Is a Poor Prognostic Factor in Osteosarcoma. JCO precision oncology 7 (2023)
Sarah P Suehnholz, Moriah H Nissan, Hongxin Zhang, Ritika Kundra, Subhiksha Nandakumar, Calvin Lu, Stephanie Carrero, Amanda Dhaneshwar, Nicole C Fernandez, Benjamin W Xu, Maria E Arcila, Ahmet Zehir, Aijazuddin Syed, Angela Rose Brannon, Julia E Rudolph, Eder Paraiso, Paul J Sabbatini, Ross L Levine, Ahmet Dogan, Jianjiong Gao, Marc Ladanyi, Alexander E Drilon, Michael F Berger, David B Solit, Nikolaus Schultz, Debyani Chakravarty
Quantifying the Expanding Landscape of Clinical Actionability for Patients with Cancer. Cancer discovery (2023)
Sebastià Franch-Expósito, Miika Mehine, Ryan N Ptashkin, Kelly L Bolton, Chaitanya Bandlamudi, Preethi Srinivasan, Linda Zhang, Margaret A Goodell, Erika Gedvilaite, Kamal Menghrajani, Pablo Sánchez Vela, Diana L Mandelker, Elizabeth Comen, Larry Norton, Ryma Benayed, Teng Gao, Elli Papaemmanuil, Barry S Taylor, Ross Levine, Kenneth Offit, Zsofia K Stadler, Michael F Berger, Ahmet Zehir
Associations Between Cancer Predisposition Mutations and Clonal Hematopoiesis in Patients With Solid Tumors. JCO precision oncology 7 (2023)
Barbara Spitzer, Kayleigh D Rutherford, Gunes Gundem, Erin M McGovern, Nathan E Millard, Juan E Arango Ossa, Irene Y Cheung, Teng Gao, Max F Levine, Yanming Zhang, Juan Santiago Medina-Martinez, Yi Feng, Ryan N Ptashkin, Kelly L Bolton, Noushin Farnoud, Yangyu Zhou, Minal A Patel, Georgios Asimomitis, Cassidy C Cobbs, Neeman Mohibullah, Kety H Huberman, Maria E Arcilla, Brian H Kushner, Shakeel Modak, Andrew L Kung, Ahmet Zehir, Ross L Levine, Scott A Armstrong, Nai Kong V Cheung, Elli Papaemmanuil
Bone Marrow Surveillance of Pediatric Cancer Survivors Identifies Clones that Predict Therapy-Related Leukemia. Clinical cancer research : an official journal of the American Association for Cancer Research 28 (8) (2022)
Benjamin A Nacev, Francisco Sanchez-Vega, Shaleigh A Smith, Cristina R Antonescu, Evan Rosenbaum, Hongyu Shi, Cerise Tang, Nicholas D Socci, Satshil Rana, Rodrigo Gularte-Mérida, Ahmet Zehir, Mrinal M Gounder, Timothy G Bowler, Anisha Luthra, Bhumika Jadeja, Azusa Okada, Jonathan A Strong, Jake Stoller, Jason E Chan, Ping Chi, Sandra P D' Angelo, Mark A Dickson, Ciara M Kelly, Mary Louise Keohan, Sujana Movva, Katherine Thornton, Paul A Meyers, Leonard H Wexler, Emily K Slotkin, Julia L Glade Bender, Neerav N Shukla, Martee L Hensley, John H Healey, Michael P La Quaglia, Kaled M Alektiar, Aimee M Crago, Sam S Yoon, Brian R Untch, Sarah Chiang, Narasimhan P Agaram, Meera R Hameed, Michael F Berger, David B Solit, Nikolaus Schultz, Marc Ladanyi, Samuel Singer, William D Tap
Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets. Nature communications 13 (1) (2022)
Justin Jee, Emily S Lebow, Randy Yeh, Jeeban P Das, Azadeh Namakydoust, Paul K Paik, Jamie E Chaft, Gowtham Jayakumaran, Angela Rose Brannon, Ryma Benayed, Ahmet Zehir, Mark Donoghue, Nikolaus Schultz, Debyani Chakravarty, Ritika Kundra, Ramyasree Madupuri, Yonina R Murciano-Goroff, Hai-Yan Tu, Chong-Rui Xu, Andrés Martinez, Clare Wilhelm, Jesse Galle, Bobby Daly, Helena Alexandra Yu, Michael D Offin, Matthew D Hellmann, Piro Lito, Kathryn C Arbour, Marjorie G Zauderer, Mark G Kris, Kenneth K Ng, Juliana Eng, Isabel Preeshagul, W Victoria Lai, John J Fiore, Afsheen Iqbal, Daniela Molena, Gaetano Rocco, Bernard J Park, Lee P Lim, Mark Li, Candace Tong-Li, Madhawa De Silva, David L Chan, Connie I Diakos, Malinda Itchins, Stephen John Clarke, Nick Pavlakis, Adrian Lee, Natasha Rekhtman, Jason Chang, William D Travis, Gregory J Riely, David B Solit, Mithat Gonen, Valerie W Rusch, Andreas Rimner, Daniel Gomez, Alexander E Drilon, Howard I Scher, Sohrab P Shah, Michael F Berger, Maria E Arcila, Marc Ladanyi, Ross L Levine, Ronglai Shen, Pedram Razavi, Jorge Sergio Reis-Filho, David R Jones, Charles M Rudin, James M Isbell, Bob T Li
Overall survival with circulating tumor DNA-guided therapy in advanced non-small-cell lung cancer. Nature medicine 28 (11) (2022)
Xiaoxiao Ma, Nadeem Riaz, Robert M Samstein, Mark Lee, Vladimir Makarov, Cristina Valero, Diego Chowell, Fengshen Kuo, Douglas Hoen, Conall W R Fitzgerald, Hui Jiang, Jonathan Alektiar, Tyler J Alban, Ivan Juric, Prerana Bangalore Parthasarathy, Yu Zhao, Erich Y Sabio, Richa Verma, Raghvendra M Srivastava, Lynda Vuong, Wei Yang, Xiao Zhang, Jingming Wang, Lawrence K Chu, Stephen L Wang, Daniel W Kelly, Isaac X Pei, Jiapeng Chen, Rona Yaeger, Dmitriy Zamarin, Ahmet Zehir, Mithat Gönen, Luc G T Morris, Timothy A Chan
Functional landscapes of POLE and POLD1 mutations in checkpoint blockade-dependent antitumor immunity. Nature genetics 54 (7) (2022)
Ritesh R Kotecha, Erika Gedvilaite, Ryan Ptashkin, Andrea Knezevic, Samuel Murray, Ian Johnson, Natalie Shapnik, Darren R Feldman, Maria Isabel Carlo, Neil J Shah, Marisa Dunigan, Kety Huberman, Ryma Benayed, Ahmet Zehir, Michael F Berger, Marc Ladanyi, Dana Wai Yi Tsui, Robert J Motzer, Chung-Han Lee, Martin H Voss
Matched Molecular Profiling of Cell-Free DNA and Tumor Tissue in Patients With Advanced Clear Cell Renal Cell Carcinoma. JCO precision oncology 6 (2022)
N Shukla, Max Fine Levine, Gunes Gundem, D Domenico, B Spitzer, N Bouvier, J E Arango-Ossa, D Glodzik, J S Medina-Martínez, Umeshkumar K Bhanot, J Gutiérrez-Abril, Y Zhou, E Fiala, E Stockfisch, S Li, M I Rodriguez-Sanchez, T O'Donohue, Cassidy Cobbs, Michael H A Roehrl, Jamal K Benhamida, F Iglesias Cardenas, M Ortiz, M Kinnaman, S Roberts, M Ladanyi, S Modak, S Farouk-Sait, E Slotkin, Matthias A Karajannis, F Dela Cruz, Julia L Glade Bender, Ahmet Zehir, A Viale, Michael F Walsh, Andrew L Kung, Elli Papaemmanuil
Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers. Nature communications 13 (1) (2022)
Rodrigo Gularte-Mérida, Shaleigh Smith, Anita S Bowman, Arnaud da Cruz Paula, Walid K Chatila, Craig M Bielski, Monika Vyas, Laetitia Borsu, Ahmet Zehir, Luciano G Martelotto, Jinru Shia, Rona Yaeger, Fang Fang, Rui Gardner, Ruibang Luo, Michael C Schatz, Ronglai Shen, Jorge S Reis-Filho, Francisco Sánchez-Vega, Jorge Sergio Reis-Filho, Jaclyn F Hechtman
Same-Cell Co-Occurrence of RAS Hotspot and BRAF V600E Mutations in Treatment-Naive Colorectal Cancer. JCO precision oncology 6 (2022)
Koichi Ogura, Arielle Elkrief, Anita S Bowman, Richard P Koche, Elisa de Stanchina, Ryma Benayed, Audrey Mauguen, Marissa S Mattar, Inna Khodos, Paul A Meyers, John H Healey, William D Tap, Meera R Hameed, Ahmet Zehir, Neerav N Shukla, Charles L Sawyers, Rohit Bose, Emily K Slotkin, Marc Ladanyi
Prospective Clinical Genomic Profiling of Ewing Sarcoma: ERF and FGFR1 Mutations as Recurrent Secondary Alterations of Potential Biologic and Therapeutic Relevance. JCO precision oncology 6 (2022)
Fresia Pareja, Ryan N Ptashkin, David N Brown, Fatemeh Derakhshan, Pier Selenica, Edaise M Da Silva, Andrea M Gazzo, Arnaud Da Cruz Paula, Kelsey E Breen, Ronglai Shen, Antonio Marra, Ahmet Zehir, Ryma Benayed, Michael F Berger, Ozge Ceyhan-Birsoy, Sowmya Jairam, Margaret Sheehan, Utsav Patel, Yelena M Kemel, Jacklyn Casanova-Murphy, Christopher J Schwartz, Mahsa Vahdatinia, Elizabeth Comen, Laetitia Borsu, Isaac X Pei, Nadeem Riaz, David H Abramson, Britta Weigelt, Michael F Walsh, Anna-Katerina Hadjantonakis, Marc Ladanyi, Kenneth Offit, Zsofia K Stadler, Mark E Robson, Jorge S Reis-Filho, Diana Mandelker
Cancer-Causative Mutations Occurring in Early Embryogenesis. Cancer discovery 12 (4) (2022)
Ahmet Zehir, Michael F Berger
A quick guide for clinical oncology. Nature cancer 2 (10) (2022)
Kanika S Arora, Thinh Ngoc Tran, Yelena M Kemel, Miika Mehine, Ying L Liu, Subhiksha Nandakumar, Shaleigh A Smith, Angela Rose Brannon, Irina Ostrovnaya, Konrad H Stopsack, Pedram Razavi, Anton Safonov, Hira A Rizvi, Matthew D Hellmann, Joseph Vijai, Thomas C Reynolds, James A Fagin, Jian Carrot-Zhang, Kenneth Offit, David B Solit, Marc Ladanyi, Nikolaus Schultz, Ahmet Zehir, Carol L Brown, Zsofia K Stadler, Debyani Chakravarty, Chaitanya Bandlamudi, Michael F Berger
Genetic Ancestry Correlates with Somatic Differences in a Real-World Clinical Cancer Sequencing Cohort. Cancer discovery 12 (11) (2022)
Semanti Mukherjee, Chaitanya Bandlamudi, Matthew D Hellmann, Yelena M Kemel, Esther Drill, Hira Rizvi, Kaitlyn Tkachuk, Aliya Khurram, Michael F Walsh, Marjorie G Zauderer, Diana Mandelker, Sabine Topka, Ahmet Zehir, Preethi Srinivasan, Myvizhi Esai Selvan, Maria Isabel Carlo, Karen A Cadoo, Alicia J Latham, Jada G Hamilton, Ying L Liu, Steven M Lipkin, Sami Belhadj, Gareth L Bond, Zeynep Hülya Gümüş, Robert J Klein, Marc Ladanyi, David B Solit, Mark E Robson, David R Jones, Mark G Kris, Joseph Vijai, Zsofia K Stadler, Christopher Ian Amos, Barry S Taylor, Michael F Berger, Charles M Rudin, Kenneth Offit
Germline Pathogenic Variants Impact Clinicopathology of Advanced Lung Cancer. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 31 (7) (2022)
Emily K Slotkin, Anita S Bowman, Max F Levine, Filemon Dela Cruz, Diego F Coutinho, Glorymar I Sanchez, Nestor Rosales, Shakeel Modak, William D Tap, Mrinal M Gounder, Katherine A Thornton, Nancy Bouvier, Daoqi You, Gunes Gundem, Justin T Gerstle, Todd E Heaton, Michael P LaQuaglia, Leonard H Wexler, Paul A Meyers, Andrew L Kung, Elli Papaemmanuil, Ahmet Zehir, Marc Ladanyi, Neerav Shukla
Comprehensive Molecular Profiling of Desmoplastic Small Round Cell Tumor. Molecular cancer research : MCR 19 (7) (2021)
Angela Rose Brannon, Gowtham Jayakumaran, Monica Diosdado, Juber Patel, Anna Razumova, Yu Hu, Fanli Meng, Mohammad Haque, Justyna Sadowska, Brian J Murphy, Tessara Baldi, Ian Johnson, Ryan Ptashkin, Maysun M Hasan, Preethi Srinivasan, Anoop Balakrishnan Rema, Ivelise Rijo, Aaron Agarunov, Helen Won, Dilmi Perera, David N Brown, Aliaksandra Samoila, Xiaohong Jing, Erika Gedvilaite, Julie L Yang, Dennis P Stephens, Jenna-Marie Dix, Nicole DeGroat, Khedoudja Nafa, Aijazuddin Syed, Alan Li, Emily S Lebow, Anita S Bowman, Donna C Ferguson, Ying Liu, Douglas A Mata, Rohit Sharma, Soo-Ryum Yang, Tejus Bale, Jamal K Benhamida, Jason C Chang, Snjezana Dogan, Meera R Hameed, Jaclyn F Hechtman, Christine Moung, Dara S Ross, Efsevia Vakiani, Chad M Vanderbilt, JinJuan Yao, Pedram Razavi, Lillian M Smyth, Sarat Chandarlapaty, Gopakumar V Iyer, Wassim Abida, James J Harding, Benjamin Krantz, Eileen M O'Reilly, Helena A Yu, Bob T Li, Charles M Rudin, Luis A Diaz, David B Solit, Maria E Arcila, Marc Ladanyi, Brian R Loomis, Dana Tsui, Michael F Berger, Ahmet Zehir, Ryma Benayed
Enhanced specificity of clinical high-sensitivity tumor mutation profiling in cell-free DNA via paired normal sequencing using MSK-ACCESS. Nature communications 12 (1) (2021)
Preethi Srinivasan, Chaitanya Bandlamudi, Philip Jonsson, Yelena M Kemel, Shweta S Chavan, Allison L Richards, Alexander V Penson, Craig M Bielski, Christopher Fong, Aijazuddin Syed, Gowtham Jayakumaran, Meera Prasad, Jason Hwee, Selcuk Onur Sumer, Ino de Bruijn, Xiang Li, JianJiong Gao, Nikolaus Schultz, Roy Cambria, Jesse Galle, Semanti Mukherjee, Joseph Vijai, Karen A Cadoo, Maria Isabel Carlo, Michael F Walsh, Diana L Mandelker, Ozge Ceyhan-Birsoy, Jinru Shia, Ahmet Zehir, Marc Ladanyi, David M Hyman, Liying Zhang, Kenneth Offit, Mark E Robson, David B Solit, Zsofia K Stadler, Michael F Berger, Barry S Taylor
The context-specific role of germline pathogenicity in tumorigenesis. Nature genetics 53 (11) (2021)
Zhenfang Du, Benjamin P Brown, Soyeon Kim, Donna Ferguson, Dean C Pavlick, Gowtham Jayakumaran, Ryma Benayed, Jean-Nicolas Gallant, Yun-Kai Zhang, Yingjun Yan, Monica Red-Brewer, Siraj M Ali, Alexa B Schrock, Ahmet Zehir, Marc Ladanyi, Adam W Smith, Jens Meiler, Christine M Lovly
Structure-function analysis of oncogenic EGFR Kinase Domain Duplication reveals insights into activation and a potential approach for therapeutic targeting. Nature communications 12 (1) (2021)
Ritika Kundra, Hongxin Zhang, Robert Sheridan, Sahussapont Joseph Sirintrapun, Avery Wang, Angelica Ochoa, Manda Wilson, Benjamin Gross, Yichao Sun, Ramyasree Madupuri, Baby A Satravada, Dalicia Reales, Efsevia Vakiani, Hikmat A Al-Ahmadie, Ahmet Dogan, Maria Arcila, Ahmet Zehir, Steven B Maron, Michael F Berger, Cristina Viaplana, Katherine Janeway, Matthew D Ducar, Lynette Sholl, Snjezana Dogan, Philippe L Bedard, Lea F Surrey, Iker Huerga Sanchez, Aijaz Syed, Anoop Balakrishnan Rema, Debyani Chakravarty, Sarah Suehnholz, Moriah H Nissan, Gopakumar V Iyer, Rajmohan Murali, Nancy Bouvier, Robert A Soslow, David M Hyman, Anas Younes, Andrew M Intlekofer, James J Harding, Richard D Carvajal, Paul J Sabbatini, Ghassan K Abou-Alfa, Luc G T Morris, Yelena Y Janjigian, Meighan M Gallagher, Tara A Soumerai, Ingo K Mellinghoff, Abraham Ari Hakimi, Matthew Fury, Jason T Huse, Aditya Bagrodia, Meera R Hameed, Stacy B Thomas, Stuart M Gardos, Ethan Cerami, Tali Mazor, Priti Kumari, Pichai Raman, Priyanka Shivdasani, Suzanne P MacFarland, Scott Newman, Angela Waanders, Jianjiong Gao, David B Solit, Nikolaus Schultz
OncoTree: A Cancer Classification System for Precision Oncology. JCO clinical cancer informatics 5 (2021)
Ying L Liu, Karen A Cadoo, Semanti Mukherjee, Aliya Khurram, Kaitlyn Tkachuk, Yelena M Kemel, Anna Maio, Sami Belhadj, Maria Isabel Carlo, Alicia J Latham, Michael F Walsh, Marianne E Dubard-Gault, Yuhan Wang, A Rose Brannon, Erin Salo-Mullen, Margaret Sheehan, Elise Fiala, Bryan Devolder, Sita Dandiker, Diana Mandelker, Ahmet Zehir, Marc Ladanyi, Michael F Berger, David B Solit, Chaitanya Bandlamudi, Vignesh Ravichandran, Dean F Bajorin, Zsofia K Stadler, Mark E Robson, Joseph Vijai, Venkatraman Seshan, Kenneth Offit
Multiple Primary Cancers in Patients Undergoing Tumor-Normal Sequencing Define Novel Associations. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology (2021)
Edaise M Da Silva, Daniel J Fix, Ana Paula Martins Sebastiao, Pier Selenica, Lorenzo Ferrando, Sarah H Kim, Anthe Stylianou, Arnaud Da Cruz Paula, Fresia Pareja, Evan S Smith, Ahmet Zehir, Jason A Konner, Karen Cadoo, Jorge Sergio Reis-Filho, Nadeem R Abu-Rustum, Jennifer J Mueller, Jorge S Reis-Filho, Kay J Park
Mesonephric and mesonephric-like carcinomas of the female genital tract: molecular characterization including cases with mixed histology and matched metastases. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 34 (8) (2021)
Cristina Valero, Mark Lee, Douglas Hoen, Jingming Wang, Zaineb Nadeem, Neal Patel, Michael A Postow, Alexander N Shoushtari, George Plitas, Vinod P Balachandran, J Joshua Smith, Aimee M Crago, Kara Long Roche, Daniel W Kelly, Robert M Samstein, Satshil Rana, Ian Ganly, Richard J Wong, Abraham Ari Hakimi, Michael F Berger, Ahmet Zehir, David B Solit, Marc Ladanyi, Nadeem Riaz, Timothy A Chan, Venkatraman E Seshan, Luc G T Morris
The association between tumor mutational burden and prognosis is dependent on treatment context. Nature genetics 53 (1) (2021)
Himalee S Sabnis, David S Shulman, Benjamin E Mizukawa, Nancy Bouvier, Ahmet Zehir, Jason R Fangusaro, Vanessa A Fabrizio, Chanta Whitlow, Marilyn Winchester, Laura Agresta, Brian Turpin, Daniel S Wechsler, Steven G DuBois, Julia L Glade Bender, Sharon M Castellino, Neerav N Shukla
Multicenter Analysis of Genomically Targeted Single Patient Use Requests for Pediatric Neoplasms. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 39 (34) (2021)
Diego Chowell, Seong-Keun Yoo, Cristina Valero, Alessandro Pastore, Chirag Krishna, Mark Lee, Douglas Hoen, Hongyu Shi, Daniel W Kelly, Neal Patel, Vladimir Makarov, Xiaoxiao Ma, Lynda Vuong, Erich Y Sabio, Kate Weiss, Fengshen Kuo, Tobias L Lenz, Robert M Samstein, Nadeem Riaz, Prasad S Adusumilli, Vinod P Balachandran, George Plitas, A Ari Hakimi, Omar Abdel-Wahab, Alexander N Shoushtari, Michael A Postow, Robert J Motzer, Marc Ladanyi, Ahmet Zehir, Michael F Berger, Mithat Gönen, Luc G T Morris, Nils Weinhold, Timothy A Chan
Improved prediction of immune checkpoint blockade efficacy across multiple cancer types. Nature biotechnology (2021)
Kelly L Bolton, Youngil Koh, Michael B Foote, Hogune Im, Justin Jee, Choong Hyun Sun, Anton Safonov, Ryan Ptashkin, Joon Ho Moon, Ji Yeon Lee, Jongtak Jung, Chang Kyung Kang, Kyoung-Ho Song, Pyeong Gyun Choe, Pyoeng Gyun Choe, Hong Bin Kim, Myoung-don Oh, Han Song, Sugyeong Kim, Minal Patel, Andriy Derkach, Erika Gedvilaite, Kaitlyn A Tkachuk, Brian J Wiley, Ireaneus C Chan, Lior Z Braunstein, Teng Gao, Elli Papaemmanuil, N Esther Babady, Melissa S Pessin, Mini Kamboj, Luis A Diaz, Marc Ladanyi, Michael J Rauh, Pradeep Natarajan, Mitchell J Machiela, Phillip Awadalla, Joseph Vijai, Kenneth Offit, Larry Norton, Michael F Berger, Ross L Levine, Eu-Suk Kim, Nam Joong Kim, Ahmet Zehir
Clonal hematopoiesis is associated with risk of severe Covid-19. Nature communications 12 (1) (2021)
Michael Herman Chui, Jason C Chang, Yanming Zhang, Ahmet Zehir, Alison M Schram, Jason A Konner, Alexander E Drilon, Arnaud Da Cruz Paula, Jorge S Reis-Filho, Rachel N Grisham
Spectrum of BRAF Mutations and Gene Rearrangements in Ovarian Serous Carcinoma. JCO precision oncology 5 (2021)
Zsofia K Stadler, Anna Maio, Debyani Chakravarty, Yelena M Kemel, Margaret Sheehan, Erin Salo-Mullen, Kaitlyn Tkachuk, Christopher J Fong, Bastien Nguyen, Amanda Erakky, Karen A Cadoo, Ying L Liu, Maria Isabel Carlo, Alicia J Latham, Hongxin Zhang, Ritika Kundra, Shaleigh Smith, Jesse Galle, Carol Aghajanian, Nadeem Abu-Rustum, Marjorie G Zauderer, Eileen M O'Reilly, Michael J Morris, Wassim Abida, Michael F Walsh, Alexander E Drilon, Gowtham Jayakumaran, Ahmet Zehir, Marc Ladanyi, Ozge Ceyhan-Birsoy, David B Solit, Nikolaus Schultz, Michael F Berger, Diana L Mandelker, Luis A Diaz, Kenneth Offit, Mark E Robson
Therapeutic Implications of Germline Testing in Patients With Advanced Cancers. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 39 (24) (2021)
Cristina Valero, Mark Lee, Douglas Hoen, Kate Weiss, Daniel W Kelly, Prasad S Adusumilli, Paul K Paik, George Plitas, Marc Ladanyi, Michael A Postow, Charlotte E Ariyan, Alexander N Shoushtari, Vinod P Balachandran, Abraham Ari Hakimi, Aimee M Crago, Kara C Long Roche, J Joshua Smith, Ian Ganly, Richard J Wong, Snehal G Patel, Jatin P Shah, Nancy Y Lee, Nadeem Riaz, Jingming Wang, Ahmet Zehir, Michael F Berger, Timothy A Chan, Venkatraman E Seshan, Luc G T Morris
Pretreatment neutrophil-to-lymphocyte ratio and mutational burden as biomarkers of tumor response to immune checkpoint inhibitors. Nature communications 12 (1) (2021)
Michael Herman Chui, Ciyu Yang, Nikita Mehta, Vikas Rai, Ahmet Zehir, Amir Momeni Boroujeni, Marc Ladanyi, Diana Mandelker
Somatic intronic TP53 c.375+5G mutations are a recurrent but under-recognized mode of TP53 inactivation. The journal of pathology. Clinical research (2021)
Teng Gao, Ryan Ptashkin, Kelly L Bolton, Maria Sirenko, Christopher Fong, Barbara Spitzer, Kamal Menghrajani, Juan E Arango Ossa, Yangyu Zhou, Elsa Bernard, Max Fine Levine, Juan S Medina Martinez, Yanming Zhang, Sebastià Franch-Expósito, Minal Patel, Lior Z Braunstein, Daniel Kelly, Mariko Yabe, Ryma Benayed, Nicole M Caltabellotta, John Philip, Ederlinda Paraiso, Simon Mantha, David B Solit, Luis A Diaz, Michael F Berger, Virginia Klimek, Ross L Levine, Ahmet Zehir, Sean M Devlin, Elli Papaemmanuil
Interplay between chromosomal alterations and gene mutations shapes the evolutionary trajectory of clonal hematopoiesis. Nature communications 12 (1) (2021)
Robin Guo, Michael D Offin, A Rose Brannon, Jason Chang, Andrew Chow, Lukas Delasos, Jeffrey Girshman, Olivia Wilkins, Caroline G McCarthy, Alex Makhnin, Christina Falcon, Kerry Scott, Yuan Tian, Fabiola Cecchi, Todd Hembrough, Deepu Alex, Ronglai Shen, Ryma Benayed, Bob T Li, Charles M Rudin, Mark G Kris, Maria E Arcila, Natasha Rekhtman, Paul Paik, Ahmet Zehir, Alexander E Drilon
MET Exon 14-altered Lung Cancers and MET Inhibitor Resistance. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (3) (2020)
Linde A Miles, Robert L Bowman, Tiffany R Merlinsky, Isabelle S Csete, Aik T Ooi, Robert Durruthy-Durruthy, Michael Bowman, Christopher Famulare, Minal A Patel, Pedro Mendez, Chrysanthi Ainali, Benjamin Demaree, Cyrille L Delley, Adam R Abate, Manimozhi Manivannan, Sombeet Sahu, Aaron D Goldberg, Kelly L Bolton, Ahmet Zehir, Raajit Rampal, Martin P Carroll, Sara E Meyer, Aaron D Viny, Ross L Levine
Single-cell mutation analysis of clonal evolution in myeloid malignancies. Nature 587 (7834) (2020)
Alicia J Latham, Jinru Shia, Zalak Patel, Diane L Reidy-Lagunes, Neil H Segal, Rona Yaeger, Karuna Ganesh, Louise Connell, Nancy E Kemeny, David P Kelsen, Jaclyn F Hechtman, Garrett M Nash, Philip B Paty, Ahmet Zehir, Kaitlin A Tkachuk, Rania Sheikh, Arnold J Markowitz, Diana Mandelker, Kenneth Offit, Michael F Berger, Andrea Cercek, Julio Garcia-Aguilar, Leonard B Saltz, Martin R Weiser, Zsofia K Stadler
Characterization and Clinical Outcomes of DNA Mismatch Repair-deficient Small Bowel Adenocarcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (5) (2020)
Kelly L Bolton, Ryan N Ptashkin, Teng Gao, Lior Braunstein, Sean M Devlin, Daniel Kelly, Minal Patel, Antonin Berthon, Aijazuddin Syed, Mariko Yabe, Catherine C Coombs, Nicole M Caltabellotta, Mike Walsh, Kenneth Offit, Zsofia Stadler, Diana Mandelker, Jessica Schulman, Akshar Patel, John Philip, Elsa Bernard, Gunes Gundem, Juan E Arango Ossa, Max Fine Levine, Juan S Medina Martinez, Noushin Farnoud, Dominik Glodzik, Sonya Li, Mark E Robson, Choonsik Lee, Paul David Peter Pharoah, Konrad H Stopsack, Barbara Spitzer, Simon Mantha, James A Fagin, Laura Boucai, Christopher J Gibson, Benjamin L Ebert, Andrew L Young, Todd Druley, Koichi Takahashi, Nancy Gillis, Markus Ball, Eric Padron, David M Hyman, Jose Baselga, Larry Norton, Stuart Gardos, Virginia M Klimek, Howard Scher, Dean Bajorin, Eder Paraiso, Ryma Benayed, Maria E Arcila, Marc Ladanyi, David B Solit, Michael F Berger, Martin Tallman, Montserrat Garcia-Closas, Nilanjan Chatterjee, Luis A Diaz, Ross L Levine, Lindsay M Morton, Ahmet Zehir, Elli Papaemmanuil
Cancer therapy shapes the fitness landscape of clonal hematopoiesis. Nature genetics 52 (11) (2020)
Philip Jonsson, Andrew L Lin, Robert J Young, Natalie M DiStefano, David M Hyman, Bob T Li, Michael F Berger, Ahmet Zehir, Marc Ladanyi, David B Solit, Angela G Arnold, Zsofia K Stadler, Diana Mandelker, Michael E Goldberg, Juliann Chmielecki, Maryam Pourmaleki, Shahiba Q Ogilvie, Shweta S Chavan, Andrew T McKeown, Malbora Manne, Allison Hyde, Kathryn Beal, T Jonathan Yang, Craig P Nolan, Elena Pentsova, Antonio Omuro, Igor T Gavrilovic, Thomas J Kaley, Eli L Diamond, Jacqueline B Stone, Christian Grommes, Adrienne A Boire, Mariza Daras, Anna F Piotrowski, Alexandra M Miller, Philip H Gutin, Timothy A Chan, Viviane S Tabar, Cameron W Brennan, Marc Rosenblum, Lisa M DeAngelis, Ingo K Mellinghoff, Barry S Taylor
Genomic Correlates of Disease Progression and Treatment Response in Prospectively Characterized Gliomas. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (18) (2019)
Ryma Benayed, Michael D Offin, Kerry Mullaney, Purvil Sukhadia, Kelly Rios, Patrice Desmeules, Ryan N Ptashkin, Helen Won, Jason Chang, Darragh Halpenny, Alison M Schram, Charles M Rudin, David M Hyman, Maria E Arcila, Michael F Berger, Ahmet Zehir, Mark G Kris, Alexander E Drilon, Marc Ladanyi
High Yield of RNA Sequencing for Targetable Kinase Fusions in Lung Adenocarcinomas with No Mitogenic Driver Alteration Detected by DNA Sequencing and Low Tumor Mutation Burden. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (15) (2019)
Yoshiyuki Suehara, Deepu Alex, Anita S Bowman, Sumit Middha, Ahmet Zehir, Debyani Chakravarty, Lu Wang, George Jour, Khedoudja Nafa, Takuo Hayashi, Achim A Jungbluth, Denise Frosina, Emily K Slotkin, Neerav Shukla, Paul A Meyers, John H Healey, Meera Hameed, Marc Ladanyi
Clinical Genomic Sequencing of Pediatric and Adult Osteosarcoma Reveals Distinct Molecular Subsets with Potentially Targetable Alterations. Clinical cancer research : an official journal of the American Association for Cancer Research 25 (21) (2019)
Rajarsi Mandal, Robert M Samstein, Ken-Wing Lee, Jonathan J Havel, Hao Wang, Chirag Krishna, Erich Y Sabio, Vladimir Makarov, Fengshen Kuo, Pedro Blecua, Apoorva T Ramaswamy, Jennifer N Durham, Bjarne Bartlett, Xiaoxiao Ma, Raghvendra Srivastava, Sumit Middha, Ahmet Zehir, Jaclyn F Hechtman, Luc G T Morris, Nils Weinhold, Nadeem Riaz, Dung T Le, Luis A Diaz, Timothy A Chan
Genetic diversity of tumors with mismatch repair deficiency influences anti-PD-1 immunotherapy response. Science (New York, N.Y.) 364 (6439) (2019)
Emiliano Cocco, Jamal Benhamida, Sumit Middha, Ahmet Zehir, Kerry Mullaney, Jinru Shia, Rona Yaeger, Zarina Yelskaya, Donna Wong, Liliana Villafania, Khedoudja Nafa, Maurizio Scaltriti, Alexander E Drilon, Leonard B Saltz, Alison M Schram, Zsofia K Stadler, David M Hyman, Ryma Benayed, Marc Ladanyi, Jaclyn F Hechtman
Colorectal Carcinomas Containing Hypermethylated MLH1 Promoter and Wild-Type BRAF/KRAS Are Enriched for Targetable Kinase Fusions. Cancer research 79 (6) (2019)
Robert M Samstein, Chung-Han Lee, Alexander N Shoushtari, Matthew D Hellmann, Ronglai Shen, Yelena Y Janjigian, David A Barron, Ahmet Zehir, Emmet J Jordan, Antonio Omuro, Thomas J Kaley, Sviatoslav M Kendall, Robert J Motzer, A Ari Hakimi, Martin H Voss, Paul Russo, Jonathan Rosenberg, Gopakumar V Iyer, Bernard H Bochner, Dean F Bajorin, Hikmat A Al-Ahmadie, Jamie E Chaft, Charles M Rudin, Gregory J Riely, Shrujal Baxi, Alan L Ho, Richard J Wong, David G Pfister, Jedd D Wolchok, Christopher A Barker, Philip H Gutin, Cameron W Brennan, Viviane Tabar, Ingo K Mellinghoff, Lisa M DeAngelis, Charlotte E Ariyan, Nancy Lee, William D Tap, Mrinal M Gounder, Sandra P D'Angelo, Leonard Saltz, Zsofia K Stadler, Howard I Scher, Jose Baselga, Pedram Razavi, Christopher A Klebanoff, Rona Yaeger, Neil H Segal, Geoffrey Y Ku, Ronald P DeMatteo, Marc Ladanyi, Naiyer A Rizvi, Michael F Berger, Nadeem Riaz, David B Solit, Timothy A Chan, Luc G T Morris
Tumor mutational load predicts survival after immunotherapy across multiple cancer types. Nature genetics 51 (2) (2019)
James P Solomon, Irina Linkov, Andrea Rosado, Kerry Mullaney, Ezra Y Rosen, Denise Frosina, Achim A Jungbluth, Ahmet Zehir, Ryma Benayed, Alexander E Drilon, David M Hyman, Marc Ladanyi, Anthony N Sireci, Jaclyn F Hechtman
NTRK fusion detection across multiple assays and 33,997 cases: diagnostic implications and pitfalls. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 33 (1) (2019)
Jaclyn F Hechtman, Satshil Rana, Sumit Middha, Zsofia K Stadler, Alicia Latham, Ryma Benayed, Robert Soslow, Marc Ladanyi, Rona Yaeger, Ahmet Zehir, Jinru Shia
Retained mismatch repair protein expression occurs in approximately 6% of microsatellite instability-high cancers and is associated with missense mutations in mismatch repair genes. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 33 (5) (2019)
Guo Gord Zhu, Khedoudja Nafa, Narasimhan Agaram, Ahmet Zehir, Ryma Benayed, Justyna Sadowska, Laetitia Borsu, Ciara Kelly, William D Tap, Nicola Fabbri, Edward Athanasian, Patrick J Boland, John H Healey, Michael F Berger, Marc Ladanyi, Meera Hameed
Genomic Profiling Identifies Association of IDH1/IDH2 Mutation with Longer Relapse-Free and Metastasis-Free Survival in High-Grade Chondrosarcoma. Clinical cancer research : an official journal of the American Association for Cancer Research 26 (2) (2019)
Dara S Ross, Ahmet Zehir, Edi Brogi, Fumiko Konno, Melissa Krystel-Whittemore, Marcia Edelweiss, Michael F Berger, Weiyi Toy, Sarat Chandarlapaty, Pedram Razavi, José Baselga, Hannah Y Wen
Immunohistochemical analysis of estrogen receptor in breast cancer with ESR1 mutations detected by hybrid capture-based next-generation sequencing. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 32 (1) (2018)
Craig M Bielski, Ahmet Zehir, Alexander V Penson, Mark T A Donoghue, Walid K Chatila, Joshua Armenia, Matthew T Chang, Alison M Schram, Philip Jonsson, Chaitanya Bandlamudi, Pedram Razavi, Gopakumar V Iyer, Mark E Robson, Zsofia K Stadler, Nikolaus Schultz, Jose Baselga, David B Solit, David M Hyman, Michael F Berger, Barry S Taylor
Genome doubling shapes the evolution and prognosis of advanced cancers. Nature genetics 50 (8) (2018)
James J Harding, Maeve A Lowery, Alan H Shih, Juan-Manuel Schvartzman, Shengqi Hou, Christopher Famulare, Minal Patel, Mikhail Roshal, Richard Kinh Gian Do, Ahmet Zehir, Daoqi You, S Duygu Selcuklu, Agnes Viale, Martin S Tallman, David M Hyman, Ed Reznik, Lydia W S Finley, Elli Papaemmanuil, Alessandra Tosolini, Mark G Frattini, Kyle J MacBeth, Guowen Liu, Bin Fan, Sung Choe, Bin Wu, Yelena Y Janjigian, Ingo K Mellinghoff, Luis A Diaz, Ross L Levine, Ghassan K Abou-Alfa, Eytan M Stein, Andrew M Intlekofer
Isoform Switching as a Mechanism of Acquired Resistance to Mutant Isocitrate Dehydrogenase Inhibition. Cancer discovery 8 (12) (2018)
Helena A Yu, Ken Suzawa, Emmet Jordan, Ahmet Zehir, Ai Ni, Ryan Kim, Mark G Kris, Matthew D Hellmann, Bob T Li, Romel Somwar, David B Solit, Michael F Berger, Maria Arcila, Gregory J Riely, Marc Ladanyi
Concurrent Alterations in EGFR-Mutant Lung Cancers Associated with Resistance to EGFR Kinase Inhibitors and Characterization of MTOR as a Mediator of Resistance. Clinical cancer research : an official journal of the American Association for Cancer Research 24 (13) (2018)
Tara E Soumerai, Mark T A Donoghue, Chaitanya Bandlamudi, Preethi Srinivasan, Matthew T Chang, Dmitriy Zamarin, Karen A Cadoo, Rachel N Grisham, Roisin E O'Cearbhaill, William P Tew, Jason A Konner, Martee L Hensley, Vicky Makker, Paul Sabbatini, David R Spriggs, Tiffany A Troso-Sandoval, Alexandra Snyder Charen, Claire F Friedman, Mila Gorsky, Sarah J Schweber, Sumit Middha, Rajmohan Murali, Sarah Chiang, Kay J Park, Robert A Soslow, Marc Ladanyi, Bob T Li, Jennifer Mueller, Britta Weigelt, Ahmet Zehir, Michael F Berger, Nadeem R Abu-Rustum, Carol Aghajanian, Deborah F DeLair, David B Solit, Barry S Taylor, David M Hyman
Clinical Utility of Prospective Molecular Characterization in Advanced Endometrial Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research 24 (23) (2018)
Caitlin M Stewart, Prachi D Kothari, Florent Mouliere, Richard Mair, Saira Somnay, Ryma Benayed, Ahmet Zehir, Jorge S Reis-Filho, Sarah-Jane Dawson, Maria E Arcila, Michael F Berger, Dana Wai Yi Tsui
The value of cell-free DNA for molecular pathology. The Journal of pathology 244 (5) (2018)
Ahmet Zehir, Ryma Benayed, Ronak H Shah, Aijazuddin Syed, Sumit Middha, Hyunjae Ryan Kim, Preethi Srinivasan, Jianjiong Gao, Debyani Chakravarty, Sean M Devlin, Matthew D Hellmann, David A Barron, Alison M Schram, Meera Hameed, Snjezana Dogan, Dara S Ross, Jaclyn F Hechtman, Deborah F DeLair, JinJuan Yao, Diana L Mandelker, Donavan T Cheng, Raghu Chandramohan, Abhinita S Mohanty, Ryan N Ptashkin, Gowtham Jayakumaran, Meera Prasad, Mustafa H Syed, Anoop Balakrishnan Rema, Zhen Y Liu, Khedoudja Nafa, Laetitia Borsu, Justyna Sadowska, Jacklyn Casanova, Ruben Bacares, Iwona J Kiecka, Anna Razumova, Julie B Son, Lisa Stewart, Tessara Baldi, Kerry A Mullaney, Hikmat Al-Ahmadie, Efsevia Vakiani, Adam A Abeshouse, Alexander V Penson, Philip Jonsson, Niedzica Camacho, Matthew T Chang, Helen H Won, Benjamin E Gross, Ritika Kundra, Zachary J Heins, Hsiao-Wei Chen, Sarah Phillips, Hongxin Zhang, Jiaojiao Wang, Angelica Ochoa, Jonathan Wills, Michael Eubank, Stacy B Thomas, Stuart M Gardos, Dalicia N Reales, Jesse Galle, Robert Durany, Roy Cambria, Wassim Abida, Andrea Cercek, Darren R Feldman, Mrinal M Gounder, A Ari Hakimi, James J Harding, Gopakumar V Iyer, Yelena Y Janjigian, Emmet J Jordan, Ciara M Kelly, Maeve A Lowery, Luc G T Morris, Antonio M Omuro, Nitya Raj, Pedram Razavi, Alexander N Shoushtari, Neerav Shukla, Tara E Soumerai, Anna M Varghese, Rona Yaeger, Jonathan Coleman, Bernard Bochner, Gregory J Riely, Leonard B Saltz, Howard I Scher, Paul J Sabbatini, Mark E Robson, David S Klimstra, Barry S Taylor, Jose Baselga, Nikolaus Schultz, David M Hyman, Maria E Arcila, David B Solit, Marc Ladanyi, Michael F Berger
Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients. Nature medicine 23 (6) (2017)
Diego Chowell, Luc G T Morris, Claud M Grigg, Jeffrey K Weber, Robert M Samstein, Vladimir Makarov, Fengshen Kuo, Sviatoslav M Kendall, David Requena, Nadeem Riaz, Benjamin Greenbaum, James Carroll, Edward Garon, David M Hyman, Ahmet Zehir, David B Solit, Michael F Berger, Ruhong Zhou, Naiyer A Rizvi, Timothy A Chan
Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy. Science (New York, N.Y.) 359 (6375) (2017)

Ahmet Zehir.css-eqlu8i{font-size:small;padding-left:4px;} (A Zehir)

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Ahmet Zehir (A Zehir)